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yet another benchmark for Kevin Rue's use case

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Tal Einat 2014-04-11 01:28:01 +03:00
parent c58dff8f29
commit 404b01159f
1 changed files with 5 additions and 0 deletions
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benchmarks/__init__.py
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@ -57,6 +57,11 @@ benchmarks = {
sequence = ''.join(random.choice('ATCG' * 5 + 'N') for _i in xrange(90)), sequence = ''.join(random.choice('ATCG' * 5 + 'N') for _i in xrange(90)),
max_dist = 3, max_dist = 3,
), ),
'random_kevin_partial_match': dict(
subsequence = 'AAGTCTAGT' + ''.join(random.choice('ATCG') for _i in xrange(36-9)),
sequence = 'AAGTCTAGT' + ''.join(random.choice('ATCG' * 5 + 'N') for _i in xrange(90-9)),
max_dist = 3,
),
} }