mirror of https://github.com/explosion/spaCy.git
667 lines
26 KiB
Markdown
667 lines
26 KiB
Markdown
---
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title: Saving and Loading
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menu:
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- ['Basics', 'basics']
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- ['Serialization Methods', 'serialization-methods']
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- ['Entry Points', 'entry-points']
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- ['Models', 'models']
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---
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## Basics {#basics hidden="true"}
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import Serialization101 from 'usage/101/\_serialization.md'
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<Serialization101 />
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### Serializing the pipeline {#pipeline}
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When serializing the pipeline, keep in mind that this will only save out the
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**binary data for the individual components** to allow spaCy to restore them –
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not the entire objects. This is a good thing, because it makes serialization
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safe. But it also means that you have to take care of storing the language name
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and pipeline component names as well, and restoring them separately before you
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can load in the data.
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> #### Saving the meta and config
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>
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> The [`nlp.meta`](/api/language#meta) attribute is a JSON-serializable
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> dictionary and contains all model meta information like the author and license
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> information. The [`nlp.config`](/api/language#config) attribute is a
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> dictionary containing the training configuration, pipeline component factories
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> and other settings. It is saved out with a model as the `config.cfg`.
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```python
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### Serialize
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bytes_data = nlp.to_bytes()
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lang = nlp.config["nlp"]["lang"] # "en"
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pipeline = nlp.config["nlp"]["pipeline"] # ["tagger", "parser", "ner"]
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```
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```python
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### Deserialize
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nlp = spacy.blank(lang)
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for pipe_name in pipeline:
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nlp.add_pipe(pipe_name)
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nlp.from_bytes(bytes_data)
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```
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This is also how spaCy does it under the hood when loading a model: it loads the
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model's `config.cfg` containing the language and pipeline information,
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initializes the language class, creates and adds the pipeline components based
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on the defined
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[factories](/usage/processing-pipeline#custom-components-factories) and _then_
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loads in the binary data. You can read more about this process
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[here](/usage/processing-pipelines#pipelines).
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### Serializing Doc objects efficiently {#docs new="2.2"}
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If you're working with lots of data, you'll probably need to pass analyses
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between machines, either to use something like [Dask](https://dask.org) or
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[Spark](https://spark.apache.org), or even just to save out work to disk. Often
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it's sufficient to use the [`Doc.to_array`](/api/doc#to_array) functionality for
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this, and just serialize the numpy arrays – but other times you want a more
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general way to save and restore `Doc` objects.
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The [`DocBin`](/api/docbin) class makes it easy to serialize and deserialize a
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collection of `Doc` objects together, and is much more efficient than calling
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[`Doc.to_bytes`](/api/doc#to_bytes) on each individual `Doc` object. You can
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also control what data gets saved, and you can merge pallets together for easy
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map/reduce-style processing.
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```python
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### {highlight="4,8,9,13,14"}
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import spacy
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from spacy.tokens import DocBin
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doc_bin = DocBin(attrs=["LEMMA", "ENT_IOB", "ENT_TYPE"], store_user_data=True)
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texts = ["Some text", "Lots of texts...", "..."]
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nlp = spacy.load("en_core_web_sm")
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for doc in nlp.pipe(texts):
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doc_bin.add(doc)
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bytes_data = doc_bin.to_bytes()
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# Deserialize later, e.g. in a new process
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nlp = spacy.blank("en")
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doc_bin = DocBin().from_bytes(bytes_data)
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docs = list(doc_bin.get_docs(nlp.vocab))
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```
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If `store_user_data` is set to `True`, the `Doc.user_data` will be serialized as
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well, which includes the values of
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[extension attributes](/usage/processing-pipelines#custom-components-attributes)
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(if they're serializable with msgpack).
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<Infobox title="Important note on serializing extension attributes" variant="warning">
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Including the `Doc.user_data` and extension attributes will only serialize the
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**values** of the attributes. To restore the values and access them via the
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`doc._.` property, you need to register the global attribute on the `Doc` again.
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```python
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docs = list(doc_bin.get_docs(nlp.vocab))
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Doc.set_extension("my_custom_attr", default=None)
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print([doc._.my_custom_attr for doc in docs])
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```
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</Infobox>
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### Using Pickle {#pickle}
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> #### Example
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>
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> ```python
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> doc = nlp("This is a text.")
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> data = pickle.dumps(doc)
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> ```
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When pickling spaCy's objects like the [`Doc`](/api/doc) or the
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[`EntityRecognizer`](/api/entityrecognizer), keep in mind that they all require
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the shared [`Vocab`](/api/vocab) (which includes the string to hash mappings,
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label schemes and optional vectors). This means that their pickled
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representations can become very large, especially if you have word vectors
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loaded, because it won't only include the object itself, but also the entire
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shared vocab it depends on.
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If you need to pickle multiple objects, try to pickle them **together** instead
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of separately. For instance, instead of pickling all pipeline components, pickle
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the entire pipeline once. And instead of pickling several `Doc` objects
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separately, pickle a list of `Doc` objects. Since they all share a reference to
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the _same_ `Vocab` object, it will only be included once.
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```python
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### Pickling objects with shared data {highlight="8-9"}
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doc1 = nlp("Hello world")
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doc2 = nlp("This is a test")
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doc1_data = pickle.dumps(doc1)
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doc2_data = pickle.dumps(doc2)
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print(len(doc1_data) + len(doc2_data)) # 6636116 😞
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doc_data = pickle.dumps([doc1, doc2])
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print(len(doc_data)) # 3319761 😃
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```
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<Infobox title="Pickling spans and tokens" variant="warning">
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Pickling `Token` and `Span` objects isn't supported. They're only views of the
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`Doc` and can't exist on their own. Pickling them would always mean pulling in
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the parent document and its vocabulary, which has practically no advantage over
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pickling the parent `Doc`.
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```diff
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- data = pickle.dumps(doc[10:20])
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+ data = pickle.dumps(doc)
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```
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If you really only need a span – for example, a particular sentence – you can
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use [`Span.as_doc`](/api/span#as_doc) to make a copy of it and convert it to a
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`Doc` object. However, note that this will not let you recover contextual
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information from _outside_ the span.
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```diff
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+ span_doc = doc[10:20].as_doc()
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data = pickle.dumps(span_doc)
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```
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</Infobox>
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## Implementing serialization methods {#serialization-methods}
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When you call [`nlp.to_disk`](/api/language#to_disk),
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[`nlp.from_disk`](/api/language#from_disk) or load a model package, spaCy will
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iterate over the components in the pipeline, check if they expose a `to_disk` or
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`from_disk` method and if so, call it with the path to the model directory plus
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the string name of the component. For example, if you're calling
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`nlp.to_disk("/path")`, the data for the named entity recognizer will be saved
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in `/path/ner`.
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If you're using custom pipeline components that depend on external data – for
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example, model weights or terminology lists – you can take advantage of spaCy's
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built-in component serialization by making your custom component expose its own
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`to_disk` and `from_disk` or `to_bytes` and `from_bytes` methods. When an `nlp`
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object with the component in its pipeline is saved or loaded, the component will
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then be able to serialize and deserialize itself. The following example shows a
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custom component that keeps arbitrary JSON-serializable data, allows the user to
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add to that data and saves and loads the data to and from a JSON file.
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> #### Real-world example
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>
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> To see custom serialization methods in action, check out the new
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> [`EntityRuler`](/api/entityruler) component and its
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> [source](https://github.com/explosion/spaCy/tree/master/spacy/pipeline/entityruler.py).
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> Patterns added to the component will be saved to a `.jsonl` file if the
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> pipeline is serialized to disk, and to a bytestring if the pipeline is
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> serialized to bytes. This allows saving out a model with a rule-based entity
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> recognizer and including all rules _with_ the model data.
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```python
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### {highlight="14-18,20-25"}
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@Language.factory("my_component")
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class CustomComponent:
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def __init__(self):
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self.data = []
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def __call__(self, doc):
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# Do something to the doc here
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return doc
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def add(self, data):
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# Add something to the component's data
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self.data.append(data)
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def to_disk(self, path, **kwargs):
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# This will receive the directory path + /my_component
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data_path = path / "data.json"
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with data_path.open("w", encoding="utf8") as f:
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f.write(json.dumps(self.data))
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def from_disk(self, path, **cfg):
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# This will receive the directory path + /my_component
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data_path = path / "data.json"
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with data_path.open("r", encoding="utf8") as f:
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self.data = json.loads(f)
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return self
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```
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After adding the component to the pipeline and adding some data to it, we can
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serialize the `nlp` object to a directory, which will call the custom
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component's `to_disk` method.
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```python
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### {highlight="2-4"}
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nlp = spacy.load("en_core_web_sm")
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my_component = nlp.add_pipe("my_component")
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my_component.add({"hello": "world"})
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nlp.to_disk("/path/to/model")
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```
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The contents of the directory would then look like this.
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`CustomComponent.to_disk` converted the data to a JSON string and saved it to a
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file `data.json` in its subdirectory:
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```yaml
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### Directory structure {highlight="2-3"}
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└── /path/to/model
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├── my_component # data serialized by "my_component"
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| └── data.json
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├── ner # data for "ner" component
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├── parser # data for "parser" component
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├── tagger # data for "tagger" component
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├── vocab # model vocabulary
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├── meta.json # model meta.json
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├── config.cfg # model config
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└── tokenizer # tokenization rules
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```
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When you load the data back in, spaCy will call the custom component's
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`from_disk` method with the given file path, and the component can then load the
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contents of `data.json`, convert them to a Python object and restore the
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component state. The same works for other types of data, of course – for
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instance, you could add a
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[wrapper for a model](/usage/processing-pipelines#wrapping-models-libraries)
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trained with a different library like TensorFlow or PyTorch and make spaCy load
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its weights automatically when you load the model package.
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<Infobox title="Important note on loading custom components" variant="warning">
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When you load back a model with custom components, make sure that the components
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are **available** and that the [`@Language.component`](/api/language#component)
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or [`@Language.factory`](/api/language#factory) decorators are executed _before_
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your model is loaded back. Otherwise, spaCy won't know how to resolve the string
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name of a component factory like `"my_component"` back to a function. For more
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details, see the documentation on
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[adding factories](/usage/processing-pipelines#custom-components-factories) or
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use [entry points](#entry-points) to make your extension package expose your
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custom components to spaCy automatically.
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</Infobox>
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## Using entry points {#entry-points new="2.1"}
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Entry points let you expose parts of a Python package you write to other Python
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packages. This lets one application easily customize the behavior of another, by
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exposing an entry point in its `setup.py`. For a quick and fun intro to entry
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points in Python, check out
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[this excellent blog post](https://amir.rachum.com/blog/2017/07/28/python-entry-points/).
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spaCy can load custom function from several different entry points to add
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pipeline component factories, language classes and other settings. To make spaCy
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use your entry points, your package needs to expose them and it needs to be
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installed in the same environment – that's it.
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| Entry point | Description |
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| ------------------------------------------------------------------------------ | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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| [`spacy_factories`](#entry-points-components) | Group of entry points for pipeline component factories, keyed by component name. Can be used to expose custom components defined by another package. |
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| [`spacy_languages`](#entry-points-languages) | Group of entry points for custom [`Language` subclasses](/usage/adding-languages), keyed by language shortcut. |
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| `spacy_lookups` <Tag variant="new">2.2</Tag> | Group of entry points for custom [`Lookups`](/api/lookups), including lemmatizer data. Used by spaCy's [`spacy-lookups-data`](https://github.com/explosion/spacy-lookups-data) package. |
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| [`spacy_displacy_colors`](#entry-points-displacy) <Tag variant="new">2.2</Tag> | Group of entry points of custom label colors for the [displaCy visualizer](/usage/visualizers#ent). The key name doesn't matter, but it should point to a dict of labels and color values. Useful for custom models that predict different entity types. |
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### Custom components via entry points {#entry-points-components}
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When you load a model, spaCy will generally use the model's `config.cfg` to set
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up the language class and construct the pipeline. The pipeline is specified as a
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list of strings, e.g. `pipeline = ["tagger", "paser", "ner"]`. For each of those
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strings, spaCy will call `nlp.add_pipe` and look up the name in all factories
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defined by the decorators [`@Language.component`](/api/language#component) and
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[`@Language.factory`](/api/language#factory). This means that you have to import
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your custom components _before_ loading the model.
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Using entry points, model packages and extension packages can define their own
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`"spacy_factories"`, which will be loaded automatically in the background when
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the `Language` class is initialized. So if a user has your package installed,
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they'll be able to use your components – even if they **don't import them**!
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To stick with the theme of
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[this entry points blog post](https://amir.rachum.com/blog/2017/07/28/python-entry-points/),
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consider the following custom spaCy
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[pipeline component](/usage/processing-pipelines#custom-coponents) that prints a
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snake when it's called:
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> #### Package directory structure
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>
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> ```yaml
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> ├── snek.py # the extension code
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> └── setup.py # setup file for pip installation
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> ```
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```python
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### snek.py
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from spacy.language import Language
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snek = """
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--..,_ _,.--.
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`'.'. .'`__ o `;__. {text}
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'.'. .'.'` '---'` `
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'.`'--....--'`.'
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`'--....--'`
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"""
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@Language.component("snek")
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def snek_component(doc):
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print(snek.format(text=doc.text))
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return doc
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```
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Since it's a very complex and sophisticated module, you want to split it off
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into its own package so you can version it and upload it to PyPi. You also want
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your custom model to be able to define `pipeline = ["snek"]` in its
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`config.cfg`. For that, you need to be able to tell spaCy where to find the
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component `"snek"`. If you don't do this, spaCy will raise an error when you try
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to load the model because there's no built-in `"snek"` component. To add an
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entry to the factories, you can now expose it in your `setup.py` via the
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`entry_points` dictionary:
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> #### Entry point syntax
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>
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> Python entry points for a group are formatted as a **list of strings**, with
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> each string following the syntax of `name = module:object`. In this example,
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> the created entry point is named `snek` and points to the function
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> `snek_component` in the module `snek`, i.e. `snek.py`.
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```python
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### setup.py {highlight="5-7"}
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from setuptools import setup
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setup(
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name="snek",
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entry_points={
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"spacy_factories": ["snek = snek:snek_component"]
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}
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)
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```
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The same package can expose multiple entry points, by the way. To make them
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available to spaCy, all you need to do is install the package in your
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environment:
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```bash
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$ python setup.py develop
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```
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spaCy is now able to create the pipeline component `"snek"` – even though you
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never imported `snek_component`. When you save the
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[`nlp.config`](/api/language#config) to disk, it includes an entry for your
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`"snek"` component and any model you train with this config will include the
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component and know how to load it – if your `snek` package is installed.
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> #### config.cfg (excerpt)
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>
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> ```diff
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> [nlp]
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> lang = "en"
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> + pipeline = ["snek"]
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>
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> [components]
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>
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> + [components.snek]
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> + factory = "snek"
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> ```
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```
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>>> from spacy.lang.en import English
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>>> nlp = English()
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>>> nlp.add_pipe("snek") # this now works! 🐍🎉
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>>> doc = nlp("I am snek")
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--..,_ _,.--.
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`'.'. .'`__ o `;__. I am snek
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'.'. .'.'` '---'` `
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'.`'--....--'`.'
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`'--....--'`
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```
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Instead of making your snek component a simple
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[stateless component](/usage/processing-pipelines#custom-components-simple), you
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could also make it a
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[factory](/usage/processing-pipelines#custom-components-factories) that takes
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settings. Your users can then pass in an optional `config` when they add your
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component to the pipeline and customize its appearance – for example, the
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`snek_style`.
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> #### config.cfg (excerpt)
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>
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> ```diff
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> [components.snek]
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> factory = "snek"
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> + snek_style = "basic"
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> ```
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```python
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SNEKS = {"basic": snek, "cute": cute_snek} # collection of sneks
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@Language.factory("snek", default_config={"snek_style": "basic"})
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class SnekFactory:
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def __init__(self, nlp: Language, name: str, snek_style: str):
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self.nlp = nlp
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self.snek_style = snek_style
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self.snek = SNEKS[self.snek_style]
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def __call__(self, doc):
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print(self.snek)
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return doc
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```
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```diff
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### setup.py
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entry_points={
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- "spacy_factories": ["snek = snek:snek_component"]
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+ "spacy_factories": ["snek = snek:SnekFactory"]
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}
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```
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The factory can also implement other pipeline component like `to_disk` and
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`from_disk` for serialization, or even `update` to make the component trainable.
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If a component exposes a `from_disk` method and is included in a model's
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pipeline, spaCy will call it on load. This lets you ship custom data with your
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model. When you save out a model using `nlp.to_disk` and the component exposes a
|
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`to_disk` method, it will be called with the disk path.
|
||
|
||
```python
|
||
def to_disk(self, path, exclude=tuple()):
|
||
snek_path = path / "snek.txt"
|
||
with snek_path.open("w", encoding="utf8") as snek_file:
|
||
snek_file.write(self.snek)
|
||
|
||
def from_disk(self, path, exclude=tuple()):
|
||
snek_path = path / "snek.txt"
|
||
with snek_path.open("r", encoding="utf8") as snek_file:
|
||
self.snek = snek_file.read()
|
||
return self
|
||
```
|
||
|
||
The above example will serialize the current snake in a `snek.txt` in the model
|
||
data directory. When a model using the `snek` component is loaded, it will open
|
||
the `snek.txt` and make it available to the component.
|
||
|
||
### Custom language classes via entry points {#entry-points-languages}
|
||
|
||
To stay with the theme of the previous example and
|
||
[this blog post on entry points](https://amir.rachum.com/blog/2017/07/28/python-entry-points/),
|
||
let's imagine you wanted to implement your own `SnekLanguage` class for your
|
||
custom model – but you don't necessarily want to modify spaCy's code to add a
|
||
language. In your package, you could then implement the following
|
||
[custom language subclass](/usage/linguistic-features#language-subclass):
|
||
|
||
```python
|
||
### snek.py
|
||
from spacy.language import Language
|
||
|
||
class SnekDefaults(Language.Defaults):
|
||
stop_words = set(["sss", "hiss"])
|
||
|
||
class SnekLanguage(Language):
|
||
lang = "snk"
|
||
Defaults = SnekDefaults
|
||
```
|
||
|
||
Alongside the `spacy_factories`, there's also an entry point option for
|
||
`spacy_languages`, which maps language codes to language-specific `Language`
|
||
subclasses:
|
||
|
||
```diff
|
||
### setup.py
|
||
from setuptools import setup
|
||
|
||
setup(
|
||
name="snek",
|
||
entry_points={
|
||
"spacy_factories": ["snek = snek:SnekFactory"],
|
||
+ "spacy_languages": ["snk = snek:SnekLanguage"]
|
||
}
|
||
)
|
||
```
|
||
|
||
In spaCy, you can then load the custom `snk` language and it will be resolved to
|
||
`SnekLanguage` via the custom entry point. This is especially relevant for model
|
||
packages you train, which could then specify `lang = snk` in their `config.cfg`
|
||
without spaCy raising an error because the language is not available in the core
|
||
library.
|
||
|
||
### Custom displaCy colors via entry points {#entry-points-displacy new="2.2"}
|
||
|
||
If you're training a named entity recognition model for a custom domain, you may
|
||
end up training different labels that don't have pre-defined colors in the
|
||
[`displacy` visualizer](/usage/visualizers#ent). The `spacy_displacy_colors`
|
||
entry point lets you define a dictionary of entity labels mapped to their color
|
||
values. It's added to the pre-defined colors and can also overwrite existing
|
||
values.
|
||
|
||
> #### Domain-specific NER labels
|
||
>
|
||
> Good examples of models with domain-specific label schemes are
|
||
> [scispaCy](/universe/project/scispacy) and
|
||
> [Blackstone](/universe/project/blackstone).
|
||
|
||
```python
|
||
### snek.py
|
||
displacy_colors = {"SNEK": "#3dff74", "HUMAN": "#cfc5ff"}
|
||
```
|
||
|
||
Given the above colors, the entry point can be defined as follows. Entry points
|
||
need to have a name, so we use the key `colors`. However, the name doesn't
|
||
matter and whatever is defined in the entry point group will be used.
|
||
|
||
```diff
|
||
### setup.py
|
||
from setuptools import setup
|
||
|
||
setup(
|
||
name="snek",
|
||
entry_points={
|
||
+ "spacy_displacy_colors": ["colors = snek:displacy_colors"]
|
||
}
|
||
)
|
||
```
|
||
|
||
After installing the package, the custom colors will be used when visualizing
|
||
text with `displacy`. Whenever the label `SNEK` is assigned, it will be
|
||
displayed in `#3dff74`.
|
||
|
||
import DisplaCyEntSnekHtml from 'images/displacy-ent-snek.html'
|
||
|
||
<Iframe title="displaCy visualization of entities" html={DisplaCyEntSnekHtml} height={100} />
|
||
|
||
## Saving, loading and distributing models {#models}
|
||
|
||
After training your model, you'll usually want to save its state, and load it
|
||
back later. You can do this with the
|
||
[`Language.to_disk()`](/api/language#to_disk) method:
|
||
|
||
```python
|
||
nlp.to_disk('/home/me/data/en_example_model')
|
||
```
|
||
|
||
The directory will be created if it doesn't exist, and the whole pipeline will
|
||
be written out. To make the model more convenient to deploy, we recommend
|
||
wrapping it as a Python package.
|
||
|
||
### Generating a model package {#models-generating}
|
||
|
||
<Infobox title="Important note" variant="warning">
|
||
|
||
The model packages are **not suitable** for the public
|
||
[pypi.python.org](https://pypi.python.org) directory, which is not designed for
|
||
binary data and files over 50 MB. However, if your company is running an
|
||
**internal installation** of PyPi, publishing your models on there can be a
|
||
convenient way to share them with your team.
|
||
|
||
</Infobox>
|
||
|
||
spaCy comes with a handy CLI command that will create all required files, and
|
||
walk you through generating the meta data. You can also create the meta.json
|
||
manually and place it in the model data directory, or supply a path to it using
|
||
the `--meta` flag. For more info on this, see the [`package`](/api/cli#package)
|
||
docs.
|
||
|
||
> #### meta.json (example)
|
||
>
|
||
> ```json
|
||
> {
|
||
> "name": "example_model",
|
||
> "lang": "en",
|
||
> "version": "1.0.0",
|
||
> "spacy_version": ">=2.0.0,<3.0.0",
|
||
> "description": "Example model for spaCy",
|
||
> "author": "You",
|
||
> "email": "you@example.com",
|
||
> "license": "CC BY-SA 3.0"
|
||
> }
|
||
> ```
|
||
|
||
```bash
|
||
$ python -m spacy package /home/me/data/en_example_model /home/me/my_models
|
||
```
|
||
|
||
This command will create a model package directory and will run
|
||
`python setup.py sdist` in that directory to create `.tar.gz` archive of your
|
||
model package that can be installed using `pip install`.
|
||
|
||
```yaml
|
||
### Directory structure
|
||
└── /
|
||
├── MANIFEST.in # to include meta.json
|
||
├── meta.json # model meta data
|
||
├── setup.py # setup file for pip installation
|
||
├── en_example_model # model directory
|
||
│ ├── __init__.py # init for pip installation
|
||
│ └── en_example_model-1.0.0 # model data
|
||
└── dist
|
||
└── en_example_model-1.0.0.tar.gz # installable package
|
||
```
|
||
|
||
You can also find templates for all files in the
|
||
[`cli/package.py` source](https://github.com/explosion/spacy/tree/master/spacy/cli/package.py).
|
||
If you're creating the package manually, keep in mind that the directories need
|
||
to be named according to the naming conventions of `lang_name` and
|
||
`lang_name-version`.
|
||
|
||
### Customizing the model setup {#models-custom}
|
||
|
||
The `load()` method that comes with our model package templates will take care
|
||
of putting all this together and returning a `Language` object with the loaded
|
||
pipeline and data. If your model requires custom
|
||
[pipeline components](/usage/processing-pipelines) or a custom language class,
|
||
you can also **ship the code with your model** and include it in the
|
||
`__init__.py` – for example, to register custom
|
||
[pipeline components](/usage/processing-pipelines#custom-components) before the
|
||
`nlp` object is created.
|
||
|
||
### Loading a custom model package {#loading}
|
||
|
||
To load a model from a data directory, you can use
|
||
[`spacy.load()`](/api/top-level#spacy.load) with the local path. This will look
|
||
for a meta.json in the directory and use the `lang` and `pipeline` settings to
|
||
initialize a `Language` class with a processing pipeline and load in the model
|
||
data.
|
||
|
||
```python
|
||
nlp = spacy.load("/path/to/model")
|
||
```
|
||
|
||
If you want to **load only the binary data**, you'll have to create a `Language`
|
||
class and call [`from_disk`](/api/language#from_disk) instead.
|
||
|
||
```python
|
||
nlp = spacy.blank("en").from_disk("/path/to/data")
|
||
```
|
||
|
||
<!-- TODO: point to spaCy projects? -->
|