Tal Einat
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cec57e693f
|
added common.count_different_items_with_max(seq1, seq2, max_different)
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2014-04-15 14:29:42 +03:00 |
|
Tal Einat
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c2330cfb54
|
added substitutions_only_has_near_matches_byteslike to benchmarks
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2014-04-12 19:48:04 +03:00 |
|
Tal Einat
|
0d41826ff9
|
optimized ngrams versions of levenshtein and subs-only searches
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2014-04-12 19:07:50 +03:00 |
|
Tal Einat
|
4d01edf822
|
fixed major bug in *_near_matches_generic_ngrams()
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2014-04-12 19:07:39 +03:00 |
|
Tal Einat
|
2a4f028f8d
|
added some tests for has_near_matches_*
Conflicts:
tests/test_generic_search.py
tests/test_substitutions_only.py
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2014-04-12 19:07:22 +03:00 |
|
Tal Einat
|
a8965879f2
|
added has_near_match_substitutions_ngrams
Conflicts:
benchmarks/__init__.py
|
2014-04-12 18:58:57 +03:00 |
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Tal Einat
|
86bb0137d7
|
optimized find_near_matches_generic_ngrams and added has_near_match_generic_ngrams
Conflicts:
benchmarks/__init__.py
benchmarks/__main__.py
|
2014-04-12 18:57:21 +03:00 |
|
Tal Einat
|
404b01159f
|
yet another benchmark for Kevin Rue's use case
|
2014-04-12 18:33:07 +03:00 |
|
Tal Einat
|
c58dff8f29
|
upgraded benchmarking code
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2014-04-12 18:32:33 +03:00 |
|
Tal Einat
|
879250c688
|
adding cython generated .c file
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2014-04-12 18:24:45 +03:00 |
|
Tal Einat
|
183b045645
|
fixed typo in module name
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2014-04-12 18:20:10 +03:00 |
|
Tal Einat
|
196c7766ea
|
replaced assertEquals to assertEqual to avoid deprecation warnings
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2014-04-12 18:09:00 +03:00 |
|
Tal Einat
|
a24d3f7739
|
nailed down automated testing and deployment, and fixed test_generic_search_cython
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2014-04-12 13:10:52 +03:00 |
|
Tal Einat
|
dccf4a47c6
|
added C implementation of has_near_matches_substitutions_only
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2014-04-12 13:10:34 +03:00 |
|
Tal Einat
|
54e166392e
|
added missing bytes type in _generic_search.ALLOWED_TYPES
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2014-04-12 12:54:47 +03:00 |
|
Tal Einat
|
31036827b6
|
added cython to requirements.txt
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2014-03-28 12:58:45 +03:00 |
|
Tal Einat
|
8b65f29b3f
|
greatly optimized Cython search function + fixed and added benchmarks
|
2014-03-28 12:51:32 +03:00 |
|
Tal Einat
|
2863b57236
|
first working Cython version of generic search
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2014-03-28 10:49:21 +03:00 |
|
Tal Einat
|
8ba0cc8dc3
|
got tox to run 2to3 on tests before running them with Python 3.x
|
2014-03-28 10:48:17 +03:00 |
|
Tal Einat
|
c12e6c3f2f
|
version 0.2.2
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2014-03-27 15:36:43 +02:00 |
|
Tal Einat
|
aea33df10e
|
added support for searching Biopython Seq objects
also added some tests for search_exact
|
2014-03-27 15:31:20 +02:00 |
|
Tal Einat
|
ef4168edcc
|
fixed test for Levenshtein search
|
2014-03-27 15:30:06 +02:00 |
|
Tal Einat
|
77e2de7cd0
|
fixed cross-version support of test using str.format
|
2014-03-27 15:29:26 +02:00 |
|
Tal Einat
|
777ce2f39c
|
added tests for find_near_matches and achieved 100% coverage
|
2014-03-20 18:50:33 +02:00 |
|
Tal Einat
|
08655a4c3f
|
added tests for levenshtein._expand() and changed test code to assertEqual(actual, expected) convention
|
2014-03-20 14:50:53 +02:00 |
|
Tal Einat
|
3b84e6e5fb
|
bugfix: generic search would raise an exception on certain input values
|
2014-03-19 23:50:33 +02:00 |
|
Tal Einat
|
39000bda80
|
bugfix: generic search wasn't finding matches ending with a sub
|
2014-03-19 23:46:34 +02:00 |
|
Tal Einat
|
7148d3b0d5
|
bugfix: always return a list from find_near_matches()
|
2014-03-19 23:45:17 +02:00 |
|
Tal Einat
|
26f927dbec
|
added fuzzy search allowing insertions and substitutions but no deletions
|
2014-03-17 17:07:59 +02:00 |
|
Tal Einat
|
10815b726b
|
fixed the test suite location in setup.py
|
2014-03-15 21:04:03 +02:00 |
|
Tal Einat
|
c6930e2712
|
added finding near matches with only substitutions
also added a super-generic find_near_matches() utility function
|
2014-03-15 19:36:13 +02:00 |
|
Tal Einat
|
6b91b654f1
|
fixed two edge-case bugs in custom search
also removed some commented out code
|
2014-03-14 17:13:42 +02:00 |
|
Tal Einat
|
af89a6681b
|
avoid using TestCase.assertItemsEqual()
The reason is that it is not avialable in the stdlib's unittest.
|
2014-03-14 13:06:12 +02:00 |
|
Tal Einat
|
77fe129c50
|
bumped version to 0.2.1 and updated HISTORY
|
2014-03-14 12:49:47 +02:00 |
|
Tal Einat
|
fa5c9c591f
|
minor code cleanup
|
2014-03-14 12:41:38 +02:00 |
|
Tal Einat
|
b1062bb8e9
|
simplify and add assertion in GroupOfMatches
|
2014-03-14 12:41:05 +02:00 |
|
Tal Einat
|
5d6ee30f46
|
removed commented-out debug prints
|
2014-03-14 12:40:08 +02:00 |
|
Tal Einat
|
56353946a5
|
fixed duplicate match grouping in find_near_matches()
|
2014-03-14 12:39:32 +02:00 |
|
Tal Einat
|
a098e33697
|
bugfix: fixed bug in common.group_matches()
|
2014-03-14 12:38:47 +02:00 |
|
Tal Einat
|
892533846c
|
bumped version to 0.2.0
|
2014-03-12 16:00:46 +02:00 |
|
Tal Einat
|
3bea01e281
|
additional documentation improvements (mostly examples)
|
2014-03-12 15:59:37 +02:00 |
|
Tal Einat
|
e5be9e241f
|
revert minor change to tox.ini to get Travis-CI working again
|
2014-03-12 15:56:56 +02:00 |
|
Tal Einat
|
1c4bed7c0a
|
added utility function with tests + some documentation
|
2014-03-12 15:46:48 +02:00 |
|
Tal Einat
|
b79a856b63
|
split into several files and renamed some functions
|
2014-03-12 12:00:21 +02:00 |
|
Tal Einat
|
7e92bf11be
|
fixed wrong date used in HISTORY
|
2013-11-12 16:22:27 +02:00 |
|
Tal Einat
|
a78274da0b
|
py31 not supported by Travis, so removed it from .travis.yml
|
2013-11-12 16:12:54 +02:00 |
|
Tal Einat
|
3018e8f08e
|
added .travis.yml to run tox tests
|
2013-11-12 16:05:48 +02:00 |
|
Tal Einat
|
3a2e9f224d
|
bumped version and updated docs
|
2013-11-12 10:58:41 +02:00 |
|
Tal Einat
|
64dfbe8214
|
fixed module import
|
2013-11-12 10:56:01 +02:00 |
|
Tal Einat
|
758a699a1a
|
minor bug fix in _expand() to avoid comparing int to None
|
2013-11-12 10:37:00 +02:00 |