Commit Graph

2610 Commits

Author SHA1 Message Date
Matthew Honnibal bda4bb0184
Try disabling pretraining tests to probe windows ci failure (#13646) 2024-10-02 01:01:40 +02:00
Matthew Honnibal 59ac7e6bdb Format 2024-09-09 11:22:52 +02:00
Matthew Honnibal 1b8d560d0e
Support 'memory zones' for user memory management (#13621)
Add a context manage nlp.memory_zone(), which will begin
memory_zone() blocks on the vocab, string store, and potentially
other components.

Example usage:

```
with nlp.memory_zone():
    for text in nlp.pipe(texts):
        do_something(doc)
# do_something(doc) <-- Invalid
```

Once the memory_zone() block expires, spaCy will free any shared
resources that were allocated for the text-processing that occurred
within the memory_zone. If you create Doc objects within a memory
zone, it's invalid to access them once the memory zone is expired.

The purpose of this is that spaCy creates and stores Lexeme objects
in the Vocab that can be shared between multiple Doc objects. It also
interns strings. Normally, spaCy can't know when all Doc objects using
a Lexeme are out-of-scope, so new Lexemes accumulate in the vocab,
causing memory pressure.

Memory zones solve this problem by telling spaCy "okay none of the
documents allocated within this block will be accessed again". This
lets spaCy free all new Lexeme objects and other data that were
created during the block.

The mechanism is general, so memory_zone() context managers can be
added to other components that could benefit from them, e.g. pipeline
components.

I experimented with adding memory zone support to the tokenizer as well,
for its cache. However, this seems unnecessarily complicated. It makes
more sense to just stick a limit on the cache size. This lets spaCy
benefit from the efficiency advantage of the cache better, because
we can maintain a (bounded) cache even if only small batches of
documents are being processed.
2024-09-09 11:19:39 +02:00
ykyogoku 608f65ce40
add Tibetan (#13510) 2024-09-09 11:18:03 +02:00
Muzaffer Cikay acbf2a428f
Add Kurdish Kurmanji language (#13561)
* Add Kurdish Kurmanji language

* Add lex_attrs
2024-09-09 11:15:40 +02:00
Alex Strick van Linschoten 045cd43c3f
Fix typos in docs (#13466)
* fix typos

* prettier formatting

---------

Co-authored-by: svlandeg <svlandeg@github.com>
2024-04-29 11:10:17 +02:00
Sofie Van Landeghem 2e2334632b
Fix use_gold_ents behaviour for EntityLinker (#13400)
* fix type annotation in docs

* only restore entities after loss calculation

* restore entities of sample in initialization

* rename overfitting function

* fix EL scorer

* Relax test

* fix formatting

* Update spacy/pipeline/entity_linker.py

Co-authored-by: Raphael Mitsch <r.mitsch@outlook.com>

* rename to _ensure_ents

* further rename

* allow for scorer to be None

---------

Co-authored-by: Raphael Mitsch <r.mitsch@outlook.com>
2024-04-16 12:00:22 +02:00
Matthew Honnibal 0518c36f04
Sanitize direct download (#13313)
The 'direct' option in 'spacy download' is supposed to only download from our model releases repository. However, users were able to pass in a relative path, allowing download from arbitrary repositories. This meant that a service that sourced strings from user input and which used the direct option would allow users to install arbitrary packages.
2024-02-20 13:17:51 +01:00
Daniël de Kok fdfdbcd9f4
Make `Language.pipe` workers exit cleanly (#13321)
Also warn when any worker exited with a non-zero exit code and modify
test to ensure that workers exit cleanly by default.
2024-02-12 14:39:38 +01:00
Daniël de Kok 2dbb332cea
`TextCatParametricAttention.v1`: set key transform dimensions (#13249)
* TextCatParametricAttention.v1: set key transform dimensions

This is necessary for tok2vec implementations that initialize
lazily (e.g. curated transformers).

* Add lazily-initialized tok2vec to simulate transformers

Add a lazily-initialized tok2vec to the tests and test the current
textcat models with it.

Fix some additional issues found using this test.

* isort

* Add `test.` prefix to `LazyInitTok2Vec.v1`
2024-02-02 13:01:59 +01:00
Daniël de Kok 68d7841df5
Extension serialization attr tests: add teardown (#13284)
The doc/token extension serialization tests add extensions that are not
serializable with pickle. This didn't cause issues before due to the
implicit run order of tests. However, test ordering has changed with
pytest 8.0.0, leading to failed tests in test_language.

Update the fixtures in the extension serialization tests to do proper
teardown and remove the extensions.
2024-01-29 13:51:56 +01:00
Daniël de Kok afac7fb650
test_find_available_port: use port 5001 (#13255)
macOS now uses port 5000 for the AirPlay receiver functionality, so this
test will always fail on a macOS desktop (unless AirPlay receiver
functionality is disabled like in CI).
2024-01-23 20:11:16 +01:00
Daniël de Kok e2a3952de5
Add spacy.TextCatParametricAttention.v1 (#13201)
* Add spacy.TextCatParametricAttention.v1

This layer provides is a simplification of the ensemble classifier that
only uses paramteric attention. We have found empirically that with a
sufficient amount of training data, using the ensemble classifier with
BoW does not provide significant improvement in classifier accuracy.
However, plugging in a BoW classifier does reduce GPU training and
inference performance substantially, since it uses a GPU-only kernel.

* Fix merge fallout
2024-01-02 10:03:06 +01:00
Daniël de Kok 7ebba86402
Add TextCatReduce.v1 (#13181)
* Add TextCatReduce.v1

This is a textcat classifier that pools the vectors generated by a
tok2vec implementation and then applies a classifier to the pooled
representation. Three reductions are supported for pooling: first, max,
and mean. When multiple reductions are enabled, the reductions are
concatenated before providing them to the classification layer.

This model is a generalization of the TextCatCNN model, which only
supports mean reductions and is a bit of a misnomer, because it can also
be used with transformers. This change also reimplements TextCatCNN.v2
using the new TextCatReduce.v1 layer.

* Doc fixes

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Fully specify `TextCatCNN` <-> `TextCatReduce` equivalence

* Move TextCatCNN docs to legacy, in prep for moving to spacy-legacy

* Add back a test for TextCatCNN.v2

* Replace TextCatCNN in pipe configurations and templates

* Add an infobox to the `TextCatReduce` section with an `TextCatCNN` anchor

* Add last reduction (`use_reduce_last`)

* Remove non-working TextCatCNN Netlify redirect

* Revert layer changes for the quickstart

* Revert one more quickstart change

* Remove unused import

* Fix docstring

* Fix setting name in error message

---------

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2023-12-21 11:00:06 +01:00
Daniël de Kok da7ad97519
Update `TextCatBOW` to use the fixed `SparseLinear` layer (#13149)
* Update `TextCatBOW` to use the fixed `SparseLinear` layer

A while ago, we fixed the `SparseLinear` layer to use all available
parameters: https://github.com/explosion/thinc/pull/754

This change updates `TextCatBOW` to `v3` which uses the new
`SparseLinear_v2` layer. This results in a sizeable improvement on a
text categorization task that was tested.

While at it, this `spacy.TextCatBOW.v3` also adds the `length_exponent`
option to make it possible to change the hidden size. Ideally, we'd just
have an option called `length`. But the way that `TextCatBOW` uses
hashes results in a non-uniform distribution of parameters when the
length is not a power of two.

* Replace TexCatBOW `length_exponent` parameter by `length`

We now round up the length to the next power of two if it isn't
a power of two.

* Remove some tests for TextCatBOW.v2

* Fix missing import
2023-11-29 09:11:54 +01:00
Lise b6e022381d
Feature/nn and fo language extensions (#13116)
* add language extensions for norwegian nynorsk and faroese

* update docstring for nn/examples.py

* use relative imports

* add fo and nn tokenizers to pytest fixtures

* add unittests for fo and nn and fix bug in nn

* remove module docstring from fo/__init__.py

* add comments about example sentences' origin

* add license information to faroese data credit

* format unittests using black

* add __init__ files to test/lang/nn and tests/lang/fo

* fix import order and use relative imports in fo/__nit__.py and nn/__init__.py

* Make the tests a bit more compact

* Add fo and nn to website languages

* Add note about jul.

* Add "jul." as exception

---------

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2023-11-20 07:49:59 +01:00
Adriane Boyd 0c25725359
Update Tokenizer.explain for special cases with whitespace (#13086)
* Update Tokenizer.explain for special cases with whitespace

Update `Tokenizer.explain` to skip special case matches if the exact
text has not been matched due to intervening whitespace.

Enable fuzzy `Tokenizer.explain` tests with additional whitespace
normalization.

* Add unit test for special cases with whitespace, xfail fuzzy tests again
2023-11-06 17:29:59 +01:00
Adriane Boyd ff9ddb6a07
Unskip python 3.12 remote tests (#13110) 2023-11-06 11:59:45 +01:00
Raphael Mitsch c4e2daf6ef
Fix displacy span stacking (#13068)
* Fix displacy span stacking.

* Format. Remove counter.

* Remove test files.

* Add unit test. Refactor to allow for unit test.

* Fix off-by-one error in tests.
2023-11-02 12:02:18 +01:00
Adriane Boyd ea1befa8ff
Support Any comparisons for Token and Span (#13058)
* Support Any comparisons for Token and Span

* Preserve previous behavior for None
2023-10-12 11:53:33 +02:00
Adriane Boyd 77c568e524
Restore spacy.cli.project API (#13053)
* Restore spacy.cli.project API

* Fix typing errors, add simple import test
2023-10-10 15:35:25 +02:00
Adriane Boyd 6d0185f7fb Revert "Load the cli module lazily for spacy.info (#12962)"
This reverts commit beda27a91e.
2023-10-04 12:33:33 +02:00
Adriane Boyd 1b043dde3f Revert "disable tests until 3.7 models are available"
This reverts commit 991bcc111e.
2023-10-01 18:48:31 +02:00
Adriane Boyd 406794a081 Merge remote-tracking branch 'upstream/master' into chore/update-develop-from-master-v3.7-1 2023-09-28 15:09:06 +02:00
Daniël de Kok beda27a91e
Load the cli module lazily for spacy.info (#12962)
* Load the cli module lazily for spacy.info

This avoids that the `spacy` module cannot be imported when the
users chooses not to install `typer`/`requests`.

* Add test

---------

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2023-09-28 11:36:44 +02:00
Adriane Boyd 36d4767aca
Skip project remotes test for python 3.12 (#12980)
`weasel` (using `cloudpathlib`) does not currently support remote paths
for python 3.12.
2023-09-13 13:16:05 +02:00
Sofie Van Landeghem 869cc4ab0b
warn when an unsupported/unknown key is given to the dependency matcher (#12928) 2023-08-22 09:03:35 +02:00
Adriane Boyd 198488ee86
Extend to weasel v0.3 (#12908)
* Extend to weasel v0.3

* Clean up unused imports in test_cli
2023-08-16 17:36:53 +02:00
Adriane Boyd 245e2ddc25
Allow pydantic v2 using transitional v1 support (#12888) 2023-08-08 11:27:28 +02:00
Adriane Boyd 45af8a5dcf
Update br tags (#12882)
* Fix displacy br tag

* Prefer <br>, also update package CLI
2023-08-04 10:52:41 +02:00
Peter Baumgartner a0a195688f
Tests for CLI app - `init config` generates `train`-able config (#12173)
* remove migration support form

* initial test commit

* add fixture

* add combo test

* pull out parameter example data

* fix formatting on examples

* remove unused import

* remove unncessary fmt:off instructions

* only set logger level if verbose flag is explicitly set

---------

Co-authored-by: svlandeg <svlandeg@github.com>
2023-07-31 14:45:04 +02:00
Sofie Van Landeghem c9e9dccf79
Add displaCy data structures to docs (2) (#12875)
* Add data structures to docs

* Adjusted descriptions for more consistency

* Add _optional_ flag to parameters

* Add tests and adjust optional title key in doc

* Add title to dep visualizations

* fix typo

---------

Co-authored-by: thomashacker <EdwardSchmuhl@web.de>
2023-07-31 10:47:57 +02:00
Victoria 49055ed7c8
Add cli for finding locations of registered func (#12757)
* Add cli for finding locations of registered func

* fixes: naming and typing

* isort

* update naming

* remove to find-function

* remove file:// bit

* use registry name if given and exit gracefully if a registry was not found

* clean up failure msg

* specify registry_name options

* mypy fixes

* return location for internal usage

* add documentation

* more mypy fixes

* clean up example

* add section to menu

* add tests

---------

Co-authored-by: svlandeg <svlandeg@github.com>
2023-07-31 09:39:00 +02:00
Adriane Boyd 5888afa884
Update numpy build constraints for numpy 1.25 (#12839)
* Update numpy build constraints for numpy 1.25

Starting in numpy 1.25 (see
https://github.com/numpy/numpy/releases/tag/v1.25.0), the numpy C API is
backwards-compatible by default.

For python 3.9+, we should be able to drop the specific numpy build
requirements and use `numpy>=1.25`, which is currently
backwards-compatible to `numpy>=1.19`.

In the future, the python <3.9 requirements could be dropped and the
lower numpy pin could correspond to the oldest supported version for the
current lower python pin.

* Turn off fail-fast

* Revert "Turn off fail-fast"

This reverts commit 4306f516bc.

* Update for python 3.6

* Fix typo
2023-07-24 10:32:56 +02:00
svlandeg 79ec68f01b Merge branch 'upstream_master' into sync_develop 2023-07-19 12:08:52 +02:00
Basile Dura b0228d8ea6
ci: add cython linter (#12694)
* chore: add cython-linter dev dependency

* fix: lexeme.pyx

* fix: morphology.pxd

* fix: tokenizer.pxd

* fix: vocab.pxd

* fix: morphology.pxd (line length)

* ci: add cython-lint

* ci: fix cython-lint call

* Fix kb/candidate.pyx.

* Fix kb/kb.pyx.

* Fix kb/kb_in_memory.pyx.

* Fix kb.

* Fix training/ partially.

* Fix training/. Ignore trailing whitespaces and too long lines.

* Fix ml/.

* Fix matcher/.

* Fix pipeline/.

* Fix tokens/.

* Fix build errors. Fix vocab.pyx.

* Fix cython-lint install and run.

* Fix lexeme.pyx, parts_of_speech.pxd, vectors.pyx. Temporarily disable cython-lint execution.

* Fix attrs.pyx, lexeme.pyx, symbols.pxd, isort issues.

* Make cython-lint install conditional. Fix tokenizer.pyx.

* Fix remaining files. Reenable cython-lint check.

* Readded parentheses.

* Fix test_build_dependencies().

* Add explanatory comment to cython-lint execution.

---------

Co-authored-by: Raphael Mitsch <r.mitsch@outlook.com>
2023-07-19 12:03:31 +02:00
Adriane Boyd 6bf7c65329
Update matcher pattern validation tests (#12835)
- parametrize over individual token patterns (as originally intended, as
far as I can tell)
- add a test for lowercase `in` in patterns
2023-07-18 10:00:07 +02:00
Connor Brinton 0566c3a166
🐛 Escape annotated HTML tags in span renderer (#12817)
These changes add a missing call to `escape_html` in the displaCy span
renderer. Previously span-annotated tokens would be inserted into the
page markup without being escaped, resulting in potentially incorrect
rendering. When I encountered this issue, it resulted in some docs and
span underlines being superimposed on top of properly rendered docs and
span underlines near the beginning of the visualization (due to an
unescaped `<span>` tag).
2023-07-13 17:33:05 +02:00
Sofie Van Landeghem b1b20bf69d
Replace projects functionality with weasel (#12769)
* Setting up weasel branch (#12456)

* remove project-specific functionality

* remove project-specific tests

* remove project-specific schemas

* remove project-specific information in about

* remove project-specific functions in util.py

* remove project-specific error strings

* remove project-specific CLI commands

* black formatting

* restore some functions that are used beyond projects

* remove project imports

* remove imports

* remove remote_storage tests

* remove one more project unit test

* update for PR 12394

* remove get_hash and get_checksum

* remove upload_ and download_file methods

* remove ensure_pathy

* revert clumsy fingers

* reinstate E970

* feat: use weasel as spacy project command (#12473)

* feat: use weasel as spacy project command

* build: use constrained requirement for weasel

* feat: add weasel to the library requirements

* build: update weasel to new version

* build: use specific weasel tag

* build: use weasel-0.1.0rc1 from PyPI

* fix: remove weasel from requirements.txt

* fix: requirements.txt and setup.cfg need to reflect each other

* feat: remove legacy spacy project code

* bump version

* further merge fixes

* isort

---------

Co-authored-by: Basile Dura <bdura@users.noreply.github.com>
2023-07-07 09:10:27 +02:00
svlandeg 991bcc111e disable tests until 3.7 models are available 2023-07-07 08:09:57 +02:00
Adriane Boyd a1191146f5 Revert "Temporarily skip tests for compat table"
This reverts commit dd5e00c735.
2023-07-06 12:47:50 +02:00
Adriane Boyd fb0da3e097
Support custom token/lexeme attribute for vectors (#12625)
* Support custom token/lexeme attribute for vectors

* Fix imports

* Back off to ORTH without Vectors.attr

* Fallback if vectors.attr doesn't exist

* Update docs
2023-06-28 09:43:14 +02:00
Adriane Boyd 337a360cc7
Use spans_ prefix for default span finder scores (#12753) 2023-06-27 19:32:17 +02:00
Adriane Boyd 65f6c9cd10
Support overriding registered functions in configs (#12623)
Support overriding registered functions in configs. Previously the registry name was parsed as a section name rather than as a registry name.
2023-06-27 17:36:33 +02:00
Adriane Boyd c067b5264c
Address issues with source with component names and replacing listeners (#12701)
When sourcing a component, the object from the original pipeline is added to the new pipeline as the same object. This creates a situation where there are several attributes that cannot be in sync between the original pipeline and the new pipeline at the same time for this one object:

* component.name
* component.listener_map / component.listening_components for tok2vec and transformer

When running replace_listeners on a component, the config is not updated correctly if the state of the component is incorrect for the current pipeline (in particular changes that should be applied from model.attrs["replace_listener_cfg"] as used in spacy-transformers) due to the fact that:

* find_listeners relies on component.name to set the name in the listener_map
* replace_listeners relies on listener_map to determine how to modify the configs

In addition, there are several places where pipeline components are modified and the listener map and/or internal component names aren't currently updated.

In cases where there is a component shared by two pipelines that cannot be in sync, this PR chooses to prioritize the most recently modified or initialized pipeline. There is no actual solution with the current source behavior that will make both pipelines usable, so the current pipeline is updated whenever components are added/renamed/removed or the pipeline is initialized for training.
2023-06-27 10:47:07 +02:00
Adriane Boyd e1664217f5
Add spancat_singlelabel to debug data CLI (#12749) 2023-06-26 10:25:20 +02:00
Adriane Boyd dd5e00c735 Temporarily skip tests for compat table 2023-06-21 12:59:36 +02:00
Daniël de Kok e2b70df012
Configure isort to use the Black profile, recursively isort the `spacy` module (#12721)
* Use isort with Black profile

* isort all the things

* Fix import cycles as a result of import sorting

* Add DOCBIN_ALL_ATTRS type definition

* Add isort to requirements

* Remove isort from build dependencies check

* Typo
2023-06-14 17:48:41 +02:00
Sofie Van Landeghem d65e3c31a6
use system-independent commands (#12693) 2023-06-08 11:43:36 +02:00
kadarakos c003aac29a
SpanFinder into spaCy from experimental (#12507)
* span finder integrated into spacy from experimental

* black

* isort

* black

* default spankey constant

* black

* Update spacy/pipeline/spancat.py

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* rename

* rename

* max_length and min_length as Optional[int] and strict checking

* black

* mypy fix for integer type infinity

* revert line order

* implement all comparison operators for inf int

* avoid two for loops over all docs by not precomputing

* interleave thresholding with span creation

* black

* revert to not interleaving (relized its faster)

* black

* Update spacy/errors.py

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* update dosctring

* enforce that the gold and predicted documents have the same text

* new error for ensuring reference and predicted texts are the same

* remove todo

* adjust test

* black

* handle misaligned tokenization

* return correct variable

* failing overfit test

* only use a single spans_key like in spancat

* black

* remove debug lines

* typo

* remove comment

* remove near duplicate reduntant method

* use the 'spans_key' variable name everywhere

* Update spacy/pipeline/span_finder.py

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* flaky test fix suggestion, hand set bias terms

* only test suggester and test result exhaustively

* make it clear that the span_finder_suggester is more general (not specific to span_finder)

* Update spacy/tests/pipeline/test_span_finder.py

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Apply suggestions from code review

* remove question comment

* move preset_spans_suggester test to spancat tests

* Add docs and unify default configs for spancat and span finder

* Add `allow_overlap=True` to span finder scorer

* Fix offset bug in set_annotations

* Ignore labels in span finder scorer

* Format

* Add span_finder to quickstart template

* Move settings to self.cfg, store min/max unset as None

* Remove debugging

* Update docstrings and docs

* Update spacy/pipeline/span_finder.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Fix imports

---------

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2023-06-07 15:52:28 +02:00