lightning/pytorch_lightning/trainer/logging.py

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from abc import ABC
from typing import Iterable, Optional
import torch
from pytorch_lightning.core import memory
from pytorch_lightning.loggers import TensorBoardLogger, LightningLoggerBase, LoggerCollection
from pytorch_lightning.utilities.memory import recursive_detach
class TrainerLoggingMixin(ABC):
# this is just a summary on variables used in this abstract class,
# the proper values/initialisation should be done in child class
current_epoch: int
on_gpu: bool
log_gpu_memory: ...
logger: Optional[LightningLoggerBase]
Progress bar callback (#1450) * squash and rebase sanity check hooks sanity check callback hook finish moved core progress bar functionality into callback wip remove duplicate merge clean up imports docs sanity check progress bar main sanity move callback calls init progrss bar callback configuration and docs changelog rate decorator pass process_position disable on rank > 0 position index is_enabled remove decorator refactor init tqdm bars callback method ordering cannot reset when disabled sequence -> list default values fix has no attr _time() move on_val_end to proper place fix the pickle issue update warning properties check for None remove old comment switch order pull out non-tqdm functionality into base class documentation for the base class docs fix refresh rate issue in validation restrict type hint of trainer arg more docs update trainer docs rst docs fix lines too long fix test add missing type hints fix typo move docstring to __init__ solves doctest failures remove doctest :(( can't fix the pickle error fix example simplify by saving trainer reference fix docs errors move docstring initial value multiple val checks per epoch simpler handling of inf dataset sizes update inf docs renamed training_tqdm_dict rename get_tqdm_dict rename occurences of tqdm update changelog fix doctest fix formatting errors added callback tests progress bar on off test more tests for progress bar weird test fix? add ignored property disable default progress bar in LR finder change enable/disable behavior trying doctest in CI again undo doctest pickle error undo doctest pickle error :(( remove progress_bar_callback Trainer arg and fix tests restore progress bar after auto lr find update docs fix rebase fix wrong negation * fix fast dev run total * more thorough testing * remove old args * fix merge * fix merge * separate tests * type hint total batches * reduce if Co-Authored-By: Jirka Borovec <Borda@users.noreply.github.com> * is_disabled Co-Authored-By: Jirka Borovec <Borda@users.noreply.github.com> * is_enabled Co-Authored-By: Jirka Borovec <Borda@users.noreply.github.com> * rename enabled/disabled * move deprecated api * remove duplicated test from merge * fix rename is_disabled * newline * test also testprogress for fast dev run Co-authored-by: J. Borovec <jirka.borovec@seznam.cz> Co-authored-by: Jirka Borovec <Borda@users.noreply.github.com>
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progress_bar_metrics: ...
global_step: int
proc_rank: int
use_dp: bool
use_ddp2: bool
default_root_dir: str
slurm_job_id: int
num_gpus: int
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def configure_logger(self, logger):
if logger is True:
# default logger
self.logger = TensorBoardLogger(
save_dir=self.default_root_dir,
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version=self.slurm_job_id,
name='lightning_logs'
)
elif logger is False:
self.logger = None
else:
if isinstance(logger, Iterable):
self.logger = LoggerCollection(logger)
else:
self.logger = logger
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def log_metrics(self, metrics, grad_norm_dic, step=None):
"""Logs the metric dict passed in.
If `step` parameter is None and `step` key is presented is metrics,
uses metrics["step"] as a step
Args:
metrics (dict): Metric values
grad_norm_dic (dict): Gradient norms
step (int): Step for which metrics should be logged. Default value corresponds to `self.global_step`
"""
# add gpu memory
if self.on_gpu and self.log_gpu_memory:
mem_map = memory.get_memory_profile(self.log_gpu_memory)
metrics.update(mem_map)
# add norms
metrics.update(grad_norm_dic)
# turn all tensors to scalars
scalar_metrics = self.metrics_to_scalars(metrics)
if "step" in scalar_metrics and step is None:
step = scalar_metrics.pop("step")
else:
# added metrics by Lightning for convenience
scalar_metrics['epoch'] = self.current_epoch
step = step if step is not None else self.global_step
# log actual metrics
if self.proc_rank == 0 and self.logger is not None:
Added accumulation of loggers' metrics for the same steps (#1278) * `add_argparse_args` method fixed (argument types added) * autopep8 fixes * --gpus=0 removed from test (for ci tests) * Update pytorch_lightning/trainer/trainer.py Co-Authored-By: Joe Davison <joe@huggingface.co> * test_with_accumulate_grad_batches added * agg_and_log_metrics logic added to the base logger class * small format fix * agg metrics strategies removed (not to complicate stuff) * agg metrics: handle zero step * autopep8 * changelog upd * flake fix * metrics aggregators factored out, metrics_agg.py added + tests * metrics agg default value added * Update pytorch_lightning/loggers/metrics_agg.py Co-Authored-By: Jirka Borovec <Borda@users.noreply.github.com> * metrics aggregators factored out, metrics_agg.py added + tests * metrics agg default value added * Update pytorch_lightning/loggers/metrics_agg.py Co-Authored-By: Jirka Borovec <Borda@users.noreply.github.com> * remove .item which causes sync issues (#1254) * remove .item which causes sync issues * fixed gradient acc sched * fixed gradient acc sched * test_metrics_agg.py removed (all tested in doctrings), agg metrics refactored * test_metrics_agg.py removed (all tested in doctrings), agg metrics refactored * autopep8 * loggers base.py types fixed * test * test * metrics aggregation for loggers: each key now has a specific function (or default one) * metrics aggregation for loggers: each key now has a specific function (or default one) * docstrings upd * manual typehints removed from docstrings * batch_size decreased for test `test_with_accumulate_grad_batches` * extend running accum * refactor * fix tests * fix tests * allowed_types generator scoped * trainer.py distutils was imported twice, fixed * TensorRunningAccum refactored * TensorRunningAccum added to change log (Changed) * change log pull link added Co-authored-by: Joe Davison <joe@huggingface.co> Co-authored-by: Jirka Borovec <Borda@users.noreply.github.com> Co-authored-by: William Falcon <waf2107@columbia.edu> Co-authored-by: J. Borovec <jirka.borovec@seznam.cz>
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self.logger.agg_and_log_metrics(scalar_metrics, step=step)
self.logger.save()
Progress bar callback (#1450) * squash and rebase sanity check hooks sanity check callback hook finish moved core progress bar functionality into callback wip remove duplicate merge clean up imports docs sanity check progress bar main sanity move callback calls init progrss bar callback configuration and docs changelog rate decorator pass process_position disable on rank > 0 position index is_enabled remove decorator refactor init tqdm bars callback method ordering cannot reset when disabled sequence -> list default values fix has no attr _time() move on_val_end to proper place fix the pickle issue update warning properties check for None remove old comment switch order pull out non-tqdm functionality into base class documentation for the base class docs fix refresh rate issue in validation restrict type hint of trainer arg more docs update trainer docs rst docs fix lines too long fix test add missing type hints fix typo move docstring to __init__ solves doctest failures remove doctest :(( can't fix the pickle error fix example simplify by saving trainer reference fix docs errors move docstring initial value multiple val checks per epoch simpler handling of inf dataset sizes update inf docs renamed training_tqdm_dict rename get_tqdm_dict rename occurences of tqdm update changelog fix doctest fix formatting errors added callback tests progress bar on off test more tests for progress bar weird test fix? add ignored property disable default progress bar in LR finder change enable/disable behavior trying doctest in CI again undo doctest pickle error undo doctest pickle error :(( remove progress_bar_callback Trainer arg and fix tests restore progress bar after auto lr find update docs fix rebase fix wrong negation * fix fast dev run total * more thorough testing * remove old args * fix merge * fix merge * separate tests * type hint total batches * reduce if Co-Authored-By: Jirka Borovec <Borda@users.noreply.github.com> * is_disabled Co-Authored-By: Jirka Borovec <Borda@users.noreply.github.com> * is_enabled Co-Authored-By: Jirka Borovec <Borda@users.noreply.github.com> * rename enabled/disabled * move deprecated api * remove duplicated test from merge * fix rename is_disabled * newline * test also testprogress for fast dev run Co-authored-by: J. Borovec <jirka.borovec@seznam.cz> Co-authored-by: Jirka Borovec <Borda@users.noreply.github.com>
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def add_progress_bar_metrics(self, metrics):
for k, v in metrics.items():
Resolve some codefactor issues (#756) * remove unnecessary pass statements * use isinstance for type checks * remove unnecessary else/elif after return * remove unnecessary return statements * move doc string to top * merge isinstance calls * remove unnecessary else/elif after raise * use list comprehension * do not use len without comparison * add missing shebang * revert isinstance check back to type broke tests, because bool is actually subclass of int * add missing period to doc string * remove unnecessary pass statements * use isinstance for type checks * remove unnecessary else/elif after return * remove unnecessary return statements * move doc string to top * merge isinstance calls * remove unnecessary else/elif after raise * use list comprehension * do not use len without comparison * add missing shebang * revert isinstance check back to type broke tests, because bool is actually subclass of int * add missing period to doc string * Fix default ckpt path when logger exists (#771) * rename logging -> loggers (#767) * move logging >> loggers * add warning * fix tests * logging alias * formatting * formatting * use isinstance for type checks * revert isinstance check back to type broke tests, because bool is actually subclass of int * add more detail to tbptt example (#755) * add more detail to tbptt example * warn user about new arg in training_step Co-authored-by: Vadim Bereznyuk <kuynzereb@gmail.com> Co-authored-by: Jirka Borovec <Borda@users.noreply.github.com> Co-authored-by: Jeremy Jordan <13970565+jeremyjordan@users.noreply.github.com>
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if isinstance(v, torch.Tensor):
v = v.item()
Progress bar callback (#1450) * squash and rebase sanity check hooks sanity check callback hook finish moved core progress bar functionality into callback wip remove duplicate merge clean up imports docs sanity check progress bar main sanity move callback calls init progrss bar callback configuration and docs changelog rate decorator pass process_position disable on rank > 0 position index is_enabled remove decorator refactor init tqdm bars callback method ordering cannot reset when disabled sequence -> list default values fix has no attr _time() move on_val_end to proper place fix the pickle issue update warning properties check for None remove old comment switch order pull out non-tqdm functionality into base class documentation for the base class docs fix refresh rate issue in validation restrict type hint of trainer arg more docs update trainer docs rst docs fix lines too long fix test add missing type hints fix typo move docstring to __init__ solves doctest failures remove doctest :(( can't fix the pickle error fix example simplify by saving trainer reference fix docs errors move docstring initial value multiple val checks per epoch simpler handling of inf dataset sizes update inf docs renamed training_tqdm_dict rename get_tqdm_dict rename occurences of tqdm update changelog fix doctest fix formatting errors added callback tests progress bar on off test more tests for progress bar weird test fix? add ignored property disable default progress bar in LR finder change enable/disable behavior trying doctest in CI again undo doctest pickle error undo doctest pickle error :(( remove progress_bar_callback Trainer arg and fix tests restore progress bar after auto lr find update docs fix rebase fix wrong negation * fix fast dev run total * more thorough testing * remove old args * fix merge * fix merge * separate tests * type hint total batches * reduce if Co-Authored-By: Jirka Borovec <Borda@users.noreply.github.com> * is_disabled Co-Authored-By: Jirka Borovec <Borda@users.noreply.github.com> * is_enabled Co-Authored-By: Jirka Borovec <Borda@users.noreply.github.com> * rename enabled/disabled * move deprecated api * remove duplicated test from merge * fix rename is_disabled * newline * test also testprogress for fast dev run Co-authored-by: J. Borovec <jirka.borovec@seznam.cz> Co-authored-by: Jirka Borovec <Borda@users.noreply.github.com>
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self.progress_bar_metrics[k] = v
def metrics_to_scalars(self, metrics):
new_metrics = {}
for k, v in metrics.items():
if isinstance(v, torch.Tensor):
v = v.item()
Resolve some codefactor issues (#756) * remove unnecessary pass statements * use isinstance for type checks * remove unnecessary else/elif after return * remove unnecessary return statements * move doc string to top * merge isinstance calls * remove unnecessary else/elif after raise * use list comprehension * do not use len without comparison * add missing shebang * revert isinstance check back to type broke tests, because bool is actually subclass of int * add missing period to doc string * remove unnecessary pass statements * use isinstance for type checks * remove unnecessary else/elif after return * remove unnecessary return statements * move doc string to top * merge isinstance calls * remove unnecessary else/elif after raise * use list comprehension * do not use len without comparison * add missing shebang * revert isinstance check back to type broke tests, because bool is actually subclass of int * add missing period to doc string * Fix default ckpt path when logger exists (#771) * rename logging -> loggers (#767) * move logging >> loggers * add warning * fix tests * logging alias * formatting * formatting * use isinstance for type checks * revert isinstance check back to type broke tests, because bool is actually subclass of int * add more detail to tbptt example (#755) * add more detail to tbptt example * warn user about new arg in training_step Co-authored-by: Vadim Bereznyuk <kuynzereb@gmail.com> Co-authored-by: Jirka Borovec <Borda@users.noreply.github.com> Co-authored-by: Jeremy Jordan <13970565+jeremyjordan@users.noreply.github.com>
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if isinstance(v, dict):
v = self.metrics_to_scalars(v)
new_metrics[k] = v
return new_metrics
def process_output(self, output, train=False):
"""Reduces output according to the training mode.
Progress bar callback (#1450) * squash and rebase sanity check hooks sanity check callback hook finish moved core progress bar functionality into callback wip remove duplicate merge clean up imports docs sanity check progress bar main sanity move callback calls init progrss bar callback configuration and docs changelog rate decorator pass process_position disable on rank > 0 position index is_enabled remove decorator refactor init tqdm bars callback method ordering cannot reset when disabled sequence -> list default values fix has no attr _time() move on_val_end to proper place fix the pickle issue update warning properties check for None remove old comment switch order pull out non-tqdm functionality into base class documentation for the base class docs fix refresh rate issue in validation restrict type hint of trainer arg more docs update trainer docs rst docs fix lines too long fix test add missing type hints fix typo move docstring to __init__ solves doctest failures remove doctest :(( can't fix the pickle error fix example simplify by saving trainer reference fix docs errors move docstring initial value multiple val checks per epoch simpler handling of inf dataset sizes update inf docs renamed training_tqdm_dict rename get_tqdm_dict rename occurences of tqdm update changelog fix doctest fix formatting errors added callback tests progress bar on off test more tests for progress bar weird test fix? add ignored property disable default progress bar in LR finder change enable/disable behavior trying doctest in CI again undo doctest pickle error undo doctest pickle error :(( remove progress_bar_callback Trainer arg and fix tests restore progress bar after auto lr find update docs fix rebase fix wrong negation * fix fast dev run total * more thorough testing * remove old args * fix merge * fix merge * separate tests * type hint total batches * reduce if Co-Authored-By: Jirka Borovec <Borda@users.noreply.github.com> * is_disabled Co-Authored-By: Jirka Borovec <Borda@users.noreply.github.com> * is_enabled Co-Authored-By: Jirka Borovec <Borda@users.noreply.github.com> * rename enabled/disabled * move deprecated api * remove duplicated test from merge * fix rename is_disabled * newline * test also testprogress for fast dev run Co-authored-by: J. Borovec <jirka.borovec@seznam.cz> Co-authored-by: Jirka Borovec <Borda@users.noreply.github.com>
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Separates loss from logging and progress bar metrics
"""
# ---------------
# EXTRACT CALLBACK KEYS
# ---------------
# all keys not progress_bar or log are candidates for callbacks
callback_metrics = {}
for k, v in output.items():
if k not in ['progress_bar', 'log', 'hiddens']:
callback_metrics[k] = v
if train and (self.use_dp or self.use_ddp2):
num_gpus = self.num_gpus
callback_metrics = self.reduce_distributed_output(callback_metrics, num_gpus)
# ---------------
# EXTRACT PROGRESS BAR KEYS
# ---------------
try:
progress_output = output['progress_bar']
Progress bar callback (#1450) * squash and rebase sanity check hooks sanity check callback hook finish moved core progress bar functionality into callback wip remove duplicate merge clean up imports docs sanity check progress bar main sanity move callback calls init progrss bar callback configuration and docs changelog rate decorator pass process_position disable on rank > 0 position index is_enabled remove decorator refactor init tqdm bars callback method ordering cannot reset when disabled sequence -> list default values fix has no attr _time() move on_val_end to proper place fix the pickle issue update warning properties check for None remove old comment switch order pull out non-tqdm functionality into base class documentation for the base class docs fix refresh rate issue in validation restrict type hint of trainer arg more docs update trainer docs rst docs fix lines too long fix test add missing type hints fix typo move docstring to __init__ solves doctest failures remove doctest :(( can't fix the pickle error fix example simplify by saving trainer reference fix docs errors move docstring initial value multiple val checks per epoch simpler handling of inf dataset sizes update inf docs renamed training_tqdm_dict rename get_tqdm_dict rename occurences of tqdm update changelog fix doctest fix formatting errors added callback tests progress bar on off test more tests for progress bar weird test fix? add ignored property disable default progress bar in LR finder change enable/disable behavior trying doctest in CI again undo doctest pickle error undo doctest pickle error :(( remove progress_bar_callback Trainer arg and fix tests restore progress bar after auto lr find update docs fix rebase fix wrong negation * fix fast dev run total * more thorough testing * remove old args * fix merge * fix merge * separate tests * type hint total batches * reduce if Co-Authored-By: Jirka Borovec <Borda@users.noreply.github.com> * is_disabled Co-Authored-By: Jirka Borovec <Borda@users.noreply.github.com> * is_enabled Co-Authored-By: Jirka Borovec <Borda@users.noreply.github.com> * rename enabled/disabled * move deprecated api * remove duplicated test from merge * fix rename is_disabled * newline * test also testprogress for fast dev run Co-authored-by: J. Borovec <jirka.borovec@seznam.cz> Co-authored-by: Jirka Borovec <Borda@users.noreply.github.com>
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# reduce progress metrics for progress bar when using dp
if train and (self.use_dp or self.use_ddp2):
num_gpus = self.num_gpus
progress_output = self.reduce_distributed_output(progress_output, num_gpus)
progress_bar_metrics = progress_output
except Exception:
progress_bar_metrics = {}
# ---------------
# EXTRACT LOGGING KEYS
# ---------------
# extract metrics to log to experiment
try:
log_output = output['log']
Progress bar callback (#1450) * squash and rebase sanity check hooks sanity check callback hook finish moved core progress bar functionality into callback wip remove duplicate merge clean up imports docs sanity check progress bar main sanity move callback calls init progrss bar callback configuration and docs changelog rate decorator pass process_position disable on rank > 0 position index is_enabled remove decorator refactor init tqdm bars callback method ordering cannot reset when disabled sequence -> list default values fix has no attr _time() move on_val_end to proper place fix the pickle issue update warning properties check for None remove old comment switch order pull out non-tqdm functionality into base class documentation for the base class docs fix refresh rate issue in validation restrict type hint of trainer arg more docs update trainer docs rst docs fix lines too long fix test add missing type hints fix typo move docstring to __init__ solves doctest failures remove doctest :(( can't fix the pickle error fix example simplify by saving trainer reference fix docs errors move docstring initial value multiple val checks per epoch simpler handling of inf dataset sizes update inf docs renamed training_tqdm_dict rename get_tqdm_dict rename occurences of tqdm update changelog fix doctest fix formatting errors added callback tests progress bar on off test more tests for progress bar weird test fix? add ignored property disable default progress bar in LR finder change enable/disable behavior trying doctest in CI again undo doctest pickle error undo doctest pickle error :(( remove progress_bar_callback Trainer arg and fix tests restore progress bar after auto lr find update docs fix rebase fix wrong negation * fix fast dev run total * more thorough testing * remove old args * fix merge * fix merge * separate tests * type hint total batches * reduce if Co-Authored-By: Jirka Borovec <Borda@users.noreply.github.com> * is_disabled Co-Authored-By: Jirka Borovec <Borda@users.noreply.github.com> * is_enabled Co-Authored-By: Jirka Borovec <Borda@users.noreply.github.com> * rename enabled/disabled * move deprecated api * remove duplicated test from merge * fix rename is_disabled * newline * test also testprogress for fast dev run Co-authored-by: J. Borovec <jirka.borovec@seznam.cz> Co-authored-by: Jirka Borovec <Borda@users.noreply.github.com>
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# reduce progress metrics for progress bar when using dp
if train and (self.use_dp or self.use_ddp2):
num_gpus = self.num_gpus
log_output = self.reduce_distributed_output(log_output, num_gpus)
log_metrics = log_output
except Exception:
log_metrics = {}
# ---------------
# EXTRACT LOSS
# ---------------
# if output dict doesn't have the keyword loss
# then assume the output=loss if scalar
loss = None
if train:
try:
loss = output['loss']
except Exception:
Resolve some codefactor issues (#756) * remove unnecessary pass statements * use isinstance for type checks * remove unnecessary else/elif after return * remove unnecessary return statements * move doc string to top * merge isinstance calls * remove unnecessary else/elif after raise * use list comprehension * do not use len without comparison * add missing shebang * revert isinstance check back to type broke tests, because bool is actually subclass of int * add missing period to doc string * remove unnecessary pass statements * use isinstance for type checks * remove unnecessary else/elif after return * remove unnecessary return statements * move doc string to top * merge isinstance calls * remove unnecessary else/elif after raise * use list comprehension * do not use len without comparison * add missing shebang * revert isinstance check back to type broke tests, because bool is actually subclass of int * add missing period to doc string * Fix default ckpt path when logger exists (#771) * rename logging -> loggers (#767) * move logging >> loggers * add warning * fix tests * logging alias * formatting * formatting * use isinstance for type checks * revert isinstance check back to type broke tests, because bool is actually subclass of int * add more detail to tbptt example (#755) * add more detail to tbptt example * warn user about new arg in training_step Co-authored-by: Vadim Bereznyuk <kuynzereb@gmail.com> Co-authored-by: Jirka Borovec <Borda@users.noreply.github.com> Co-authored-by: Jeremy Jordan <13970565+jeremyjordan@users.noreply.github.com>
2020-02-01 23:44:05 +00:00
if isinstance(output, torch.Tensor):
loss = output
else:
raise RuntimeError(
'No `loss` value in the dictionary returned from `model.training_step()`.'
)
# when using dp need to reduce the loss
if self.use_dp or self.use_ddp2:
loss = self.reduce_distributed_output(loss, self.num_gpus)
# ---------------
# EXTRACT HIDDEN
# ---------------
hiddens = output.get('hiddens')
# use every metric passed in as a candidate for callback
callback_metrics.update(progress_bar_metrics)
callback_metrics.update(log_metrics)
# detach all metrics for callbacks to prevent memory leaks
# no .item() because it will slow things down
callback_metrics = recursive_detach(callback_metrics)
return loss, progress_bar_metrics, log_metrics, callback_metrics, hiddens
def reduce_distributed_output(self, output, num_gpus):
if num_gpus <= 1:
return output
# when using DP, we get one output per gpu
# average outputs and return
Resolve some codefactor issues (#756) * remove unnecessary pass statements * use isinstance for type checks * remove unnecessary else/elif after return * remove unnecessary return statements * move doc string to top * merge isinstance calls * remove unnecessary else/elif after raise * use list comprehension * do not use len without comparison * add missing shebang * revert isinstance check back to type broke tests, because bool is actually subclass of int * add missing period to doc string * remove unnecessary pass statements * use isinstance for type checks * remove unnecessary else/elif after return * remove unnecessary return statements * move doc string to top * merge isinstance calls * remove unnecessary else/elif after raise * use list comprehension * do not use len without comparison * add missing shebang * revert isinstance check back to type broke tests, because bool is actually subclass of int * add missing period to doc string * Fix default ckpt path when logger exists (#771) * rename logging -> loggers (#767) * move logging >> loggers * add warning * fix tests * logging alias * formatting * formatting * use isinstance for type checks * revert isinstance check back to type broke tests, because bool is actually subclass of int * add more detail to tbptt example (#755) * add more detail to tbptt example * warn user about new arg in training_step Co-authored-by: Vadim Bereznyuk <kuynzereb@gmail.com> Co-authored-by: Jirka Borovec <Borda@users.noreply.github.com> Co-authored-by: Jeremy Jordan <13970565+jeremyjordan@users.noreply.github.com>
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if isinstance(output, torch.Tensor):
return output.mean()
for k, v in output.items():
# recurse on nested dics
if isinstance(output[k], dict):
output[k] = self.reduce_distributed_output(output[k], num_gpus)
# do nothing when there's a scalar
elif isinstance(output[k], torch.Tensor) and output[k].dim() == 0:
pass
# do not reduce metrics that have batch size > num gpus
elif output[k].size(0) <= num_gpus:
output[k] = torch.mean(output[k])
return output