spaCy/spacy/tests/serialize/test_serialize_kb.py

127 lines
4.3 KiB
Python

from typing import Callable
from spacy import util
from spacy.lang.en import English
from spacy.util import ensure_path, registry
from spacy.kb import KnowledgeBase
from ..util import make_tempdir
from numpy import zeros
def test_serialize_kb_disk(en_vocab):
# baseline assertions
kb1 = _get_dummy_kb(en_vocab)
_check_kb(kb1)
# dumping to file & loading back in
with make_tempdir() as d:
dir_path = ensure_path(d)
if not dir_path.exists():
dir_path.mkdir()
file_path = dir_path / "kb"
kb1.to_disk(str(file_path))
kb2 = KnowledgeBase(vocab=en_vocab, entity_vector_length=3)
kb2.from_disk(str(file_path))
# final assertions
_check_kb(kb2)
def _get_dummy_kb(vocab):
kb = KnowledgeBase(vocab, entity_vector_length=3)
kb.add_entity(entity="Q53", freq=33, entity_vector=[0, 5, 3])
kb.add_entity(entity="Q17", freq=2, entity_vector=[7, 1, 0])
kb.add_entity(entity="Q007", freq=7, entity_vector=[0, 0, 7])
kb.add_entity(entity="Q44", freq=342, entity_vector=[4, 4, 4])
kb.add_alias(alias="double07", entities=["Q17", "Q007"], probabilities=[0.1, 0.9])
kb.add_alias(
alias="guy",
entities=["Q53", "Q007", "Q17", "Q44"],
probabilities=[0.3, 0.3, 0.2, 0.1],
)
kb.add_alias(alias="random", entities=["Q007"], probabilities=[1.0])
return kb
def _check_kb(kb):
# check entities
assert kb.get_size_entities() == 4
for entity_string in ["Q53", "Q17", "Q007", "Q44"]:
assert entity_string in kb.get_entity_strings()
for entity_string in ["", "Q0"]:
assert entity_string not in kb.get_entity_strings()
# check aliases
assert kb.get_size_aliases() == 3
for alias_string in ["double07", "guy", "random"]:
assert alias_string in kb.get_alias_strings()
for alias_string in ["nothingness", "", "randomnoise"]:
assert alias_string not in kb.get_alias_strings()
# check candidates & probabilities
candidates = sorted(kb.get_alias_candidates("double07"), key=lambda x: x.entity_)
assert len(candidates) == 2
assert candidates[0].entity_ == "Q007"
assert 6.999 < candidates[0].entity_freq < 7.01
assert candidates[0].entity_vector == [0, 0, 7]
assert candidates[0].alias_ == "double07"
assert 0.899 < candidates[0].prior_prob < 0.901
assert candidates[1].entity_ == "Q17"
assert 1.99 < candidates[1].entity_freq < 2.01
assert candidates[1].entity_vector == [7, 1, 0]
assert candidates[1].alias_ == "double07"
assert 0.099 < candidates[1].prior_prob < 0.101
def test_serialize_subclassed_kb():
"""Check that IO of a custom KB works fine as part of an EL pipe."""
class SubKnowledgeBase(KnowledgeBase):
def __init__(self, vocab, entity_vector_length, custom_field):
super().__init__(vocab, entity_vector_length)
self.custom_field = custom_field
@registry.misc.register("spacy.CustomKB.v1")
def custom_kb(
entity_vector_length: int, custom_field: int
) -> Callable[["Vocab"], KnowledgeBase]:
def custom_kb_factory(vocab):
kb = SubKnowledgeBase(
vocab=vocab,
entity_vector_length=entity_vector_length,
custom_field=custom_field,
)
kb.add_entity("random_entity", 0.0, zeros(entity_vector_length))
return kb
return custom_kb_factory
nlp = English()
config = {
"kb_loader": {
"@misc": "spacy.CustomKB.v1",
"entity_vector_length": 342,
"custom_field": 666,
}
}
entity_linker = nlp.add_pipe("entity_linker", init_config=config)
nlp.initialize()
assert type(entity_linker.kb) == SubKnowledgeBase
assert entity_linker.kb.entity_vector_length == 342
assert entity_linker.kb.custom_field == 666
# Make sure the custom KB is serialized correctly
with make_tempdir() as tmp_dir:
nlp.to_disk(tmp_dir)
nlp2 = util.load_model_from_path(tmp_dir)
entity_linker2 = nlp2.get_pipe("entity_linker")
# After IO, the KB is the standard one
assert type(entity_linker2.kb) == KnowledgeBase
assert entity_linker2.kb.entity_vector_length == 342
assert not hasattr(entity_linker2.kb, "custom_field")