spaCy/spacy/_ml.py

# coding: utf8
from __future__ import unicode_literals

import numpy
from thinc.v2v import Model, Maxout, Softmax, Affine, ReLu
from thinc.t2t import ExtractWindow, ParametricAttention
from thinc.t2v import Pooling, sum_pool, mean_pool
from thinc.i2v import HashEmbed
from thinc.misc import Residual, FeatureExtracter
from thinc.misc import LayerNorm as LN
from thinc.api import add, layerize, chain, clone, concatenate, with_flatten
from thinc.api import with_getitem, flatten_add_lengths
from thinc.api import uniqued, wrap, noop
from thinc.linear.linear import LinearModel
from thinc.neural.ops import NumpyOps, CupyOps
from thinc.neural.util import get_array_module, copy_array
from thinc.neural.optimizers import Adam

from thinc import describe
from thinc.describe import Dimension, Synapses, Biases, Gradient
from thinc.neural._classes.affine import _set_dimensions_if_needed
import thinc.extra.load_nlp

from .attrs import ID, ORTH, LOWER, NORM, PREFIX, SUFFIX, SHAPE
from .errors import Errors, user_warning, Warnings
from . import util
from . import ml as new_ml


VECTORS_KEY = "spacy_pretrained_vectors"


def cosine(vec1, vec2):
    xp = get_array_module(vec1)
    norm1 = xp.linalg.norm(vec1)
    norm2 = xp.linalg.norm(vec2)
    if norm1 == 0.0 or norm2 == 0.0:
        return 0
    else:
        return vec1.dot(vec2) / (norm1 * norm2)


def create_default_optimizer(ops, **cfg):
    learn_rate = util.env_opt("learn_rate", 0.001)
    beta1 = util.env_opt("optimizer_B1", 0.9)
    beta2 = util.env_opt("optimizer_B2", 0.999)
    eps = util.env_opt("optimizer_eps", 1e-8)
    L2 = util.env_opt("L2_penalty", 1e-6)
    max_grad_norm = util.env_opt("grad_norm_clip", 1.0)
    optimizer = Adam(ops, learn_rate, L2=L2, beta1=beta1, beta2=beta2, eps=eps)
    optimizer.max_grad_norm = max_grad_norm
    optimizer.device = ops.device
    return optimizer


@layerize
def _flatten_add_lengths(seqs, pad=0, drop=0.0):
    ops = Model.ops
    lengths = ops.asarray([len(seq) for seq in seqs], dtype="i")

    def finish_update(d_X, sgd=None):
        return ops.unflatten(d_X, lengths, pad=pad)

    X = ops.flatten(seqs, pad=pad)
    return (X, lengths), finish_update


def _zero_init(model):
    def _zero_init_impl(self, *args, **kwargs):
        self.W.fill(0)

    model.on_init_hooks.append(_zero_init_impl)
    if model.W is not None:
        model.W.fill(0.0)
    return model


def with_cpu(ops, model):
    """Wrap a model that should run on CPU, transferring inputs and outputs
    as necessary."""
    model.to_cpu()

    def with_cpu_forward(inputs, drop=0.0):
        cpu_outputs, backprop = model.begin_update(_to_cpu(inputs), drop=drop)
        gpu_outputs = _to_device(ops, cpu_outputs)

        def with_cpu_backprop(d_outputs, sgd=None):
            cpu_d_outputs = _to_cpu(d_outputs)
            return backprop(cpu_d_outputs, sgd=sgd)

        return gpu_outputs, with_cpu_backprop

    return wrap(with_cpu_forward, model)


def _to_cpu(X):
    if isinstance(X, numpy.ndarray):
        return X
    elif isinstance(X, tuple):
        return tuple([_to_cpu(x) for x in X])
    elif isinstance(X, list):
        return [_to_cpu(x) for x in X]
    elif hasattr(X, "get"):
        return X.get()
    else:
        return X


def _to_device(ops, X):
    if isinstance(X, tuple):
        return tuple([_to_device(ops, x) for x in X])
    elif isinstance(X, list):
        return [_to_device(ops, x) for x in X]
    else:
        return ops.asarray(X)


class extract_ngrams(Model):
    def __init__(self, ngram_size, attr=LOWER):
        Model.__init__(self)
        self.ngram_size = ngram_size
        self.attr = attr

    def begin_update(self, docs, drop=0.0):
        batch_keys = []
        batch_vals = []
        for doc in docs:
            unigrams = doc.to_array([self.attr])
            ngrams = [unigrams]
            for n in range(2, self.ngram_size + 1):
                ngrams.append(self.ops.ngrams(n, unigrams))
            keys = self.ops.xp.concatenate(ngrams)
            keys, vals = self.ops.xp.unique(keys, return_counts=True)
            batch_keys.append(keys)
            batch_vals.append(vals)
        # The dtype here matches what thinc is expecting -- which differs per
        # platform (by int definition). This should be fixed once the problem
        # is fixed on Thinc's side.
        lengths = self.ops.asarray(
            [arr.shape[0] for arr in batch_keys], dtype=numpy.int_
        )
        batch_keys = self.ops.xp.concatenate(batch_keys)
        batch_vals = self.ops.asarray(self.ops.xp.concatenate(batch_vals), dtype="f")
        return (batch_keys, batch_vals, lengths), None


@describe.on_data(
    _set_dimensions_if_needed, lambda model, X, y: model.init_weights(model)
)
@describe.attributes(
    nI=Dimension("Input size"),
    nF=Dimension("Number of features"),
    nO=Dimension("Output size"),
    nP=Dimension("Maxout pieces"),
    W=Synapses("Weights matrix", lambda obj: (obj.nF, obj.nO, obj.nP, obj.nI)),
    b=Biases("Bias vector", lambda obj: (obj.nO, obj.nP)),
    pad=Synapses(
        "Pad",
        lambda obj: (1, obj.nF, obj.nO, obj.nP),
        lambda M, ops: ops.normal_init(M, 1.0),
    ),
    d_W=Gradient("W"),
    d_pad=Gradient("pad"),
    d_b=Gradient("b"),
)
class PrecomputableAffine(Model):
    def __init__(self, nO=None, nI=None, nF=None, nP=None, **kwargs):
        Model.__init__(self, **kwargs)
        self.nO = nO
        self.nP = nP
        self.nI = nI
        self.nF = nF

    def begin_update(self, X, drop=0.0):
        Yf = self.ops.gemm(
            X, self.W.reshape((self.nF * self.nO * self.nP, self.nI)), trans2=True
        )
        Yf = Yf.reshape((Yf.shape[0], self.nF, self.nO, self.nP))
        Yf = self._add_padding(Yf)

        def backward(dY_ids, sgd=None):
            dY, ids = dY_ids
            dY, ids = self._backprop_padding(dY, ids)
            Xf = X[ids]
            Xf = Xf.reshape((Xf.shape[0], self.nF * self.nI))

            self.d_b += dY.sum(axis=0)
            dY = dY.reshape((dY.shape[0], self.nO * self.nP))

            Wopfi = self.W.transpose((1, 2, 0, 3))
            Wopfi = self.ops.xp.ascontiguousarray(Wopfi)
            Wopfi = Wopfi.reshape((self.nO * self.nP, self.nF * self.nI))
            dXf = self.ops.gemm(dY.reshape((dY.shape[0], self.nO * self.nP)), Wopfi)

            # Reuse the buffer
            dWopfi = Wopfi
            dWopfi.fill(0.0)
            self.ops.gemm(dY, Xf, out=dWopfi, trans1=True)
            dWopfi = dWopfi.reshape((self.nO, self.nP, self.nF, self.nI))
            # (o, p, f, i) --> (f, o, p, i)
            self.d_W += dWopfi.transpose((2, 0, 1, 3))

            if sgd is not None:
                sgd(self._mem.weights, self._mem.gradient, key=self.id)
            return dXf.reshape((dXf.shape[0], self.nF, self.nI))

        return Yf, backward

    def _add_padding(self, Yf):
        Yf_padded = self.ops.xp.vstack((self.pad, Yf))
        return Yf_padded

    def _backprop_padding(self, dY, ids):
        # (1, nF, nO, nP) += (nN, nF, nO, nP) where IDs (nN, nF) < 0
        mask = ids < 0.0
        mask = mask.sum(axis=1)
        d_pad = dY * mask.reshape((ids.shape[0], 1, 1))
        self.d_pad += d_pad.sum(axis=0)
        return dY, ids

    @staticmethod
    def init_weights(model):
        """This is like the 'layer sequential unit variance', but instead
        of taking the actual inputs, we randomly generate whitened data.

        Why's this all so complicated? We have a huge number of inputs,
        and the maxout unit makes guessing the dynamics tricky. Instead
        we set the maxout weights to values that empirically result in
        whitened outputs given whitened inputs.
        """
        if (model.W ** 2).sum() != 0.0:
            return
        ops = model.ops
        xp = ops.xp
        ops.normal_init(model.W, model.nF * model.nI, inplace=True)

        ids = ops.allocate((5000, model.nF), dtype="f")
        ids += xp.random.uniform(0, 1000, ids.shape)
        ids = ops.asarray(ids, dtype="i")
        tokvecs = ops.allocate((5000, model.nI), dtype="f")
        tokvecs += xp.random.normal(loc=0.0, scale=1.0, size=tokvecs.size).reshape(
            tokvecs.shape
        )

        def predict(ids, tokvecs):
            # nS ids. nW tokvecs. Exclude the padding array.
            hiddens = model(tokvecs[:-1])  # (nW, f, o, p)
            vectors = model.ops.allocate((ids.shape[0], model.nO * model.nP), dtype="f")
            # need nS vectors
            hiddens = hiddens.reshape(
                (hiddens.shape[0] * model.nF, model.nO * model.nP)
            )
            model.ops.scatter_add(vectors, ids.flatten(), hiddens)
            vectors = vectors.reshape((vectors.shape[0], model.nO, model.nP))
            vectors += model.b
            vectors = model.ops.asarray(vectors)
            if model.nP >= 2:
                return model.ops.maxout(vectors)[0]
            else:
                return vectors * (vectors >= 0)

        tol_var = 0.01
        tol_mean = 0.01
        t_max = 10
        t_i = 0
        for t_i in range(t_max):
            acts1 = predict(ids, tokvecs)
            var = model.ops.xp.var(acts1)
            mean = model.ops.xp.mean(acts1)
            if abs(var - 1.0) >= tol_var:
                model.W /= model.ops.xp.sqrt(var)
            elif abs(mean) >= tol_mean:
                model.b -= mean
            else:
                break


def link_vectors_to_models(vocab):
    vectors = vocab.vectors
    if vectors.name is None:
        vectors.name = VECTORS_KEY
        if vectors.data.size != 0:
            user_warning(Warnings.W020.format(shape=vectors.data.shape))
    ops = Model.ops
    for word in vocab:
        if word.orth in vectors.key2row:
            word.rank = vectors.key2row[word.orth]
        else:
            word.rank = 0
    data = ops.asarray(vectors.data)
    # Set an entry here, so that vectors are accessed by StaticVectors
    # (unideal, I know)
    key = (ops.device, vectors.name)
    if key in thinc.extra.load_nlp.VECTORS:
        if thinc.extra.load_nlp.VECTORS[key].shape != data.shape:
            # This is a hack to avoid the problem in #3853. Maybe we should
            # print a warning as well?
            old_name = vectors.name
            new_name = vectors.name + "_%d" % data.shape[0]
            user_warning(Warnings.W019.format(old=old_name, new=new_name))
            vectors.name = new_name
            key = (ops.device, vectors.name)
    thinc.extra.load_nlp.VECTORS[key] = data


def PyTorchBiLSTM(nO, nI, depth, dropout=0.2):
    import torch.nn
    from thinc.api import with_square_sequences
    from thinc.extra.wrappers import PyTorchWrapperRNN

    if depth == 0:
        return layerize(noop())
    model = torch.nn.LSTM(nI, nO // 2, depth, bidirectional=True, dropout=dropout)
    return with_square_sequences(PyTorchWrapperRNN(model))


def Tok2Vec(width, embed_size, **kwargs):
    pretrained_vectors = kwargs.get("pretrained_vectors", None)
    cnn_maxout_pieces = kwargs.get("cnn_maxout_pieces", 3)
    subword_features = kwargs.get("subword_features", True)
    char_embed = kwargs.get("char_embed", False)
    conv_depth = kwargs.get("conv_depth", 4)
    bilstm_depth = kwargs.get("bilstm_depth", 0)

    cols = ["ID", "NORM", "PREFIX", "SUFFIX", "SHAPE", "ORTH"]

    doc2feats_cfg = {"arch": "spacy.Doc2Feats.v1", "config": {"columns": cols}}
    if char_embed:
        embed_cfg = {
            "arch": "spacy.CharacterEmbed.v1",
            "config": {
                "width": 64,
                "chars": 6,
                "@mix": {
                    "arch": "spacy.LayerNormalizedMaxout.v1",
                    "config": {"width": width, "pieces": 3},
                },
                "@embed_features": None,
            },
        }
    else:
        embed_cfg = {
            "arch": "spacy.MultiHashEmbed.v1",
            "config": {
                "width": width,
                "rows": embed_size,
                "columns": cols,
                "use_subwords": subword_features,
                "@pretrained_vectors": None,
                "@mix": {
                    "arch": "spacy.LayerNormalizedMaxout.v1",
                    "config": {"width": width, "pieces": 3},
                },
            },
        }
        if pretrained_vectors:
            embed_cfg["config"]["@pretrained_vectors"] = {
                "arch": "spacy.PretrainedVectors.v1",
                "config": {
                    "vectors_name": pretrained_vectors,
                    "width": width,
                    "column": cols.index(ID),
                },
            }
    cnn_cfg = {
        "arch": "spacy.MaxoutWindowEncoder.v1",
        "config": {
            "width": width,
            "window_size": 1,
            "pieces": cnn_maxout_pieces,
            "depth": conv_depth,
        },
    }

    bilstm_cfg = {
        "arch": "spacy.TorchBiLSTMEncoder.v1",
        "config": {"width": width, "depth": bilstm_depth},
    }
    if conv_depth == 0 and bilstm_depth == 0:
        encode_cfg = {}
    elif conv_depth >= 1 and bilstm_depth >= 1:
        encode_cfg = {
            "arch": "thinc.FeedForward.v1",
            "config": {"children": [cnn_cfg, bilstm_cfg]},
        }
    elif conv_depth >= 1:
        encode_cfg = cnn_cfg
    else:
        encode_cfg = bilstm_cfg
    config = {"@doc2feats": doc2feats_cfg, "@embed": embed_cfg, "@encode": encode_cfg}
    return new_ml.Tok2Vec(config)


def reapply(layer, n_times):
    def reapply_fwd(X, drop=0.0):
        backprops = []
        for i in range(n_times):
            Y, backprop = layer.begin_update(X, drop=drop)
            X = Y
            backprops.append(backprop)

        def reapply_bwd(dY, sgd=None):
            dX = None
            for backprop in reversed(backprops):
                dY = backprop(dY, sgd=sgd)
                if dX is None:
                    dX = dY
                else:
                    dX += dY
            return dX

        return Y, reapply_bwd

    return wrap(reapply_fwd, layer)


def asarray(ops, dtype):
    def forward(X, drop=0.0):
        return ops.asarray(X, dtype=dtype), None

    return layerize(forward)


def _divide_array(X, size):
    parts = []
    index = 0
    while index < len(X):
        parts.append(X[index : index + size])
        index += size
    return parts


def get_col(idx):
    if idx < 0:
        raise IndexError(Errors.E066.format(value=idx))

    def forward(X, drop=0.0):
        if isinstance(X, numpy.ndarray):
            ops = NumpyOps()
        else:
            ops = CupyOps()
        output = ops.xp.ascontiguousarray(X[:, idx], dtype=X.dtype)

        def backward(y, sgd=None):
            dX = ops.allocate(X.shape)
            dX[:, idx] += y
            return dX

        return output, backward

    return layerize(forward)


def doc2feats(cols=None):
    if cols is None:
        cols = [ID, NORM, PREFIX, SUFFIX, SHAPE, ORTH]

    def forward(docs, drop=0.0):
        feats = []
        for doc in docs:
            feats.append(doc.to_array(cols))
        return feats, None

    model = layerize(forward)
    model.cols = cols
    return model


def print_shape(prefix):
    def forward(X, drop=0.0):
        return X, lambda dX, **kwargs: dX

    return layerize(forward)


@layerize
def get_token_vectors(tokens_attrs_vectors, drop=0.0):
    tokens, attrs, vectors = tokens_attrs_vectors

    def backward(d_output, sgd=None):
        return (tokens, d_output)

    return vectors, backward


@layerize
def logistic(X, drop=0.0):
    xp = get_array_module(X)
    if not isinstance(X, xp.ndarray):
        X = xp.asarray(X)
    # Clip to range (-10, 10)
    X = xp.minimum(X, 10.0, X)
    X = xp.maximum(X, -10.0, X)
    Y = 1.0 / (1.0 + xp.exp(-X))

    def logistic_bwd(dY, sgd=None):
        dX = dY * (Y * (1 - Y))
        return dX

    return Y, logistic_bwd


def zero_init(model):
    def _zero_init_impl(self, X, y):
        self.W.fill(0)

    model.on_data_hooks.append(_zero_init_impl)
    return model


def getitem(i):
    def getitem_fwd(X, drop=0.0):
        return X[i], None

    return layerize(getitem_fwd)


@describe.attributes(
    W=Synapses("Weights matrix", lambda obj: (obj.nO, obj.nI), lambda W, ops: None)
)
class MultiSoftmax(Affine):
    """Neural network layer that predicts several multi-class attributes at once.
    For instance, we might predict one class with 6 variables, and another with 5.
    We predict the 11 neurons required for this, and then softmax them such
    that columns 0-6 make a probability distribution and coumns 6-11 make another.
    """

    name = "multisoftmax"

    def __init__(self, out_sizes, nI=None, **kwargs):
        Model.__init__(self, **kwargs)
        self.out_sizes = out_sizes
        self.nO = sum(out_sizes)
        self.nI = nI

    def predict(self, input__BI):
        output__BO = self.ops.affine(self.W, self.b, input__BI)
        i = 0
        for out_size in self.out_sizes:
            self.ops.softmax(output__BO[:, i : i + out_size], inplace=True)
            i += out_size
        return output__BO

    def begin_update(self, input__BI, drop=0.0):
        output__BO = self.predict(input__BI)

        def finish_update(grad__BO, sgd=None):
            self.d_W += self.ops.gemm(grad__BO, input__BI, trans1=True)
            self.d_b += grad__BO.sum(axis=0)
            grad__BI = self.ops.gemm(grad__BO, self.W)
            if sgd is not None:
                sgd(self._mem.weights, self._mem.gradient, key=self.id)
            return grad__BI

        return output__BO, finish_update


def build_tagger_model(nr_class, **cfg):
    embed_size = util.env_opt("embed_size", 2000)
    if "token_vector_width" in cfg:
        token_vector_width = cfg["token_vector_width"]
    else:
        token_vector_width = util.env_opt("token_vector_width", 96)
    pretrained_vectors = cfg.get("pretrained_vectors")
    subword_features = cfg.get("subword_features", True)
    with Model.define_operators({">>": chain, "+": add}):
        if "tok2vec" in cfg:
            tok2vec = cfg["tok2vec"]
        else:
            tok2vec = Tok2Vec(
                token_vector_width,
                embed_size,
                subword_features=subword_features,
                pretrained_vectors=pretrained_vectors,
            )
        softmax = with_flatten(Softmax(nr_class, token_vector_width))
        model = tok2vec >> softmax
    model.nI = None
    model.tok2vec = tok2vec
    model.softmax = softmax
    return model


def build_morphologizer_model(class_nums, **cfg):
    embed_size = util.env_opt("embed_size", 7000)
    if "token_vector_width" in cfg:
        token_vector_width = cfg["token_vector_width"]
    else:
        token_vector_width = util.env_opt("token_vector_width", 128)
    pretrained_vectors = cfg.get("pretrained_vectors")
    char_embed = cfg.get("char_embed", True)
    with Model.define_operators({">>": chain, "+": add, "**": clone}):
        if "tok2vec" in cfg:
            tok2vec = cfg["tok2vec"]
        else:
            tok2vec = Tok2Vec(
                token_vector_width,
                embed_size,
                char_embed=char_embed,
                pretrained_vectors=pretrained_vectors,
            )
        softmax = with_flatten(MultiSoftmax(class_nums, token_vector_width))
        softmax.out_sizes = class_nums
        model = tok2vec >> softmax
    model.nI = None
    model.tok2vec = tok2vec
    model.softmax = softmax
    return model


@layerize
def SpacyVectors(docs, drop=0.0):
    batch = []
    for doc in docs:
        indices = numpy.zeros((len(doc),), dtype="i")
        for i, word in enumerate(doc):
            if word.orth in doc.vocab.vectors.key2row:
                indices[i] = doc.vocab.vectors.key2row[word.orth]
            else:
                indices[i] = 0
        vectors = doc.vocab.vectors.data[indices]
        batch.append(vectors)
    return batch, None


def build_text_classifier(nr_class, width=64, **cfg):
    depth = cfg.get("depth", 2)
    nr_vector = cfg.get("nr_vector", 5000)
    pretrained_dims = cfg.get("pretrained_dims", 0)
    with Model.define_operators({">>": chain, "+": add, "|": concatenate, "**": clone}):
        if cfg.get("low_data") and pretrained_dims:
            model = (
                SpacyVectors
                >> flatten_add_lengths
                >> with_getitem(0, Affine(width, pretrained_dims))
                >> ParametricAttention(width)
                >> Pooling(sum_pool)
                >> Residual(ReLu(width, width)) ** 2
                >> zero_init(Affine(nr_class, width, drop_factor=0.0))
                >> logistic
            )
            return model

        lower = HashEmbed(width, nr_vector, column=1)
        prefix = HashEmbed(width // 2, nr_vector, column=2)
        suffix = HashEmbed(width // 2, nr_vector, column=3)
        shape = HashEmbed(width // 2, nr_vector, column=4)

        trained_vectors = FeatureExtracter(
            [ORTH, LOWER, PREFIX, SUFFIX, SHAPE, ID]
        ) >> with_flatten(
            uniqued(
                (lower | prefix | suffix | shape)
                >> LN(Maxout(width, width + (width // 2) * 3)),
                column=0,
            )
        )

        if pretrained_dims:
            static_vectors = SpacyVectors >> with_flatten(
                Affine(width, pretrained_dims)
            )
            # TODO Make concatenate support lists
            vectors = concatenate_lists(trained_vectors, static_vectors)
            vectors_width = width * 2
        else:
            vectors = trained_vectors
            vectors_width = width
            static_vectors = None
        tok2vec = vectors >> with_flatten(
            LN(Maxout(width, vectors_width))
            >> Residual((ExtractWindow(nW=1) >> LN(Maxout(width, width * 3)))) ** depth,
            pad=depth,
        )
        cnn_model = (
            tok2vec
            >> flatten_add_lengths
            >> ParametricAttention(width)
            >> Pooling(sum_pool)
            >> Residual(zero_init(Maxout(width, width)))
            >> zero_init(Affine(nr_class, width, drop_factor=0.0))
        )

        linear_model = build_bow_text_classifier(
            nr_class, ngram_size=cfg.get("ngram_size", 1), exclusive_classes=False
        )
        if cfg.get("exclusive_classes"):
            output_layer = Softmax(nr_class, nr_class * 2)
        else:
            output_layer = (
                zero_init(Affine(nr_class, nr_class * 2, drop_factor=0.0)) >> logistic
            )
        model = (linear_model | cnn_model) >> output_layer
        model.tok2vec = chain(tok2vec, flatten)
    model.nO = nr_class
    model.lsuv = False
    return model


def build_bow_text_classifier(
    nr_class, ngram_size=1, exclusive_classes=False, no_output_layer=False, **cfg
):
    with Model.define_operators({">>": chain}):
        model = with_cpu(
            Model.ops, extract_ngrams(ngram_size, attr=ORTH) >> LinearModel(nr_class)
        )
        if not no_output_layer:
            model = model >> (cpu_softmax if exclusive_classes else logistic)
    model.nO = nr_class
    return model


@layerize
def cpu_softmax(X, drop=0.0):
    ops = NumpyOps()

    def cpu_softmax_backward(dY, sgd=None):
        return dY

    return ops.softmax(X), cpu_softmax_backward


def build_simple_cnn_text_classifier(tok2vec, nr_class, exclusive_classes=False, **cfg):
    """
    Build a simple CNN text classifier, given a token-to-vector model as inputs.
    If exclusive_classes=True, a softmax non-linearity is applied, so that the
    outputs sum to 1. If exclusive_classes=False, a logistic non-linearity
    is applied instead, so that outputs are in the range [0, 1].
    """
    with Model.define_operators({">>": chain}):
        if exclusive_classes:
            output_layer = Softmax(nr_class, tok2vec.nO)
        else:
            output_layer = (
                zero_init(Affine(nr_class, tok2vec.nO, drop_factor=0.0)) >> logistic
            )
        model = tok2vec >> flatten_add_lengths >> Pooling(mean_pool) >> output_layer
    model.tok2vec = chain(tok2vec, flatten)
    model.nO = nr_class
    return model


def build_nel_encoder(embed_width, hidden_width, ner_types, **cfg):
    if "entity_width" not in cfg:
        raise ValueError(Errors.E144.format(param="entity_width"))

    conv_depth = cfg.get("conv_depth", 2)
    cnn_maxout_pieces = cfg.get("cnn_maxout_pieces", 3)
    pretrained_vectors = cfg.get("pretrained_vectors", None)
    context_width = cfg.get("entity_width")

    with Model.define_operators({">>": chain, "**": clone}):
        # context encoder
        tok2vec = Tok2Vec(
            width=hidden_width,
            embed_size=embed_width,
            pretrained_vectors=pretrained_vectors,
            cnn_maxout_pieces=cnn_maxout_pieces,
            subword_features=True,
            conv_depth=conv_depth,
            bilstm_depth=0,
        )

        model = (
            tok2vec
            >> flatten_add_lengths
            >> Pooling(mean_pool)
            >> Residual(zero_init(Maxout(hidden_width, hidden_width)))
            >> zero_init(Affine(context_width, hidden_width, drop_factor=0.0))
        )

        model.tok2vec = tok2vec
        model.nO = context_width
    return model


@layerize
def flatten(seqs, drop=0.0):
    ops = Model.ops
    lengths = ops.asarray([len(seq) for seq in seqs], dtype="i")

    def finish_update(d_X, sgd=None):
        return ops.unflatten(d_X, lengths, pad=0)

    X = ops.flatten(seqs, pad=0)
    return X, finish_update


def concatenate_lists(*layers, **kwargs):  # pragma: no cover
    """Compose two or more models `f`, `g`, etc, such that their outputs are
    concatenated, i.e. `concatenate(f, g)(x)` computes `hstack(f(x), g(x))`
    """
    if not layers:
        return noop()
    drop_factor = kwargs.get("drop_factor", 1.0)
    ops = layers[0].ops
    layers = [chain(layer, flatten) for layer in layers]
    concat = concatenate(*layers)

    def concatenate_lists_fwd(Xs, drop=0.0):
        if drop is not None:
            drop *= drop_factor
        lengths = ops.asarray([len(X) for X in Xs], dtype="i")
        flat_y, bp_flat_y = concat.begin_update(Xs, drop=drop)
        ys = ops.unflatten(flat_y, lengths)

        def concatenate_lists_bwd(d_ys, sgd=None):
            return bp_flat_y(ops.flatten(d_ys), sgd=sgd)

        return ys, concatenate_lists_bwd

    model = wrap(concatenate_lists_fwd, concat)
    return model


def masked_language_model(vocab, model, mask_prob=0.15):
    """Convert a model into a BERT-style masked language model"""

    random_words = _RandomWords(vocab)

    def mlm_forward(docs, drop=0.0):
        mask, docs = _apply_mask(docs, random_words, mask_prob=mask_prob)
        mask = model.ops.asarray(mask).reshape((mask.shape[0], 1))
        output, backprop = model.begin_update(docs, drop=drop)

        def mlm_backward(d_output, sgd=None):
            d_output *= 1 - mask
            return backprop(d_output, sgd=sgd)

        return output, mlm_backward

    return wrap(mlm_forward, model)


class _RandomWords(object):
    def __init__(self, vocab):
        self.words = [lex.text for lex in vocab if lex.prob != 0.0]
        self.probs = [lex.prob for lex in vocab if lex.prob != 0.0]
        self.words = self.words[:10000]
        self.probs = self.probs[:10000]
        self.probs = numpy.exp(numpy.array(self.probs, dtype="f"))
        self.probs /= self.probs.sum()
        self._cache = []

    def next(self):
        if not self._cache:
            self._cache.extend(
                numpy.random.choice(len(self.words), 10000, p=self.probs)
            )
        index = self._cache.pop()
        return self.words[index]


def _apply_mask(docs, random_words, mask_prob=0.15):
    # This needs to be here to avoid circular imports
    from .tokens.doc import Doc

    N = sum(len(doc) for doc in docs)
    mask = numpy.random.uniform(0.0, 1.0, (N,))
    mask = mask >= mask_prob
    i = 0
    masked_docs = []
    for doc in docs:
        words = []
        for token in doc:
            if not mask[i]:
                word = _replace_word(token.text, random_words)
            else:
                word = token.text
            words.append(word)
            i += 1
        spaces = [bool(w.whitespace_) for w in doc]
        # NB: If you change this implementation to instead modify
        # the docs in place, take care that the IDs reflect the original
        # words. Currently we use the original docs to make the vectors
        # for the target, so we don't lose the original tokens. But if
        # you modified the docs in place here, you would.
        masked_docs.append(Doc(doc.vocab, words=words, spaces=spaces))
    return mask, masked_docs


def _replace_word(word, random_words, mask="[MASK]"):
    roll = numpy.random.random()
    if roll < 0.8:
        return mask
    elif roll < 0.9:
        return random_words.next()
    else:
        return word


def _uniform_init(lo, hi):
    def wrapped(W, ops):
        copy_array(W, ops.xp.random.uniform(lo, hi, W.shape))

    return wrapped


@describe.attributes(
    nM=Dimension("Vector dimensions"),
    nC=Dimension("Number of characters per word"),
    vectors=Synapses(
        "Embed matrix", lambda obj: (obj.nC, obj.nV, obj.nM), _uniform_init(-0.1, 0.1)
    ),
    d_vectors=Gradient("vectors"),
)
class CharacterEmbed(Model):
    def __init__(self, nM=None, nC=None, **kwargs):
        Model.__init__(self, **kwargs)
        self.nM = nM
        self.nC = nC

    @property
    def nO(self):
        return self.nM * self.nC

    @property
    def nV(self):
        return 256

    def begin_update(self, docs, drop=0.0):
        if not docs:
            return []
        ids = []
        output = []
        weights = self.vectors
        # This assists in indexing; it's like looping over this dimension.
        # Still consider this weird witch craft...But thanks to Mark Neumann
        # for the tip.
        nCv = self.ops.xp.arange(self.nC)
        for doc in docs:
            doc_ids = doc.to_utf8_array(nr_char=self.nC)
            doc_vectors = self.ops.allocate((len(doc), self.nC, self.nM))
            # Let's say I have a 2d array of indices, and a 3d table of data. What numpy
            # incantation do I chant to get
            # output[i, j, k] == data[j, ids[i, j], k]?
            doc_vectors[:, nCv] = weights[nCv, doc_ids[:, nCv]]
            output.append(doc_vectors.reshape((len(doc), self.nO)))
            ids.append(doc_ids)

        def backprop_character_embed(d_vectors, sgd=None):
            gradient = self.d_vectors
            for doc_ids, d_doc_vectors in zip(ids, d_vectors):
                d_doc_vectors = d_doc_vectors.reshape((len(doc_ids), self.nC, self.nM))
                gradient[nCv, doc_ids[:, nCv]] += d_doc_vectors[:, nCv]
            if sgd is not None:
                sgd(self._mem.weights, self._mem.gradient, key=self.id)
            return None

        return output, backprop_character_embed


def get_cossim_loss(yh, y, ignore_zeros=False):
    xp = get_array_module(yh)
    # Find the zero vectors
    if ignore_zeros:
        zero_indices = xp.abs(y).sum(axis=1) == 0
    # Add a small constant to avoid 0 vectors
    yh = yh + 1e-8
    y = y + 1e-8
    # https://math.stackexchange.com/questions/1923613/partial-derivative-of-cosine-similarity
    norm_yh = xp.linalg.norm(yh, axis=1, keepdims=True)
    norm_y = xp.linalg.norm(y, axis=1, keepdims=True)
    mul_norms = norm_yh * norm_y
    cosine = (yh * y).sum(axis=1, keepdims=True) / mul_norms
    d_yh = (y / mul_norms) - (cosine * (yh / norm_yh ** 2))
    losses = xp.abs(cosine - 1)
    if ignore_zeros:
        # If the target was a zero vector, don't count it in the loss.
        d_yh[zero_indices] = 0
        losses[zero_indices] = 0
    loss = losses.sum()
    return loss, -d_yh