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spaCy/spacy/matcher.pyx

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# cython: infer_types=True
# cython: profile=True
from __future__ import unicode_literals
import re
import srsly
from libcpp.vector cimport vector
from libc.stdint cimport int32_t, uint64_t, uint16_t
from preshed.maps cimport PreshMap
from cymem.cymem cimport Pool
from murmurhash.mrmr cimport hash64
from .typedefs cimport attr_t, hash_t
from .structs cimport TokenC
from .lexeme cimport attr_id_t
from .vocab cimport Vocab
from .tokens.doc cimport Doc
from .tokens.token cimport Token
from .tokens.doc cimport get_token_attr
from .attrs cimport ID, attr_id_t, NULL_ATTR, ORTH
from .errors import Errors, TempErrors, Warnings, deprecation_warning
from .strings import get_string_id
from .attrs import IDS
from .attrs import FLAG61 as U_ENT
from .attrs import FLAG60 as B2_ENT
from .attrs import FLAG59 as B3_ENT
from .attrs import FLAG58 as B4_ENT
from .attrs import FLAG43 as L2_ENT
from .attrs import FLAG42 as L3_ENT
from .attrs import FLAG41 as L4_ENT
from .attrs import FLAG43 as I2_ENT
from .attrs import FLAG42 as I3_ENT
from .attrs import FLAG41 as I4_ENT
DELIMITER = '||'
DELIMITER = '||'
INDEX_HEAD = 1
INDEX_RELOP = 0
cdef enum action_t:
REJECT = 0000
MATCH = 1000
ADVANCE = 0100
RETRY = 0010
RETRY_EXTEND = 0011
RETRY_ADVANCE = 0110
MATCH_EXTEND = 1001
MATCH_REJECT = 2000
cdef enum quantifier_t:
ZERO
ZERO_ONE
ZERO_PLUS
ONE
ONE_PLUS
cdef struct AttrValueC:
attr_id_t attr
attr_t value
cdef struct IndexValueC:
int32_t index
attr_t value
cdef struct TokenPatternC:
AttrValueC* attrs
int32_t* py_predicates
IndexValueC* extra_attrs
int32_t nr_attr
int32_t nr_extra_attr
int32_t nr_py
quantifier_t quantifier
hash_t key
cdef struct PatternStateC:
TokenPatternC* pattern
int32_t start
int32_t length
cdef struct MatchC:
attr_t pattern_id
int32_t start
int32_t length
cdef find_matches(TokenPatternC** patterns, int n, Doc doc, extensions=None,
predicates=tuple()):
'''Find matches in a doc, with a compiled array of patterns. Matches are
returned as a list of (id, start, end) tuples.
To augment the compiled patterns, we optionally also take two Python lists.
The "predicates" list contains functions that take a Python list and return a
boolean value. It's mostly used for regular expressions.
The "extra_getters" list contains functions that take a Python list and return
an attr ID. It's mostly used for extension attributes.
'''
cdef vector[PatternStateC] states
cdef vector[MatchC] matches
cdef PatternStateC state
cdef int i, j, nr_extra_attr
cdef Pool mem = Pool()
predicate_cache = <char*>mem.alloc(doc.length * len(predicates), sizeof(char))
if extensions is not None and len(extensions) >= 1:
nr_extra_attr = max(extensions.values())
extra_attr_values = <attr_t*>mem.alloc(doc.length * nr_extra_attr, sizeof(attr_t))
else:
nr_extra_attr = 0
extra_attr_values = <attr_t*>mem.alloc(doc.length, sizeof(attr_t))
for i, token in enumerate(doc):
for name, index in extensions.items():
value = token._.get(name)
if isinstance(value, basestring):
value = token.vocab.strings[value]
extra_attr_values[i * nr_extra_attr + index] = value
# Main loop
cdef int nr_predicate = len(predicates)
for i in range(doc.length):
for j in range(n):
states.push_back(PatternStateC(patterns[j], i, 0))
transition_states(states, matches, predicate_cache,
doc[i], extra_attr_values, predicates)
predicate_cache += nr_predicate
extra_attr_values += nr_extra_attr
# Handle matches that end in 0-width patterns
finish_states(matches, states)
output = []
seen = set()
for i in range(matches.size()):
match = (
matches[i].pattern_id,
matches[i].start,
matches[i].start+matches[i].length
)
# We need to deduplicate, because we could otherwise arrive at the same
# match through two paths, e.g. .?.? matching 'a'. Are we matching the
# first .?, or the second .? -- it doesn't matter, it's just one match.
if match not in seen:
output.append(match)
seen.add(match)
return output
cdef attr_t get_ent_id(const TokenPatternC* pattern) nogil:
# The code was originally designed to always have pattern[1].attrs.value
# be the ent_id when we get to the end of a pattern. However, Issue #2671
# showed this wasn't the case when we had a reject-and-continue before a
# match. I still don't really understand what's going on here, but this
# workaround does resolve the issue.
while pattern.attrs.attr != ID and pattern.nr_attr > 0:
pattern += 1
return pattern.attrs.value
cdef void transition_states(vector[PatternStateC]& states, vector[MatchC]& matches,
char* cached_py_predicates,
Token token, const attr_t* extra_attrs, py_predicates) except *:
cdef int q = 0
cdef vector[PatternStateC] new_states
cdef int nr_predicate = len(py_predicates)
for i in range(states.size()):
if states[i].pattern.nr_py != 0:
update_predicate_cache(cached_py_predicates,
states[i].pattern, token, py_predicates)
action = get_action(states[i], token.c, extra_attrs,
cached_py_predicates, nr_predicate)
if action == REJECT:
continue
state = states[i]
states[q] = state
while action in (RETRY, RETRY_ADVANCE, RETRY_EXTEND):
if action == RETRY_EXTEND:
# This handles the 'extend'
new_states.push_back(
PatternStateC(pattern=state.pattern, start=state.start,
length=state.length+1))
if action == RETRY_ADVANCE:
# This handles the 'advance'
new_states.push_back(
PatternStateC(pattern=state.pattern+1, start=state.start,
length=state.length+1))
states[q].pattern += 1
if states[q].pattern.nr_py != 0:
update_predicate_cache(cached_py_predicates,
states[q].pattern, token, py_predicates)
action = get_action(states[q], token.c, extra_attrs,
cached_py_predicates, nr_predicate)
if action == REJECT:
pass
elif action == ADVANCE:
states[q].pattern += 1
states[q].length += 1
q += 1
else:
ent_id = get_ent_id(&state.pattern[1])
if action == MATCH:
matches.push_back(
MatchC(pattern_id=ent_id, start=state.start,
length=state.length+1))
elif action == MATCH_REJECT:
matches.push_back(
MatchC(pattern_id=ent_id, start=state.start,
length=state.length))
elif action == MATCH_EXTEND:
matches.push_back(
MatchC(pattern_id=ent_id, start=state.start,
length=state.length))
states[q].length += 1
q += 1
states.resize(q)
for i in range(new_states.size()):
states.push_back(new_states[i])
cdef void update_predicate_cache(char* cache,
const TokenPatternC* pattern, Token token, predicates):
# If the state references any extra predicates, check whether they match.
# These are cached, so that we don't call these potentially expensive
# Python functions more than we need to.
for i in range(pattern.nr_py):
index = pattern.py_predicates[i]
if cache[index] == 0:
predicate = predicates[index]
result = predicate(token)
if result is True:
cache[index] = 1
elif result is False:
cache[index] = -1
elif result is None:
pass
else:
raise ValueError("Unexpected value: %s" % result)
cdef void finish_states(vector[MatchC]& matches, vector[PatternStateC]& states) except *:
'''Handle states that end in zero-width patterns.'''
cdef PatternStateC state
for i in range(states.size()):
state = states[i]
while get_quantifier(state) in (ZERO_PLUS, ZERO_ONE):
is_final = get_is_final(state)
if is_final:
ent_id = get_ent_id(state.pattern)
matches.push_back(
MatchC(pattern_id=ent_id, start=state.start, length=state.length))
break
else:
state.pattern += 1
cdef action_t get_action(PatternStateC state,
const TokenC* token, const attr_t* extra_attrs,
const char* predicate_matches, int nr_predicate) nogil:
'''We need to consider:
a) Does the token match the specification? [Yes, No]
b) What's the quantifier? [1, 0+, ?]
c) Is this the last specification? [final, non-final]
We can transition in the following ways:
a) Do we emit a match?
b) Do we add a state with (next state, next token)?
c) Do we add a state with (next state, same token)?
d) Do we add a state with (same state, next token)?
We'll code the actions as boolean strings, so 0000 means no to all 4,
1000 means match but no states added, etc.
1:
Yes, final:
1000
Yes, non-final:
0100
No, final:
0000
No, non-final
0000
0+:
Yes, final:
1001
Yes, non-final:
0011
No, final:
1000 (note: Don't include last token!)
No, non-final:
0010
?:
Yes, final:
1000
Yes, non-final:
0100
No, final:
1000 (note: Don't include last token!)
No, non-final:
0010
Possible combinations: 1000, 0100, 0000, 1001, 0110, 0011, 0010,
We'll name the bits "match", "advance", "retry", "extend"
REJECT = 0000
MATCH = 1000
ADVANCE = 0100
RETRY = 0010
MATCH_EXTEND = 1001
RETRY_ADVANCE = 0110
RETRY_EXTEND = 0011
MATCH_REJECT = 2000 # Match, but don't include last token
Problem: If a quantifier is matching, we're adding a lot of open partials
'''
cdef char is_match
is_match = get_is_match(state, token, extra_attrs, predicate_matches, nr_predicate)
quantifier = get_quantifier(state)
is_final = get_is_final(state)
if quantifier == ZERO:
is_match = not is_match
quantifier = ONE
if quantifier == ONE:
if is_match and is_final:
# Yes, final: 1000
return MATCH
elif is_match and not is_final:
# Yes, non-final: 0100
return ADVANCE
elif not is_match and is_final:
# No, final: 0000
return REJECT
else:
return REJECT
elif quantifier == ZERO_PLUS:
if is_match and is_final:
# Yes, final: 1001
return MATCH_EXTEND
elif is_match and not is_final:
# Yes, non-final: 0011
return RETRY_EXTEND
elif not is_match and is_final:
# No, final 2000 (note: Don't include last token!)
return MATCH_REJECT
else:
# No, non-final 0010
return RETRY
elif quantifier == ZERO_ONE:
if is_match and is_final:
# Yes, final: 1000
return MATCH
elif is_match and not is_final:
# Yes, non-final: 0110
# We need both branches here, consider a pair like:
# pattern: .?b string: b
# If we 'ADVANCE' on the .?, we miss the match.
return RETRY_ADVANCE
elif not is_match and is_final:
# No, final 2000 (note: Don't include last token!)
return MATCH_REJECT
else:
# No, non-final 0010
return RETRY
cdef char get_is_match(PatternStateC state,
const TokenC* token, const attr_t* extra_attrs,
const char* predicate_matches, int nr_predicate) nogil:
for i in range(nr_predicate):
if predicate_matches[i] == -1:
return 0
spec = state.pattern
for attr in spec.attrs[:spec.nr_attr]:
if get_token_attr(token, attr.attr) != attr.value:
return 0
for i in range(spec.nr_extra_attr):
if spec.extra_attrs[i].value != extra_attrs[spec.extra_attrs[i].index]:
return 0
return True
cdef char get_is_final(PatternStateC state) nogil:
if state.pattern[1].attrs[0].attr == ID and state.pattern[1].nr_attr == 0:
return 1
else:
return 0
cdef char get_quantifier(PatternStateC state) nogil:
return state.pattern.quantifier
DEF PADDING = 5
cdef TokenPatternC* init_pattern(Pool mem, attr_t entity_id, object token_specs) except NULL:
pattern = <TokenPatternC*>mem.alloc(len(token_specs) + 1, sizeof(TokenPatternC))
cdef int i
for i, (quantifier, spec, extensions, predicates) in enumerate(token_specs):
pattern[i].quantifier = quantifier
pattern[i].attrs = <AttrValueC*>mem.alloc(len(spec), sizeof(AttrValueC))
pattern[i].nr_attr = len(spec)
for j, (attr, value) in enumerate(spec):
pattern[i].attrs[j].attr = attr
pattern[i].attrs[j].value = value
pattern[i].extra_attrs = <IndexValueC*>mem.alloc(len(extensions), sizeof(IndexValueC))
for j, (index, value) in enumerate(extensions):
pattern[i].extra_attrs[j].index = index
pattern[i].extra_attrs[j].value = value
pattern[i].nr_extra_attr = len(extensions)
pattern[i].py_predicates = <int32_t*>mem.alloc(len(predicates), sizeof(int32_t))
for j, index in enumerate(predicates):
pattern[i].py_predicates[j] = index
pattern[i].nr_py = len(predicates)
pattern[i].key = hash64(pattern[i].attrs, pattern[i].nr_attr * sizeof(AttrValueC), 0)
i = len(token_specs)
pattern[i].attrs = <AttrValueC*>mem.alloc(2, sizeof(AttrValueC))
pattern[i].attrs[0].attr = ID
pattern[i].attrs[0].value = entity_id
pattern[i].nr_attr = 0
return pattern
cdef attr_t get_pattern_key(const TokenPatternC* pattern) nogil:
while pattern.nr_attr != 0:
pattern += 1
id_attr = pattern[0].attrs[0]
if id_attr.attr != ID:
with gil:
raise ValueError(Errors.E074.format(attr=ID, bad_attr=id_attr.attr))
return id_attr.value
def _preprocess_pattern(token_specs, string_store, extensions_table, extra_predicates):
"""This function interprets the pattern, converting the various bits of
syntactic sugar before we compile it into a struct with init_pattern.
We need to split the pattern up into three parts:
* Normal attribute/value pairs, which are stored on either the token or lexeme,
can be handled directly.
* Extension attributes are handled specially, as we need to prefetch the
values from Python for the doc before we begin matching.
* Extra predicates also call Python functions, so we have to create the
functions and store them. So we store these specially as well.
* Extension attributes that have extra predicates are stored within the
extra_predicates.
"""
tokens = []
seen_predicates = {}
for spec in token_specs:
if not spec:
# Signifier for 'any token'
tokens.append((ONE, [(NULL_ATTR, 0)], [], []))
continue
ops = _get_operators(spec)
attr_values = _get_attr_values(spec, string_store)
extensions = _get_extensions(spec, string_store, extensions_table)
predicates = _get_extra_predicates(spec, extra_predicates, seen_predicates)
for op in ops:
tokens.append((op, list(attr_values), list(extensions), list(predicates)))
return tokens
def _get_attr_values(spec, string_store):
attr_values = []
for attr, value in spec.items():
if isinstance(attr, basestring):
if attr == '_':
continue
elif attr.upper() == 'OP':
continue
if attr.upper() == 'TEXT':
attr = 'ORTH'
attr = IDS.get(attr.upper())
if isinstance(value, basestring):
value = string_store.add(value)
elif isinstance(value, bool):
value = int(value)
elif isinstance(value, dict):
continue
if attr is not None:
attr_values.append((attr, value))
return attr_values
# These predicate helper classes are used to match the REGEX, IN, >= etc
# extensions to the matcher introduced in #3173.
class _RegexPredicate(object):
def __init__(self, i, attr, value, predicate, is_extension=False):
self.i = i
self.attr = attr
self.value = re.compile(value)
self.predicate = predicate
self.is_extension = is_extension
assert self.predicate == 'REGEX'
def __call__(self, Token token):
if self.is_extension:
value = token._.get(self.attr)
else:
value = token.vocab.strings[get_token_attr(token.c, self.attr)]
return bool(self.value.search(value))
class _SetMemberPredicate(object):
def __init__(self, i, attr, value, predicate, is_extension=False):
self.i = i
self.attr = attr
self.value = set(get_string_id(v) for v in value)
self.predicate = predicate
self.is_extension = is_extension
assert self.predicate in ('IN', 'NOT_IN')
def __call__(self, Token token):
if self.is_extension:
value = get_string_id(token._.get(self.attr))
else:
value = get_token_attr(token.c, self.attr)
if self.predicate == 'IN':
return value in self.value
else:
return value not in self.value
class _ComparisonPredicate(object):
def __init__(self, i, attr, value, predicate, is_extension=False):
self.i = i
self.attr = attr
self.value = value
self.predicate = predicate
self.is_extension = is_extension
assert self.predicate in ('==', '!=', '>=', '<=', '>', '<')
def __call__(self, Token token):
if self.is_extension:
value = token._.get(self.attr)
else:
value = get_token_attr(token.c, self.attr)
if self.predicate == '==':
return value == self.value
if self.predicate == '!=':
return value != self.value
elif self.predicate == '>=':
return value >= self.value
elif self.predicate == '<=':
return value <= self.value
elif self.predicate == '>':
return value > self.value
elif self.predicate == '<':
return value < self.value
def _get_extra_predicates(spec, extra_predicates, seen_predicates):
predicate_types = {
'REGEX': _RegexPredicate,
'IN': _SetMemberPredicate,
'NOT_IN': _SetMemberPredicate,
'==': _ComparisonPredicate,
'>=': _ComparisonPredicate,
'<=': _ComparisonPredicate,
'>': _ComparisonPredicate,
'<': _ComparisonPredicate,
}
output = []
for attr, value in spec.items():
if isinstance(attr, basestring):
if attr == '_':
output.extend(
_get_extension_extra_predicates(
value, extra_predicates, predicate_types,
seen_predicates))
continue
elif attr.upper() == 'OP':
continue
if attr.upper() == 'TEXT':
attr = 'ORTH'
attr = IDS.get(attr.upper())
if isinstance(value, dict):
for type_, cls in predicate_types.items():
if type_ in value:
key = (attr, type_, srsly.json_dumps(value[type_], sort_keys=True))
# Don't create a redundant predicates.
# This helps with efficiency, as we're caching the results.
if key in seen_predicates:
output.append(seen_predicates[key])
else:
predicate = cls(len(extra_predicates), attr, value[type_], type_)
extra_predicates.append(predicate)
output.append(predicate.i)
seen_predicates[key] = predicate.i
return output
def _get_extension_extra_predicates(spec, extra_predicates, predicate_types,
seen_predicates):
output = []
for attr, value in spec.items():
if isinstance(value, dict):
for type_, cls in predicate_types.items():
if type_ in value:
key = (attr, type_, srsly.json_dumps(value[type_], sort_keys=True))
if key in seen_predicates:
output.append(seen_predicates[key])
else:
predicate = cls(len(extra_predicates), attr, value[type_], type_,
is_extension=True)
extra_predicates.append(predicate)
output.append(predicate.i)
seen_predicates[key] = predicate.i
return output
def _get_operators(spec):
# Support 'syntactic sugar' operator '+', as combination of ONE, ZERO_PLUS
lookup = {'*': (ZERO_PLUS,), '+': (ONE, ZERO_PLUS),
'?': (ZERO_ONE,), '1': (ONE,), '!': (ZERO,)}
# Fix casing
spec = {key.upper(): values for key, values in spec.items()
if isinstance(key, basestring)}
if 'OP' not in spec:
return (ONE,)
elif spec['OP'] in lookup:
return lookup[spec['OP']]
else:
keys = ', '.join(lookup.keys())
raise KeyError(Errors.E011.format(op=spec['OP'], opts=keys))
def _get_extensions(spec, string_store, name2index):
attr_values = []
for name, value in spec.get('_', {}).items():
if isinstance(value, dict):
# Handle predicates (e.g. "IN", in the extra_predicates, not here.
continue
if isinstance(value, basestring):
value = string_store.add(value)
if name not in name2index:
name2index[name] = len(name2index)
attr_values.append((name2index[name], value))
return attr_values
cdef class Matcher:
"""Match sequences of tokens, based on pattern rules."""
cdef Pool mem
cdef vector[TokenPatternC*] patterns
cdef readonly Vocab vocab
cdef public object _patterns
cdef public object _entities
cdef public object _callbacks
cdef public object _extensions
cdef public object _extra_predicates
def __init__(self, vocab):
"""Create the Matcher.
vocab (Vocab): The vocabulary object, which must be shared with the
documents the matcher will operate on.
RETURNS (Matcher): The newly constructed object.
"""
self._extra_predicates = []
self._patterns = {}
self._entities = {}
self._callbacks = {}
self._extensions = {}
self._extra_predicates = []
self.vocab = vocab
self.mem = Pool()
def __reduce__(self):
data = (self.vocab, self._patterns, self._callbacks)
return (unpickle_matcher, data, None, None)
def __len__(self):
"""Get the number of rules added to the matcher. Note that this only
returns the number of rules (identical with the number of IDs), not the
number of individual patterns.
RETURNS (int): The number of rules.
"""
return len(self._patterns)
def __contains__(self, key):
"""Check whether the matcher contains rules for a match ID.
key (unicode): The match ID.
RETURNS (bool): Whether the matcher contains rules for this match ID.
"""
return self._normalize_key(key) in self._patterns
def add(self, key, on_match, *patterns):
"""Add a match-rule to the matcher. A match-rule consists of: an ID
key, an on_match callback, and one or more patterns.
If the key exists, the patterns are appended to the previous ones, and
the previous on_match callback is replaced. The `on_match` callback
will receive the arguments `(matcher, doc, i, matches)`. You can also
set `on_match` to `None` to not perform any actions.
A pattern consists of one or more `token_specs`, where a `token_spec`
is a dictionary mapping attribute IDs to values, and optionally a
quantifier operator under the key "op". The available quantifiers are:
'!': Negate the pattern, by requiring it to match exactly 0 times.
'?': Make the pattern optional, by allowing it to match 0 or 1 times.
'+': Require the pattern to match 1 or more times.
'*': Allow the pattern to zero or more times.
The + and * operators are usually interpretted "greedily", i.e. longer
matches are returned where possible. However, if you specify two '+'
and '*' patterns in a row and their matches overlap, the first
operator will behave non-greedily. This quirk in the semantics makes
the matcher more efficient, by avoiding the need for back-tracking.
key (unicode): The match ID.
on_match (callable): Callback executed on match.
*patterns (list): List of token descriptions.
"""
for pattern in patterns:
if len(pattern) == 0:
raise ValueError(Errors.E012.format(key=key))
key = self._normalize_key(key)
for pattern in patterns:
specs = _preprocess_pattern(pattern, self.vocab.strings,
self._extensions, self._extra_predicates)
self.patterns.push_back(init_pattern(self.mem, key, specs))
self._patterns.setdefault(key, [])
self._callbacks[key] = on_match
self._patterns[key].extend(patterns)
def remove(self, key):
"""Remove a rule from the matcher. A KeyError is raised if the key does
not exist.
key (unicode): The ID of the match rule.
"""
key = self._normalize_key(key)
self._patterns.pop(key)
self._callbacks.pop(key)
cdef int i = 0
while i < self.patterns.size():
pattern_key = get_pattern_key(self.patterns.at(i))
if pattern_key == key:
self.patterns.erase(self.patterns.begin()+i)
else:
i += 1
def has_key(self, key):
"""Check whether the matcher has a rule with a given key.
key (string or int): The key to check.
RETURNS (bool): Whether the matcher has the rule.
"""
key = self._normalize_key(key)
return key in self._patterns
def get(self, key, default=None):
"""Retrieve the pattern stored for a key.
key (unicode or int): The key to retrieve.
RETURNS (tuple): The rule, as an (on_match, patterns) tuple.
"""
key = self._normalize_key(key)
if key not in self._patterns:
return default
return (self._callbacks[key], self._patterns[key])
def pipe(self, docs, batch_size=1000, n_threads=2):
"""Match a stream of documents, yielding them in turn.
docs (iterable): A stream of documents.
batch_size (int): Number of documents to accumulate into a working set.
n_threads (int): The number of threads with which to work on the buffer
in parallel, if the implementation supports multi-threading.
YIELDS (Doc): Documents, in order.
"""
for doc in docs:
self(doc)
yield doc
def __call__(self, Doc doc):
"""Find all token sequences matching the supplied pattern.
doc (Doc): The document to match over.
RETURNS (list): A list of `(key, start, end)` tuples,
describing the matches. A match tuple describes a span
`doc[start:end]`. The `label_id` and `key` are both integers.
"""
matches = find_matches(&self.patterns[0], self.patterns.size(), doc,
extensions=self._extensions,
predicates=self._extra_predicates)
for i, (key, start, end) in enumerate(matches):
on_match = self._callbacks.get(key, None)
if on_match is not None:
on_match(self, doc, i, matches)
return matches
def _normalize_key(self, key):
if isinstance(key, basestring):
return self.vocab.strings.add(key)
else:
return key
def unpickle_matcher(vocab, patterns, callbacks):
matcher = Matcher(vocab)
for key, specs in patterns.items():
callback = callbacks.get(key, None)
matcher.add(key, callback, *specs)
return matcher
def _get_longest_matches(matches):
'''Filter out matches that have a longer equivalent.'''
longest_matches = {}
for pattern_id, start, end in matches:
key = (pattern_id, start)
length = end-start
if key not in longest_matches or length > longest_matches[key]:
longest_matches[key] = length
return [(pattern_id, start, start+length)
for (pattern_id, start), length in longest_matches.items()]
def get_bilou(length):
if length == 0:
raise ValueError("Length must be >= 1")
elif length == 1:
return [U_ENT]
elif length == 2:
return [B2_ENT, L2_ENT]
elif length == 3:
return [B3_ENT, I3_ENT, L3_ENT]
else:
return [B4_ENT, I4_ENT] + [I4_ENT] * (length-3) + [L4_ENT]
cdef class PhraseMatcher:
cdef Pool mem
cdef Vocab vocab
cdef Matcher matcher
cdef PreshMap phrase_ids
cdef int max_length
cdef attr_id_t attr
cdef public object _callbacks
cdef public object _patterns
def __init__(self, Vocab vocab, max_length=0, attr='ORTH'):
if max_length != 0:
deprecation_warning(Warnings.W010)
self.mem = Pool()
self.max_length = max_length
self.vocab = vocab
self.matcher = Matcher(self.vocab)
if isinstance(attr, long):
self.attr = attr
else:
self.attr = self.vocab.strings[attr]
self.phrase_ids = PreshMap()
abstract_patterns = [
[{U_ENT: True}],
[{B2_ENT: True}, {L2_ENT: True}],
[{B3_ENT: True}, {I3_ENT: True}, {L3_ENT: True}],
[{B4_ENT: True}, {I4_ENT: True}, {I4_ENT: True, "OP": "+"}, {L4_ENT: True}],
]
self.matcher.add('Candidate', None, *abstract_patterns)
self._callbacks = {}
def __len__(self):
"""Get the number of rules added to the matcher. Note that this only
returns the number of rules (identical with the number of IDs), not the
number of individual patterns.
RETURNS (int): The number of rules.
"""
return len(self.phrase_ids)
def __contains__(self, key):
"""Check whether the matcher contains rules for a match ID.
key (unicode): The match ID.
RETURNS (bool): Whether the matcher contains rules for this match ID.
"""
cdef hash_t ent_id = self.matcher._normalize_key(key)
return ent_id in self._callbacks
def __reduce__(self):
return (self.__class__, (self.vocab,), None, None)
def add(self, key, on_match, *docs):
"""Add a match-rule to the phrase-matcher. A match-rule consists of: an ID
key, an on_match callback, and one or more patterns.
key (unicode): The match ID.
on_match (callable): Callback executed on match.
*docs (Doc): `Doc` objects representing match patterns.
"""
cdef Doc doc
cdef hash_t ent_id = self.matcher._normalize_key(key)
self._callbacks[ent_id] = on_match
cdef int length
cdef int i
cdef hash_t phrase_hash
cdef Pool mem = Pool()
for doc in docs:
length = doc.length
if length == 0:
continue
tags = get_bilou(length)
phrase_key = <attr_t*>mem.alloc(length, sizeof(attr_t))
for i, tag in enumerate(tags):
attr_value = self.get_lex_value(doc, i)
lexeme = self.vocab[attr_value]
lexeme.set_flag(tag, True)
phrase_key[i] = lexeme.orth
phrase_hash = hash64(phrase_key,
length * sizeof(attr_t), 0)
self.phrase_ids.set(phrase_hash, <void*>ent_id)
def __call__(self, Doc doc):
"""Find all sequences matching the supplied patterns on the `Doc`.
doc (Doc): The document to match over.
RETURNS (list): A list of `(key, start, end)` tuples,
describing the matches. A match tuple describes a span
`doc[start:end]`. The `label_id` and `key` are both integers.
"""
matches = []
if self.attr == ORTH:
match_doc = doc
else:
# If we're not matching on the ORTH, match_doc will be a Doc whose
# token.orth values are the attribute values we're matching on,
# e.g. Doc(nlp.vocab, words=[token.pos_ for token in doc])
words = [self.get_lex_value(doc, i) for i in range(len(doc))]
match_doc = Doc(self.vocab, words=words)
for _, start, end in self.matcher(match_doc):
ent_id = self.accept_match(match_doc, start, end)
if ent_id is not None:
matches.append((ent_id, start, end))
for i, (ent_id, start, end) in enumerate(matches):
on_match = self._callbacks.get(ent_id)
if on_match is not None:
on_match(self, doc, i, matches)
return matches
def pipe(self, stream, batch_size=1000, n_threads=1, return_matches=False,
as_tuples=False):
"""Match a stream of documents, yielding them in turn.
docs (iterable): A stream of documents.
batch_size (int): Number of documents to accumulate into a working set.
n_threads (int): The number of threads with which to work on the buffer
in parallel, if the implementation supports multi-threading.
return_matches (bool): Yield the match lists along with the docs, making
results (doc, matches) tuples.
as_tuples (bool): Interpret the input stream as (doc, context) tuples,
and yield (result, context) tuples out.
If both return_matches and as_tuples are True, the output will
be a sequence of ((doc, matches), context) tuples.
YIELDS (Doc): Documents, in order.
"""
if as_tuples:
for doc, context in stream:
matches = self(doc)
if return_matches:
yield ((doc, matches), context)
else:
yield (doc, context)
else:
for doc in stream:
matches = self(doc)
if return_matches:
yield (doc, matches)
else:
yield doc
def accept_match(self, Doc doc, int start, int end):
cdef int i, j
cdef Pool mem = Pool()
phrase_key = <attr_t*>mem.alloc(end-start, sizeof(attr_t))
for i, j in enumerate(range(start, end)):
phrase_key[i] = doc.c[j].lex.orth
cdef hash_t key = hash64(phrase_key,
(end-start) * sizeof(attr_t), 0)
ent_id = <hash_t>self.phrase_ids.get(key)
if ent_id == 0:
return None
else:
return ent_id
def get_lex_value(self, Doc doc, int i):
if self.attr == ORTH:
# Return the regular orth value of the lexeme
return doc.c[i].lex.orth
# Get the attribute value instead, e.g. token.pos
attr_value = get_token_attr(&doc.c[i], self.attr)
if attr_value in (0, 1):
# Value is boolean, convert to string
string_attr_value = str(attr_value)
else:
string_attr_value = self.vocab.strings[attr_value]
string_attr_name = self.vocab.strings[self.attr]
# Concatenate the attr name and value to not pollute lexeme space
# e.g. 'POS-VERB' instead of just 'VERB', which could otherwise
# create false positive matches
return 'matcher:{}-{}'.format(string_attr_name, string_attr_value)
cdef class DependencyTreeMatcher:
"""Match dependency parse tree based on pattern rules."""
cdef Pool mem
cdef readonly Vocab vocab
cdef readonly Matcher token_matcher
cdef public object _patterns
cdef public object _keys_to_token
cdef public object _root
cdef public object _entities
cdef public object _callbacks
cdef public object _nodes
cdef public object _tree
def __init__(self, vocab):
"""Create the DependencyTreeMatcher.
vocab (Vocab): The vocabulary object, which must be shared with the
documents the matcher will operate on.
RETURNS (DependencyTreeMatcher): The newly constructed object.
"""
size = 20
self.token_matcher = Matcher(vocab)
self._keys_to_token = {}
self._patterns = {}
self._root = {}
self._nodes = {}
self._tree = {}
self._entities = {}
self._callbacks = {}
self.vocab = vocab
self.mem = Pool()
def __reduce__(self):
data = (self.vocab, self._patterns,self._tree, self._callbacks)
return (unpickle_matcher, data, None, None)
def __len__(self):
"""Get the number of rules, which are edges ,added to the dependency tree matcher.
RETURNS (int): The number of rules.
"""
return len(self._patterns)
def __contains__(self, key):
"""Check whether the matcher contains rules for a match ID.
key (unicode): The match ID.
RETURNS (bool): Whether the matcher contains rules for this match ID.
"""
return self._normalize_key(key) in self._patterns
def validateInput(self, pattern, key):
idx = 0
visitedNodes = {}
for relation in pattern:
if 'PATTERN' not in relation or 'SPEC' not in relation:
raise ValueError(Errors.E098.format(key=key))
if idx == 0:
if not('NODE_NAME' in relation['SPEC'] and 'NBOR_RELOP' not in relation['SPEC'] and 'NBOR_NAME' not in relation['SPEC']):
raise ValueError(Errors.E099.format(key=key))
visitedNodes[relation['SPEC']['NODE_NAME']] = True
else:
if not('NODE_NAME' in relation['SPEC'] and 'NBOR_RELOP' in relation['SPEC'] and 'NBOR_NAME' in relation['SPEC']):
raise ValueError(Errors.E100.format(key=key))
if relation['SPEC']['NODE_NAME'] in visitedNodes or relation['SPEC']['NBOR_NAME'] not in visitedNodes:
raise ValueError(Errors.E101.format(key=key))
visitedNodes[relation['SPEC']['NODE_NAME']] = True
visitedNodes[relation['SPEC']['NBOR_NAME']] = True
idx = idx + 1
def add(self, key, on_match, *patterns):
for pattern in patterns:
if len(pattern) == 0:
raise ValueError(Errors.E012.format(key=key))
self.validateInput(pattern,key)
key = self._normalize_key(key)
_patterns = []
for pattern in patterns:
token_patterns = []
for i in range(len(pattern)):
token_pattern = [pattern[i]['PATTERN']]
token_patterns.append(token_pattern)
# self.patterns.append(token_patterns)
_patterns.append(token_patterns)
self._patterns.setdefault(key, [])
self._callbacks[key] = on_match
self._patterns[key].extend(_patterns)
# Add each node pattern of all the input patterns individually to the matcher.
# This enables only a single instance of Matcher to be used.
# Multiple adds are required to track each node pattern.
_keys_to_token_list = []
for i in range(len(_patterns)):
_keys_to_token = {}
# TODO : Better ways to hash edges in pattern?
for j in range(len(_patterns[i])):
k = self._normalize_key(unicode(key)+DELIMITER+unicode(i)+DELIMITER+unicode(j))
self.token_matcher.add(k,None,_patterns[i][j])
_keys_to_token[k] = j
_keys_to_token_list.append(_keys_to_token)
self._keys_to_token.setdefault(key, [])
self._keys_to_token[key].extend(_keys_to_token_list)
_nodes_list = []
for pattern in patterns:
nodes = {}
for i in range(len(pattern)):
nodes[pattern[i]['SPEC']['NODE_NAME']]=i
_nodes_list.append(nodes)
self._nodes.setdefault(key, [])
self._nodes[key].extend(_nodes_list)
# Create an object tree to traverse later on.
# This datastructure enable easy tree pattern match.
# Doc-Token based tree cannot be reused since it is memory heavy and
# tightly coupled with doc
self.retrieve_tree(patterns,_nodes_list,key)
def retrieve_tree(self,patterns,_nodes_list,key):
_heads_list = []
_root_list = []
for i in range(len(patterns)):
heads = {}
root = -1
for j in range(len(patterns[i])):
token_pattern = patterns[i][j]
if('NBOR_RELOP' not in token_pattern['SPEC']):
heads[j] = ('root',j)
root = j
else:
heads[j] = (token_pattern['SPEC']['NBOR_RELOP'],_nodes_list[i][token_pattern['SPEC']['NBOR_NAME']])
_heads_list.append(heads)
_root_list.append(root)
_tree_list = []
for i in range(len(patterns)):
tree = {}
for j in range(len(patterns[i])):
if(_heads_list[i][j][INDEX_HEAD] == j):
continue
head = _heads_list[i][j][INDEX_HEAD]
if(head not in tree):
tree[head] = []
tree[head].append( (_heads_list[i][j][INDEX_RELOP],j) )
_tree_list.append(tree)
self._tree.setdefault(key, [])
self._tree[key].extend(_tree_list)
self._root.setdefault(key, [])
self._root[key].extend(_root_list)
def has_key(self, key):
"""Check whether the matcher has a rule with a given key.
key (string or int): The key to check.
RETURNS (bool): Whether the matcher has the rule.
"""
key = self._normalize_key(key)
return key in self._patterns
def get(self, key, default=None):
"""Retrieve the pattern stored for a key.
key (unicode or int): The key to retrieve.
RETURNS (tuple): The rule, as an (on_match, patterns) tuple.
"""
key = self._normalize_key(key)
if key not in self._patterns:
return default
return (self._callbacks[key], self._patterns[key])
def __call__(self, Doc doc):
matched_trees = []
matches = self.token_matcher(doc)
for key in list(self._patterns.keys()):
_patterns_list = self._patterns[key]
_keys_to_token_list = self._keys_to_token[key]
_root_list = self._root[key]
_tree_list = self._tree[key]
_nodes_list = self._nodes[key]
length = len(_patterns_list)
for i in range(length):
_keys_to_token = _keys_to_token_list[i]
_root = _root_list[i]
_tree = _tree_list[i]
_nodes = _nodes_list[i]
id_to_position = {}
for i in range(len(_nodes)):
id_to_position[i]=[]
# This could be taken outside to improve running time..?
for match_id, start, end in matches:
if match_id in _keys_to_token:
id_to_position[_keys_to_token[match_id]].append(start)
_node_operator_map = self.get_node_operator_map(doc,_tree,id_to_position,_nodes,_root)
length = len(_nodes)
if _root in id_to_position:
candidates = id_to_position[_root]
for candidate in candidates:
isVisited = {}
self.dfs(candidate,_root,_tree,id_to_position,doc,isVisited,_node_operator_map)
# To check if the subtree pattern is completely identified. This is a heuristic.
# This is done to reduce the complexity of exponential unordered subtree matching.
# Will give approximate matches in some cases.
if(len(isVisited) == length):
matched_trees.append((key,list(isVisited)))
for i, (ent_id, nodes) in enumerate(matched_trees):
on_match = self._callbacks.get(ent_id)
if on_match is not None:
on_match(self, doc, i, matches)
return matched_trees
def dfs(self,candidate,root,tree,id_to_position,doc,isVisited,_node_operator_map):
if(root in id_to_position and candidate in id_to_position[root]):
# color the node since it is valid
isVisited[candidate] = True
if root in tree:
for root_child in tree[root]:
if candidate in _node_operator_map and root_child[INDEX_RELOP] in _node_operator_map[candidate]:
candidate_children = _node_operator_map[candidate][root_child[INDEX_RELOP]]
for candidate_child in candidate_children:
result = self.dfs(
candidate_child.i,
root_child[INDEX_HEAD],
tree,
id_to_position,
doc,
isVisited,
_node_operator_map
)
# Given a node and an edge operator, to return the list of nodes
# from the doc that belong to node+operator. This is used to store
# all the results beforehand to prevent unnecessary computation while
# pattern matching
# _node_operator_map[node][operator] = [...]
def get_node_operator_map(self,doc,tree,id_to_position,nodes,root):
_node_operator_map = {}
all_node_indices = nodes.values()
all_operators = []
for node in all_node_indices:
if node in tree:
for child in tree[node]:
all_operators.append(child[INDEX_RELOP])
all_operators = list(set(all_operators))
all_nodes = []
for node in all_node_indices:
all_nodes = all_nodes + id_to_position[node]
all_nodes = list(set(all_nodes))
for node in all_nodes:
_node_operator_map[node] = {}
for operator in all_operators:
_node_operator_map[node][operator] = []
# Used to invoke methods for each operator
switcher = {
'<':self.dep,
'>':self.gov,
'>>':self.dep_chain,
'<<':self.gov_chain,
'.':self.imm_precede,
'$+':self.imm_right_sib,
'$-':self.imm_left_sib,
'$++':self.right_sib,
'$--':self.left_sib
}
for operator in all_operators:
for node in all_nodes:
_node_operator_map[node][operator] = switcher.get(operator)(doc,node)
return _node_operator_map
def dep(self,doc,node):
return list(doc[node].head)
def gov(self,doc,node):
return list(doc[node].children)
def dep_chain(self,doc,node):
return list(doc[node].ancestors)
def gov_chain(self,doc,node):
return list(doc[node].subtree)
def imm_precede(self,doc,node):
if node>0:
return [doc[node-1]]
return []
def imm_right_sib(self,doc,node):
for idx in range(list(doc[node].head.children)):
if idx == node-1:
return [doc[idx]]
return []
def imm_left_sib(self,doc,node):
for idx in range(list(doc[node].head.children)):
if idx == node+1:
return [doc[idx]]
return []
def right_sib(self,doc,node):
candidate_children = []
for idx in range(list(doc[node].head.children)):
if idx < node:
candidate_children.append(doc[idx])
return candidate_children
def left_sib(self,doc,node):
candidate_children = []
for idx in range(list(doc[node].head.children)):
if idx > node:
candidate_children.append(doc[idx])
return candidate_children
def _normalize_key(self, key):
if isinstance(key, basestring):
return self.vocab.strings.add(key)
else:
return key
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