Tal Einat
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cae324434d
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added C extensions and changed to single-source code
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2014-04-19 01:31:32 +03:00 |
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Tal Einat
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cec57e693f
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added common.count_different_items_with_max(seq1, seq2, max_different)
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2014-04-15 14:29:42 +03:00 |
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Tal Einat
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2a4f028f8d
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added some tests for has_near_matches_*
Conflicts:
tests/test_generic_search.py
tests/test_substitutions_only.py
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2014-04-12 19:07:22 +03:00 |
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Tal Einat
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183b045645
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fixed typo in module name
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2014-04-12 18:20:10 +03:00 |
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Tal Einat
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196c7766ea
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replaced assertEquals to assertEqual to avoid deprecation warnings
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2014-04-12 18:09:00 +03:00 |
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Tal Einat
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a24d3f7739
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nailed down automated testing and deployment, and fixed test_generic_search_cython
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2014-04-12 13:10:52 +03:00 |
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Tal Einat
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dccf4a47c6
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added C implementation of has_near_matches_substitutions_only
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2014-04-12 13:10:34 +03:00 |
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Tal Einat
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2863b57236
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first working Cython version of generic search
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2014-03-28 10:49:21 +03:00 |
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Tal Einat
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8ba0cc8dc3
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got tox to run 2to3 on tests before running them with Python 3.x
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2014-03-28 10:48:17 +03:00 |
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Tal Einat
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aea33df10e
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added support for searching Biopython Seq objects
also added some tests for search_exact
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2014-03-27 15:31:20 +02:00 |
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Tal Einat
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ef4168edcc
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fixed test for Levenshtein search
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2014-03-27 15:30:06 +02:00 |
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Tal Einat
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77e2de7cd0
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fixed cross-version support of test using str.format
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2014-03-27 15:29:26 +02:00 |
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Tal Einat
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777ce2f39c
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added tests for find_near_matches and achieved 100% coverage
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2014-03-20 18:50:33 +02:00 |
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Tal Einat
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08655a4c3f
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added tests for levenshtein._expand() and changed test code to assertEqual(actual, expected) convention
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2014-03-20 14:50:53 +02:00 |
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Tal Einat
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3b84e6e5fb
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bugfix: generic search would raise an exception on certain input values
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2014-03-19 23:50:33 +02:00 |
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Tal Einat
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39000bda80
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bugfix: generic search wasn't finding matches ending with a sub
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2014-03-19 23:46:34 +02:00 |
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Tal Einat
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26f927dbec
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added fuzzy search allowing insertions and substitutions but no deletions
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2014-03-17 17:07:59 +02:00 |
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Tal Einat
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c6930e2712
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added finding near matches with only substitutions
also added a super-generic find_near_matches() utility function
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2014-03-15 19:36:13 +02:00 |
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Tal Einat
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6b91b654f1
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fixed two edge-case bugs in custom search
also removed some commented out code
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2014-03-14 17:13:42 +02:00 |
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Tal Einat
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af89a6681b
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avoid using TestCase.assertItemsEqual()
The reason is that it is not avialable in the stdlib's unittest.
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2014-03-14 13:06:12 +02:00 |
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Tal Einat
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77fe129c50
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bumped version to 0.2.1 and updated HISTORY
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2014-03-14 12:49:47 +02:00 |
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Tal Einat
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a098e33697
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bugfix: fixed bug in common.group_matches()
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2014-03-14 12:38:47 +02:00 |
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Tal Einat
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1c4bed7c0a
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added utility function with tests + some documentation
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2014-03-12 15:46:48 +02:00 |
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Tal Einat
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b79a856b63
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split into several files and renamed some functions
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2014-03-12 12:00:21 +02:00 |
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Tal Einat
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881ff4c0bc
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fixed one test and two bugs in find_near_matches()
all tests passing!
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2013-11-12 10:18:42 +02:00 |
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Tal Einat
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932ac1b519
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handle edge-case at end of sequence (plus test)
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2013-11-09 22:56:13 +02:00 |
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Tal Einat
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a2f10110bc
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improved result filtering and refactored tests
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2013-11-09 21:47:57 +02:00 |
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Tal Einat
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cf5bbd6269
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added new search function find_near_matches_with_ngrams()
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2013-11-07 15:18:13 +02:00 |
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Tal Einat
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d86dfdc091
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added first working version of find_near_matches, with tests
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2013-11-04 10:25:07 +02:00 |
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Tal Einat
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a7b4701efa
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initial commit (project framework)
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2013-11-02 00:34:18 +02:00 |