2020-07-22 11:42:59 +00:00
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# cython: infer_types=True, profile=True, binding=True
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from typing import Optional
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2020-04-02 12:46:32 +00:00
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import srsly
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2020-07-22 11:42:59 +00:00
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from thinc.api import SequenceCategoricalCrossentropy, Model, Config
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2020-01-29 16:06:46 +00:00
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2020-03-02 10:48:10 +00:00
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from ..tokens.doc cimport Doc
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from ..vocab cimport Vocab
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from ..morphology cimport Morphology
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2020-04-02 12:46:32 +00:00
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from ..parts_of_speech import IDS as POS_IDS
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from ..symbols import POS
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2020-03-02 10:48:10 +00:00
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2020-07-22 11:42:59 +00:00
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from ..language import Language
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from ..errors import Errors
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from .pipe import deserialize_config
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from .tagger import Tagger
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2019-03-07 09:46:27 +00:00
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from .. import util
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Refactor the Scorer to improve flexibility (#5731)
* Refactor the Scorer to improve flexibility
Refactor the `Scorer` to improve flexibility for arbitrary pipeline
components.
* Individual pipeline components provide their own `evaluate` methods
that score a list of `Example`s and return a dictionary of scores
* `Scorer` is initialized either:
* with a provided pipeline containing components to be scored
* with a default pipeline containing the built-in statistical
components (senter, tagger, morphologizer, parser, ner)
* `Scorer.score` evaluates a list of `Example`s and returns a dictionary
of scores referring to the scores provided by the components in the
pipeline
Significant differences:
* `tags_acc` is renamed to `tag_acc` to be consistent with `token_acc`
and the new `morph_acc`, `pos_acc`, and `lemma_acc`
* Scoring is no longer cumulative: `Scorer.score` scores a list of
examples rather than a single example and does not retain any state
about previously scored examples
* PRF values in the returned scores are no longer multiplied by 100
* Add kwargs to Morphologizer.evaluate
* Create generalized scoring methods in Scorer
* Generalized static scoring methods are added to `Scorer`
* Methods require an attribute (either on Token or Doc) that is
used to key the returned scores
Naming differences:
* `uas`, `las`, and `las_per_type` in the scores dict are renamed to
`dep_uas`, `dep_las`, and `dep_las_per_type`
Scoring differences:
* `Doc.sents` is now scored as spans rather than on sentence-initial
token positions so that `Doc.sents` and `Doc.ents` can be scored with
the same method (this lowers scores since a single incorrect sentence
start results in two incorrect spans)
* Simplify / extend hasattr check for eval method
* Add hasattr check to tokenizer scoring
* Simplify to hasattr check for component scoring
* Reset Example alignment if docs are set
Reset the Example alignment if either doc is set in case the
tokenization has changed.
* Add PRF tokenization scoring for tokens as spans
Add PRF scores for tokens as character spans. The scores are:
* token_acc: # correct tokens / # gold tokens
* token_p/r/f: PRF for (token.idx, token.idx + len(token))
* Add docstring to Scorer.score_tokenization
* Rename component.evaluate() to component.score()
* Update Scorer API docs
* Update scoring for positive_label in textcat
* Fix TextCategorizer.score kwargs
* Update Language.evaluate docs
* Update score names in default config
2020-07-25 10:53:02 +00:00
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from ..scorer import Scorer
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2018-09-24 21:14:06 +00:00
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2020-07-22 11:42:59 +00:00
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default_model_config = """
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[model]
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@architectures = "spacy.Tagger.v1"
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[model.tok2vec]
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2020-07-28 20:59:42 +00:00
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@architectures = "spacy.Tok2Vec.v1"
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[model.tok2vec.embed]
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@architectures = "spacy.CharacterEmbed.v1"
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width = 128
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rows = 7000
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nM = 64
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nC = 8
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[model.tok2vec.encode]
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@architectures = "spacy.MaxoutWindowEncoder.v1"
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2020-07-22 11:42:59 +00:00
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width = 128
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depth = 4
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window_size = 1
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maxout_pieces = 3
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"""
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2020-07-28 20:59:42 +00:00
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2020-07-22 11:42:59 +00:00
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DEFAULT_MORPH_MODEL = Config().from_str(default_model_config)["model"]
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@Language.factory(
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"morphologizer",
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assigns=["token.morph", "token.pos"],
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2020-07-27 10:27:40 +00:00
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default_config={"model": DEFAULT_MORPH_MODEL},
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scores=["pos_acc", "morph_acc", "morph_per_feat"],
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default_score_weights={"pos_acc": 0.5, "morph_acc": 0.5},
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2020-07-22 11:42:59 +00:00
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)
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def make_morphologizer(
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nlp: Language,
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model: Model,
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name: str,
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):
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return Morphologizer(nlp.vocab, model, name)
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2019-10-27 12:35:49 +00:00
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2020-07-22 11:42:59 +00:00
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class Morphologizer(Tagger):
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2020-07-19 09:10:51 +00:00
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POS_FEAT = "POS"
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2020-07-22 11:42:59 +00:00
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def __init__(
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self,
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vocab: Vocab,
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model: Model,
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name: str = "morphologizer",
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*,
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labels_morph: Optional[dict] = None,
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labels_pos: Optional[dict] = None,
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):
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2020-07-27 16:11:45 +00:00
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"""Initialize a morphologizer.
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vocab (Vocab): The shared vocabulary.
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model (thinc.api.Model): The Thinc Model powering the pipeline component.
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name (str): The component instance name, used to add entries to the
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losses during training.
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labels_morph (dict): TODO:
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labels_pos (dict): TODO:
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DOCS: https://spacy.io/api/morphologizer#init
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"""
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2018-09-24 21:14:06 +00:00
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self.vocab = vocab
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self.model = model
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2020-07-22 11:42:59 +00:00
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self.name = name
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2020-04-02 12:46:32 +00:00
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self._rehearsal_model = None
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2020-07-19 09:10:51 +00:00
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# to be able to set annotations without string operations on labels,
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# store mappings from morph+POS labels to token-level annotations:
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# 1) labels_morph stores a mapping from morph+POS->morph
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# 2) labels_pos stores a mapping from morph+POS->POS
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2020-07-22 11:42:59 +00:00
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cfg = {"labels_morph": labels_morph or {}, "labels_pos": labels_pos or {}}
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self.cfg = dict(sorted(cfg.items()))
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2020-07-19 09:10:51 +00:00
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# add mappings for empty morph
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self.cfg["labels_morph"][Morphology.EMPTY_MORPH] = Morphology.EMPTY_MORPH
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self.cfg["labels_pos"][Morphology.EMPTY_MORPH] = POS_IDS[""]
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2018-09-24 21:14:06 +00:00
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@property
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def labels(self):
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2020-07-27 16:11:45 +00:00
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"""RETURNS (Tuple[str]): The labels currently added to the component."""
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2020-07-19 09:10:51 +00:00
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return tuple(self.cfg["labels_morph"].keys())
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2020-04-02 12:46:32 +00:00
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def add_label(self, label):
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2020-07-27 16:11:45 +00:00
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"""Add a new label to the pipe.
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label (str): The label to add.
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2020-07-28 11:37:31 +00:00
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RETURNS (int): 0 if label is already present, otherwise 1.
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2020-07-27 16:11:45 +00:00
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DOCS: https://spacy.io/api/morphologizer#add_label
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"""
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2020-04-02 12:46:32 +00:00
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if not isinstance(label, str):
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raise ValueError(Errors.E187)
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if label in self.labels:
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return 0
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2020-07-19 09:10:51 +00:00
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# normalize label
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norm_label = self.vocab.morphology.normalize_features(label)
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# extract separate POS and morph tags
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label_dict = Morphology.feats_to_dict(label)
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pos = label_dict.get(self.POS_FEAT, "")
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if self.POS_FEAT in label_dict:
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label_dict.pop(self.POS_FEAT)
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# normalize morph string and add to morphology table
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norm_morph = self.vocab.strings[self.vocab.morphology.add(label_dict)]
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# add label mappings
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if norm_label not in self.cfg["labels_morph"]:
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self.cfg["labels_morph"][norm_label] = norm_morph
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self.cfg["labels_pos"][norm_label] = POS_IDS[pos]
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2020-04-02 12:46:32 +00:00
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return 1
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2018-09-24 21:14:06 +00:00
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2020-07-27 16:11:45 +00:00
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def begin_training(self, get_examples=lambda: [], *, pipeline=None, sgd=None):
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"""Initialize the pipe for training, using data examples if available.
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get_examples (Callable[[], Iterable[Example]]): Optional function that
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returns gold-standard Example objects.
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pipeline (List[Tuple[str, Callable]]): Optional list of pipeline
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components that this component is part of. Corresponds to
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nlp.pipeline.
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sgd (thinc.api.Optimizer): Optional optimizer. Will be created with
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create_optimizer if it doesn't exist.
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RETURNS (thinc.api.Optimizer): The optimizer.
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DOCS: https://spacy.io/api/morphologizer#begin_training
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"""
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2020-04-02 12:46:32 +00:00
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for example in get_examples():
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2020-06-26 17:34:12 +00:00
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for i, token in enumerate(example.reference):
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pos = token.pos_
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2020-07-19 09:10:51 +00:00
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morph = token.morph_
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# create and add the combined morph+POS label
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morph_dict = Morphology.feats_to_dict(morph)
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2020-04-02 12:46:32 +00:00
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if pos:
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2020-07-19 09:10:51 +00:00
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morph_dict[self.POS_FEAT] = pos
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norm_label = self.vocab.strings[self.vocab.morphology.add(morph_dict)]
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# add label->morph and label->POS mappings
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if norm_label not in self.cfg["labels_morph"]:
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self.cfg["labels_morph"][norm_label] = morph
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self.cfg["labels_pos"][norm_label] = POS_IDS[pos]
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2020-02-27 17:42:27 +00:00
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self.set_output(len(self.labels))
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self.model.initialize()
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if sgd is None:
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sgd = self.create_optimizer()
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return sgd
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2020-04-02 12:46:32 +00:00
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def set_annotations(self, docs, batch_tag_ids):
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2020-07-27 16:11:45 +00:00
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"""Modify a batch of documents, using pre-computed scores.
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docs (Iterable[Doc]): The documents to modify.
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batch_tag_ids: The IDs to set, produced by Morphologizer.predict.
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2020-07-29 12:09:37 +00:00
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DOCS: https://spacy.io/api/morphologizer#set_annotations
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2020-07-27 16:11:45 +00:00
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"""
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2018-09-24 21:14:06 +00:00
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if isinstance(docs, Doc):
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docs = [docs]
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cdef Doc doc
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cdef Vocab vocab = self.vocab
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for i, doc in enumerate(docs):
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2020-04-02 12:46:32 +00:00
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doc_tag_ids = batch_tag_ids[i]
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if hasattr(doc_tag_ids, "get"):
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doc_tag_ids = doc_tag_ids.get()
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for j, tag_id in enumerate(doc_tag_ids):
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morph = self.labels[tag_id]
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2020-07-19 09:10:51 +00:00
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doc.c[j].morph = self.vocab.morphology.add(self.cfg["labels_morph"][morph])
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doc.c[j].pos = self.cfg["labels_pos"][morph]
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2020-04-02 12:46:32 +00:00
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doc.is_morphed = True
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2018-09-24 21:14:06 +00:00
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2019-11-11 16:35:27 +00:00
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def get_loss(self, examples, scores):
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2020-07-27 16:11:45 +00:00
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"""Find the loss and gradient of loss for the batch of documents and
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their predicted scores.
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examples (Iterable[Examples]): The batch of examples.
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scores: Scores representing the model's predictions.
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RETUTNRS (Tuple[float, float]): The loss and the gradient.
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DOCS: https://spacy.io/api/morphologizer#get_loss
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"""
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2020-07-08 11:59:28 +00:00
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loss_func = SequenceCategoricalCrossentropy(names=self.labels, normalize=False)
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truths = []
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2020-06-26 17:34:12 +00:00
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for eg in examples:
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2020-07-08 11:59:28 +00:00
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eg_truths = []
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2020-06-26 17:34:12 +00:00
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pos_tags = eg.get_aligned("POS", as_string=True)
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morphs = eg.get_aligned("MORPH", as_string=True)
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for i in range(len(morphs)):
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pos = pos_tags[i]
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morph = morphs[i]
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2020-07-19 09:10:51 +00:00
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# POS may align (same value for multiple tokens) when morph
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# doesn't, so if either is None, treat both as None here so that
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# truths doesn't end up with an unknown morph+POS combination
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if pos is None or morph is None:
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pos = None
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morph = None
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label_dict = Morphology.feats_to_dict(morph)
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2020-04-02 12:46:32 +00:00
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if pos:
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2020-07-19 09:10:51 +00:00
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label_dict[self.POS_FEAT] = pos
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label = self.vocab.strings[self.vocab.morphology.add(label_dict)]
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eg_truths.append(label)
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2020-07-08 11:59:28 +00:00
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truths.append(eg_truths)
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d_scores, loss = loss_func(scores, truths)
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if self.model.ops.xp.isnan(loss):
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raise ValueError("nan value when computing loss")
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2018-09-24 21:14:06 +00:00
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return float(loss), d_scores
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Refactor the Scorer to improve flexibility (#5731)
* Refactor the Scorer to improve flexibility
Refactor the `Scorer` to improve flexibility for arbitrary pipeline
components.
* Individual pipeline components provide their own `evaluate` methods
that score a list of `Example`s and return a dictionary of scores
* `Scorer` is initialized either:
* with a provided pipeline containing components to be scored
* with a default pipeline containing the built-in statistical
components (senter, tagger, morphologizer, parser, ner)
* `Scorer.score` evaluates a list of `Example`s and returns a dictionary
of scores referring to the scores provided by the components in the
pipeline
Significant differences:
* `tags_acc` is renamed to `tag_acc` to be consistent with `token_acc`
and the new `morph_acc`, `pos_acc`, and `lemma_acc`
* Scoring is no longer cumulative: `Scorer.score` scores a list of
examples rather than a single example and does not retain any state
about previously scored examples
* PRF values in the returned scores are no longer multiplied by 100
* Add kwargs to Morphologizer.evaluate
* Create generalized scoring methods in Scorer
* Generalized static scoring methods are added to `Scorer`
* Methods require an attribute (either on Token or Doc) that is
used to key the returned scores
Naming differences:
* `uas`, `las`, and `las_per_type` in the scores dict are renamed to
`dep_uas`, `dep_las`, and `dep_las_per_type`
Scoring differences:
* `Doc.sents` is now scored as spans rather than on sentence-initial
token positions so that `Doc.sents` and `Doc.ents` can be scored with
the same method (this lowers scores since a single incorrect sentence
start results in two incorrect spans)
* Simplify / extend hasattr check for eval method
* Add hasattr check to tokenizer scoring
* Simplify to hasattr check for component scoring
* Reset Example alignment if docs are set
Reset the Example alignment if either doc is set in case the
tokenization has changed.
* Add PRF tokenization scoring for tokens as spans
Add PRF scores for tokens as character spans. The scores are:
* token_acc: # correct tokens / # gold tokens
* token_p/r/f: PRF for (token.idx, token.idx + len(token))
* Add docstring to Scorer.score_tokenization
* Rename component.evaluate() to component.score()
* Update Scorer API docs
* Update scoring for positive_label in textcat
* Fix TextCategorizer.score kwargs
* Update Language.evaluate docs
* Update score names in default config
2020-07-25 10:53:02 +00:00
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def score(self, examples, **kwargs):
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2020-07-27 16:11:45 +00:00
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"""Score a batch of examples.
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examples (Iterable[Example]): The examples to score.
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RETURNS (Dict[str, Any]): The scores, produced by
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Scorer.score_token_attr for the attributes "pos" and "morph" and
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Scorer.score_token_attr_per_feat for the attribute "morph".
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DOCS: https://spacy.io/api/morphologizer#score
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"""
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Refactor the Scorer to improve flexibility (#5731)
* Refactor the Scorer to improve flexibility
Refactor the `Scorer` to improve flexibility for arbitrary pipeline
components.
* Individual pipeline components provide their own `evaluate` methods
that score a list of `Example`s and return a dictionary of scores
* `Scorer` is initialized either:
* with a provided pipeline containing components to be scored
* with a default pipeline containing the built-in statistical
components (senter, tagger, morphologizer, parser, ner)
* `Scorer.score` evaluates a list of `Example`s and returns a dictionary
of scores referring to the scores provided by the components in the
pipeline
Significant differences:
* `tags_acc` is renamed to `tag_acc` to be consistent with `token_acc`
and the new `morph_acc`, `pos_acc`, and `lemma_acc`
* Scoring is no longer cumulative: `Scorer.score` scores a list of
examples rather than a single example and does not retain any state
about previously scored examples
* PRF values in the returned scores are no longer multiplied by 100
* Add kwargs to Morphologizer.evaluate
* Create generalized scoring methods in Scorer
* Generalized static scoring methods are added to `Scorer`
* Methods require an attribute (either on Token or Doc) that is
used to key the returned scores
Naming differences:
* `uas`, `las`, and `las_per_type` in the scores dict are renamed to
`dep_uas`, `dep_las`, and `dep_las_per_type`
Scoring differences:
* `Doc.sents` is now scored as spans rather than on sentence-initial
token positions so that `Doc.sents` and `Doc.ents` can be scored with
the same method (this lowers scores since a single incorrect sentence
start results in two incorrect spans)
* Simplify / extend hasattr check for eval method
* Add hasattr check to tokenizer scoring
* Simplify to hasattr check for component scoring
* Reset Example alignment if docs are set
Reset the Example alignment if either doc is set in case the
tokenization has changed.
* Add PRF tokenization scoring for tokens as spans
Add PRF scores for tokens as character spans. The scores are:
* token_acc: # correct tokens / # gold tokens
* token_p/r/f: PRF for (token.idx, token.idx + len(token))
* Add docstring to Scorer.score_tokenization
* Rename component.evaluate() to component.score()
* Update Scorer API docs
* Update scoring for positive_label in textcat
* Fix TextCategorizer.score kwargs
* Update Language.evaluate docs
* Update score names in default config
2020-07-25 10:53:02 +00:00
|
|
|
results = {}
|
|
|
|
results.update(Scorer.score_token_attr(examples, "pos", **kwargs))
|
|
|
|
results.update(Scorer.score_token_attr(examples, "morph", **kwargs))
|
|
|
|
results.update(Scorer.score_token_attr_per_feat(examples,
|
|
|
|
"morph", **kwargs))
|
|
|
|
return results
|
|
|
|
|
2020-07-29 13:14:07 +00:00
|
|
|
def to_bytes(self, *, exclude=tuple()):
|
2020-07-27 16:11:45 +00:00
|
|
|
"""Serialize the pipe to a bytestring.
|
|
|
|
|
|
|
|
exclude (Iterable[str]): String names of serialization fields to exclude.
|
|
|
|
RETURNS (bytes): The serialized object.
|
|
|
|
|
|
|
|
DOCS: https://spacy.io/api/morphologizer#to_bytes
|
|
|
|
"""
|
2020-04-02 12:46:32 +00:00
|
|
|
serialize = {}
|
|
|
|
serialize["model"] = self.model.to_bytes
|
|
|
|
serialize["vocab"] = self.vocab.to_bytes
|
|
|
|
serialize["cfg"] = lambda: srsly.json_dumps(self.cfg)
|
|
|
|
return util.to_bytes(serialize, exclude)
|
|
|
|
|
2020-07-29 13:14:07 +00:00
|
|
|
def from_bytes(self, bytes_data, *, exclude=tuple()):
|
2020-07-27 16:11:45 +00:00
|
|
|
"""Load the pipe from a bytestring.
|
|
|
|
|
|
|
|
bytes_data (bytes): The serialized pipe.
|
|
|
|
exclude (Iterable[str]): String names of serialization fields to exclude.
|
|
|
|
RETURNS (Morphologizer): The loaded Morphologizer.
|
|
|
|
|
|
|
|
DOCS: https://spacy.io/api/morphologizer#from_bytes
|
|
|
|
"""
|
2020-04-02 12:46:32 +00:00
|
|
|
def load_model(b):
|
|
|
|
try:
|
|
|
|
self.model.from_bytes(b)
|
|
|
|
except AttributeError:
|
2020-08-05 21:53:21 +00:00
|
|
|
raise ValueError(Errors.E149) from None
|
2020-04-02 12:46:32 +00:00
|
|
|
|
|
|
|
deserialize = {
|
|
|
|
"vocab": lambda b: self.vocab.from_bytes(b),
|
|
|
|
"cfg": lambda b: self.cfg.update(srsly.json_loads(b)),
|
|
|
|
"model": lambda b: load_model(b),
|
|
|
|
}
|
|
|
|
util.from_bytes(bytes_data, deserialize, exclude)
|
|
|
|
return self
|
|
|
|
|
2020-07-29 13:14:07 +00:00
|
|
|
def to_disk(self, path, *, exclude=tuple()):
|
2020-07-27 16:11:45 +00:00
|
|
|
"""Serialize the pipe to disk.
|
|
|
|
|
|
|
|
path (str / Path): Path to a directory.
|
|
|
|
exclude (Iterable[str]): String names of serialization fields to exclude.
|
|
|
|
|
|
|
|
DOCS: https://spacy.io/api/morphologizer#to_disk
|
|
|
|
"""
|
2020-04-02 12:46:32 +00:00
|
|
|
serialize = {
|
|
|
|
"vocab": lambda p: self.vocab.to_disk(p),
|
|
|
|
"model": lambda p: p.open("wb").write(self.model.to_bytes()),
|
|
|
|
"cfg": lambda p: srsly.write_json(p, self.cfg),
|
|
|
|
}
|
|
|
|
util.to_disk(path, serialize, exclude)
|
|
|
|
|
2020-07-29 13:14:07 +00:00
|
|
|
def from_disk(self, path, *, exclude=tuple()):
|
2020-07-27 16:11:45 +00:00
|
|
|
"""Load the pipe from disk. Modifies the object in place and returns it.
|
|
|
|
|
|
|
|
path (str / Path): Path to a directory.
|
|
|
|
exclude (Iterable[str]): String names of serialization fields to exclude.
|
|
|
|
RETURNS (Morphologizer): The modified Morphologizer object.
|
|
|
|
|
|
|
|
DOCS: https://spacy.io/api/morphologizer#from_disk
|
|
|
|
"""
|
2020-04-02 12:46:32 +00:00
|
|
|
def load_model(p):
|
|
|
|
with p.open("rb") as file_:
|
|
|
|
try:
|
|
|
|
self.model.from_bytes(file_.read())
|
|
|
|
except AttributeError:
|
2020-08-05 21:53:21 +00:00
|
|
|
raise ValueError(Errors.E149) from None
|
2020-04-02 12:46:32 +00:00
|
|
|
|
|
|
|
deserialize = {
|
|
|
|
"vocab": lambda p: self.vocab.from_disk(p),
|
2020-07-22 11:42:59 +00:00
|
|
|
"cfg": lambda p: self.cfg.update(deserialize_config(p)),
|
2020-04-02 12:46:32 +00:00
|
|
|
"model": load_model,
|
|
|
|
}
|
|
|
|
util.from_disk(path, deserialize, exclude)
|
|
|
|
return self
|