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spaCy/spacy/cli/project.py

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from typing import List, Dict, Any, Optional, Sequence, Union
import typer
import srsly
from pathlib import Path
from wasabi import msg
import subprocess
import os
import re
import shutil
import sys
import requests
import tqdm
from ._app import app, Arg, Opt, COMMAND, NAME
from .. import about
from ..schemas import ProjectConfigSchema, validate
from ..util import ensure_path, run_command, make_tempdir, working_dir
from ..util import get_hash, get_checksum, split_command
PROJECT_FILE = "project.yml"
DVC_CONFIG = "dvc.yaml"
DVC_DIR = ".dvc"
DIRS = [
"assets",
"metas",
"configs",
"packages",
"metrics",
"scripts",
"notebooks",
"training",
"corpus",
]
CACHES = [
Path.home() / ".torch",
Path.home() / ".caches" / "torch",
os.environ.get("TORCH_HOME"),
Path.home() / ".keras",
]
DVC_CONFIG_COMMENT = f"""# This file is auto-generated by spaCy based on your {PROJECT_FILE}. Do not edit
# it directly and edit the {PROJECT_FILE} instead and re-run the project."""
CLI_HELP = f"""Command-line interface for spaCy projects and working with project
templates. You'd typically start by cloning a project template to a local
directory and fetching its assets like datasets etc. See the project's
{PROJECT_FILE} for the available commands. Under the hood, spaCy uses DVC (Data
Version Control) to manage input and output files and to ensure steps are only
re-run if their inputs change.
"""
project_cli = typer.Typer(help=CLI_HELP, no_args_is_help=True)
@project_cli.callback(invoke_without_command=True)
def callback(ctx: typer.Context):
"""This runs before every project command and ensures DVC is installed."""
ensure_dvc()
################
# CLI COMMANDS #
################
@project_cli.command("clone")
def project_clone_cli(
# fmt: off
name: str = Arg(..., help="The name of the template to fetch"),
dest: Path = Arg(Path.cwd(), help="Where to download and work. Defaults to current working directory.", exists=False),
repo: str = Opt(about.__projects__, "--repo", "-r", help="The repository to look in."),
git: bool = Opt(False, "--git", "-G", help="Initialize project as a Git repo"),
no_init: bool = Opt(False, "--no-init", "-NI", help="Don't initialize the project with DVC"),
# fmt: on
):
"""Clone a project template from a repository. Calls into "git" and will
only download the files from the given subdirectory. The GitHub repo
defaults to the official spaCy template repo, but can be customized
(including using a private repo). Setting the --git flag will also
initialize the project directory as a Git repo. If the project is intended
to be a Git repo, it should be initialized with Git first, before
initializing DVC (Data Version Control). This allows DVC to integrate with
Git.
"""
if dest == Path.cwd():
dest = dest / name
project_clone(name, dest, repo=repo, git=git, no_init=no_init)
@project_cli.command("init")
def project_init_cli(
# fmt: off
path: Path = Arg(Path.cwd(), help="Path to cloned project. Defaults to current working directory.", exists=True, file_okay=False),
git: bool = Opt(False, "--git", "-G", help="Initialize project as a Git repo"),
force: bool = Opt(False, "--force", "-F", "-f", help="Force initiziation"),
# fmt: on
):
"""Initialize a project directory with DVC and optionally Git. This should
typically be taken care of automatically when you run the "project clone"
command, but you can also run it separately. If the project is intended to
be a Git repo, it should be initialized with Git first, before initializing
DVC. This allows DVC to integrate with Git.
"""
project_init(path, git=git, force=force)
@project_cli.command("assets")
def project_assets_cli(
# fmt: off
project_dir: Path = Arg(Path.cwd(), help="Path to cloned project. Defaults to current working directory.", exists=True, file_okay=False),
# fmt: on
):
"""Use DVC (Data Version Control) to fetch project assets. Assets are
defined in the "assets" section of the project.yml. If possible, DVC
will try to track the files so you can pull changes from upstream. It will
also try and store the checksum so the assets are versioned. If the file
can't be tracked or checked, it will be downloaded without DVC. If a checksum
is provided in the project.yml, the file is only downloaded if no local
file with the same checksum exists.
"""
project_assets(project_dir)
@project_cli.command(
"run-all",
context_settings={"allow_extra_args": True, "ignore_unknown_options": True},
)
def project_run_all_cli(
# fmt: off
ctx: typer.Context,
project_dir: Path = Arg(Path.cwd(), help="Location of project directory. Defaults to current working directory.", exists=True, file_okay=False),
show_help: bool = Opt(False, "--help", help="Show help message and available subcommands")
# fmt: on
):
"""Run all commands defined in the project. This command will use DVC and
the defined outputs and dependencies in the project.yml to determine
which steps need to be re-run and where to start. This means you're only
re-generating data if the inputs have changed.
This command calls into "dvc repro" and all additional arguments are passed
to the "dvc repro" command: https://dvc.org/doc/command-reference/repro
"""
if show_help:
print_run_help(project_dir)
else:
project_run_all(project_dir, *ctx.args)
@project_cli.command(
"run", context_settings={"allow_extra_args": True, "ignore_unknown_options": True},
)
def project_run_cli(
# fmt: off
ctx: typer.Context,
subcommand: str = Arg(None, help=f"Name of command defined in the {PROJECT_FILE}"),
project_dir: Path = Arg(Path.cwd(), help="Location of project directory. Defaults to current working directory.", exists=True, file_okay=False),
show_help: bool = Opt(False, "--help", help="Show help message and available subcommands")
# fmt: on
):
"""Run a named script defined in the project.yml. If the command is
part of the default pipeline defined in the "run" section, DVC is used to
determine whether the step should re-run if its inputs have changed, or
whether everything is up to date. If the script is not part of the default
pipeline, it will be called separately without DVC.
If DVC is used, the command calls into "dvc repro" and all additional
arguments are passed to the "dvc repro" command:
https://dvc.org/doc/command-reference/repro
"""
if show_help or not subcommand:
print_run_help(project_dir, subcommand)
else:
project_run(project_dir, subcommand, *ctx.args)
@project_cli.command("exec", hidden=True)
def project_exec_cli(
# fmt: off
subcommand: str = Arg(..., help=f"Name of command defined in the {PROJECT_FILE}"),
project_dir: Path = Arg(Path.cwd(), help="Location of project directory. Defaults to current working directory.", exists=True, file_okay=False),
# fmt: on
):
"""Execute a command defined in the project.yml. This CLI command is
only called internally in auto-generated DVC pipelines, as a shortcut for
multi-step commands in the project.yml. You typically shouldn't have to
call it yourself. To run a command, call "run" or "run-all".
"""
project_exec(project_dir, subcommand)
@project_cli.command("update-dvc")
def project_update_dvc_cli(
# fmt: off
project_dir: Path = Arg(Path.cwd(), help="Location of project directory. Defaults to current working directory.", exists=True, file_okay=False),
verbose: bool = Opt(False, "--verbose", "-V", help="Print more info"),
force: bool = Opt(False, "--force", "-F", help="Force update DVC config"),
# fmt: on
):
"""Update the auto-generated DVC config file. Uses the steps defined in the
"run" section of the project.yml. This typically happens automatically
when running a command, but can also be triggered manually if needed.
"""
config = load_project_config(project_dir)
updated = update_dvc_config(project_dir, config, verbose=verbose, force=force)
if updated:
msg.good(f"Updated DVC config from {PROJECT_FILE}")
else:
msg.info(f"No changes found in {PROJECT_FILE}, no update needed")
app.add_typer(project_cli, name="project")
#################
# CLI FUNCTIONS #
#################
def project_clone(
name: str,
dest: Path,
*,
repo: str = about.__projects__,
git: bool = False,
no_init: bool = False,
) -> None:
"""Clone a project template from a repository.
name (str): Name of subdirectory to clone.
dest (Path): Destination path of cloned project.
repo (str): URL of Git repo containing project templates.
git (bool): Initialize project as Git repo. Should be set to True if project
is intended as a repo, since it will allow DVC to integrate with Git.
no_init (bool): Don't initialize DVC and Git automatically. If True, the
"init" command or "git init" and "dvc init" need to be run manually.
"""
dest = ensure_path(dest)
check_clone(name, dest, repo)
project_dir = dest.resolve()
# We're using Git and sparse checkout to only clone the files we need
with make_tempdir() as tmp_dir:
cmd = f"git clone {repo} {tmp_dir} --no-checkout --depth 1 --config core.sparseCheckout=true"
try:
run_command(cmd)
except DVCError:
err = f"Could not clone the repo '{repo}' into the temp dir '{tmp_dir}'."
msg.fail(err)
with (tmp_dir / ".git" / "info" / "sparse-checkout").open("w") as f:
f.write(name)
try:
run_command(["git", "-C", str(tmp_dir), "fetch"])
run_command(["git", "-C", str(tmp_dir), "checkout"])
except DVCError:
err = f"Could not clone '{name}' in the repo '{repo}'."
msg.fail(err)
shutil.move(str(tmp_dir / Path(name).name), str(project_dir))
msg.good(f"Cloned project '{name}' from {repo} into {project_dir}")
for sub_dir in DIRS:
dir_path = project_dir / sub_dir
if not dir_path.exists():
dir_path.mkdir(parents=True)
if not no_init:
project_init(project_dir, git=git, force=True, silent=True)
msg.good(f"Your project is now ready!", dest)
print(f"To fetch the assets, run:\n{COMMAND} project assets {dest}")
def project_init(
project_dir: Path,
*,
git: bool = False,
force: bool = False,
silent: bool = False,
analytics: bool = False,
):
"""Initialize a project as a DVC and (optionally) as a Git repo.
project_dir (Path): Path to project directory.
git (bool): Also call "git init" to initialize directory as a Git repo.
silent (bool): Don't print any output (via DVC).
analytics (bool): Opt-in to DVC analytics (defaults to False).
"""
with working_dir(project_dir) as cwd:
if git:
run_command(["git", "init"])
flags = {"--force": force, "--quiet": silent, "--no-scm": not git}
try:
run_dvc_command(["init"], flags=flags)
except DVCError:
msg.fail(
"Failed to initialize project. This likely means that the "
"project is already initialized and has a .dvc directory. "
"To force-initialize, use the --force flag.",
exits=1,
)
# We don't want to have analytics on by default – our users should
# opt-in explicitly. If they want it, they can always enable it.
if not analytics:
run_dvc_command(["config", "core.analytics", "false"])
# Remove unused and confusing plot templates from .dvc directory.
# Otherwise super confusing once you commit your changes via Git and it
# creates a bunch of files that have no purpose.
plots_dir = cwd / DVC_DIR / "plots"
if plots_dir.exists():
shutil.rmtree(str(plots_dir))
config = load_project_config(cwd)
setup_check_dvc(cwd, config)
msg.good("Initialized project")
def project_assets(project_dir: Path) -> None:
"""Fetch assets for a project using DVC if possible.
project_dir (Path): Path to project directory.
"""
project_path = ensure_path(project_dir)
config = load_project_config(project_path)
setup_check_dvc(project_path, config)
assets = config.get("assets", {})
if not assets:
msg.warn(f"No assets specified in {PROJECT_FILE}", exits=0)
msg.info(f"Fetching {len(assets)} asset(s)")
variables = config.get("variables", {})
fetched_assets = []
for asset in assets:
dest = asset["dest"].format(**variables)
url = asset.get("url")
checksum = asset.get("checksum")
if not url:
# project.yml defines asset without URL that the user has to place
if not Path(dest).exists():
err = f"No URL provided for asset. You need to add this file yourself: {dest}"
msg.warn(err)
else:
if checksum == get_checksum(dest):
msg.good(f"Asset exists with matching checksum: {dest}")
fetched_assets.append((project_path / dest).resolve())
else:
msg.fail(f"Asset available but with incorrect checksum: {dest}")
continue
url = url.format(**variables)
fetched_path = fetch_asset(project_path, url, dest, checksum)
if fetched_path:
fetched_assets.append(str(fetched_path))
if fetched_assets:
with working_dir(project_path):
run_dvc_command(["add", *fetched_assets, "--external"])
def fetch_asset(
project_path: Path, url: str, dest: Path, checksum: Optional[str] = None
) -> Optional[Path]:
"""Fetch an asset from a given URL or path. Will try to import the file
using DVC's import-url if possible (fully tracked and versioned) and falls
back to get-url (versioned) and a non-DVC download if necessary. If a
checksum is provided and a local file exists, it's only re-downloaded if the
checksum doesn't match.
project_path (Path): Path to project directory.
url (str): URL or path to asset.
checksum (Optional[str]): Optional expected checksum of local file.
RETURNS (Optional[Path]): The path to the fetched asset or None if fetching
the asset failed.
"""
url = convert_asset_url(url)
dest_path = (project_path / dest).resolve()
if dest_path.exists() and checksum:
# If there's already a file, check for checksum
# TODO: add support for caches (dvc import-url with local path)
if checksum == get_checksum(dest_path):
msg.good(f"Skipping download with matching checksum: {dest}")
return dest_path
with working_dir(project_path):
try:
# If these fail, we don't want to output an error or info message.
# Try with tracking the source first, then just downloading with
# DVC, then a regular non-DVC download.
try:
run_dvc_command(["import-url", url, str(dest_path)])
except DVCError:
run_dvc_command(["get-url", url, str(dest_path)])
except DVCError:
try:
download_file(url, dest_path)
except requests.exceptions.HTTPError as e:
msg.fail(f"Download failed: {dest}", e)
return None
if checksum and checksum != get_checksum(dest_path):
msg.fail(f"Checksum doesn't match value defined in {PROJECT_FILE}: {dest}")
msg.good(f"Fetched asset {dest}")
return dest_path
def project_run_all(project_dir: Path, *dvc_args) -> None:
"""Run all commands defined in the project using DVC.
project_dir (Path): Path to project directory.
*dvc_args: Other arguments passed to "dvc repro".
"""
config = load_project_config(project_dir)
setup_check_dvc(project_dir, config)
with working_dir(project_dir):
try:
run_dvc_command(["repro", *dvc_args])
except DVCError:
# We could raise a custom error here, but the output produced by
# DVC is already pretty substantial.
sys.exit(1)
def print_run_help(project_dir: Path, subcommand: Optional[str] = None) -> None:
"""Simulate a CLI help prompt using the info available in the project.yml.
project_dir (Path): The project directory.
subcommand (Optional[str]): The subcommand or None. If a subcommand is
provided, the subcommand help is shown. Otherwise, the top-level help
and a list of available commands is printed.
"""
config = load_project_config(project_dir)
setup_check_dvc(project_dir, config)
config_commands = config.get("commands", [])
commands = {cmd["name"]: cmd for cmd in config_commands}
if subcommand:
validate_subcommand(commands.keys(), subcommand)
print(f"Usage: {COMMAND} project run {subcommand} {project_dir}")
help_text = commands[subcommand].get("help")
if help_text:
msg.text(f"\n{help_text}\n")
else:
print(f"\nAvailable commands in {PROJECT_FILE}")
print(f"Usage: {COMMAND} project run [COMMAND] {project_dir}")
msg.table([(cmd["name"], cmd.get("help", "")) for cmd in config_commands])
msg.text(f"Run all commands defined in the 'run' block of the {PROJECT_FILE}:")
print(f"{COMMAND} project run-all {project_dir}")
def project_run(project_dir: Path, subcommand: str, *dvc_args) -> None:
"""Run a named script defined in the project.yml. If the script is part
of the default pipeline (defined in the "run" section), DVC is used to
execute the command, so it can determine whether to rerun it. It then
calls into "exec" to execute it.
project_dir (Path): Path to project directory.
subcommand (str): Name of command to run.
*dvc_args: Other arguments passed to "dvc repro".
"""
config = load_project_config(project_dir)
setup_check_dvc(project_dir, config)
config_commands = config.get("commands", [])
variables = config.get("variables", {})
commands = {cmd["name"]: cmd for cmd in config_commands}
validate_subcommand(commands.keys(), subcommand)
if subcommand in config.get("run", []):
# This is one of the pipeline commands tracked in DVC
with working_dir(project_dir):
try:
run_dvc_command(["repro", subcommand, *dvc_args])
except DVCError:
# We could raise a custom error here, but the output produced by
# DVC is already pretty substantial.
sys.exit(1)
else:
cmd = commands[subcommand]
# Deps in non-DVC commands aren't tracked, but if they're defined,
# make sure they exist before running the command
for dep in cmd.get("deps", []):
if not (project_dir / dep).exists():
err = f"Missing dependency specified by command '{subcommand}': {dep}"
msg.fail(err, exits=1)
with working_dir(project_dir):
run_commands(cmd["script"], variables)
def project_exec(project_dir: Path, subcommand: str) -> None:
"""Execute a command defined in the project.yml.
project_dir (Path): Path to project directory.
subcommand (str): Name of command to run.
"""
config = load_project_config(project_dir)
config_commands = config.get("commands", [])
variables = config.get("variables", {})
commands = {cmd["name"]: cmd for cmd in config_commands}
with working_dir(project_dir):
run_commands(commands[subcommand]["script"], variables)
###########
# HELPERS #
###########
def load_project_config(path: Path) -> Dict[str, Any]:
"""Load the project.yml file from a directory and validate it.
path (Path): The path to the project directory.
RETURNS (Dict[str, Any]): The loaded project.yml.
"""
config_path = path / PROJECT_FILE
if not config_path.exists():
msg.fail(f"Can't find {PROJECT_FILE}", config_path, exits=1)
invalid_err = f"Invalid {PROJECT_FILE}. Double-check that the YAML is correct."
try:
config = srsly.read_yaml(config_path)
except ValueError as e:
msg.fail(invalid_err, e, exits=1)
errors = validate(ProjectConfigSchema, config)
if errors:
msg.fail(invalid_err, "\n".join(errors), exits=1)
return config
def update_dvc_config(
path: Path,
config: Dict[str, Any],
verbose: bool = False,
silent: bool = False,
force: bool = False,
) -> bool:
"""Re-run the DVC commands in dry mode and update dvc.yaml file in the
project directory. The file is auto-generated based on the config. The
first line of the auto-generated file specifies the hash of the config
dict, so if any of the config values change, the DVC config is regenerated.
path (Path): The path to the project directory.
config (Dict[str, Any]): The loaded project.yml.
verbose (bool): Whether to print additional info (via DVC).
silent (bool): Don't output anything (via DVC).
force (bool): Force update, even if hashes match.
RETURNS (bool): Whether the DVC config file was updated.
"""
config_hash = get_hash(config)
path = path.resolve()
dvc_config_path = path / DVC_CONFIG
if dvc_config_path.exists():
# Check if the file was generated using the current config, if not, redo
with dvc_config_path.open("r", encoding="utf8") as f:
ref_hash = f.readline().strip().replace("# ", "")
if ref_hash == config_hash and not force:
return False # Nothing has changed in project.yml, don't need to update
dvc_config_path.unlink()
variables = config.get("variables", {})
dvc_commands = []
# We only want to include commands that are part of the main list of "run"
# commands in project.yml and should be run in sequence
config_commands = {cmd["name"]: cmd for cmd in config.get("commands", [])}
for name in config.get("run", []):
validate_subcommand(config_commands.keys(), name)
command = config_commands[name]
deps = command.get("deps", [])
outputs = command.get("outputs", [])
outputs_no_cache = command.get("outputs_no_cache", [])
if not deps and not outputs and not outputs_no_cache:
continue
# Default to the working dir as the project path since dvc.yaml is auto-generated
# and we don't want arbitrary paths in there
project_cmd = ["python", "-m", NAME, "project", "exec", name]
deps_cmd = [c for cl in [["-d", p] for p in deps] for c in cl]
outputs_cmd = [c for cl in [["-o", p] for p in outputs] for c in cl]
outputs_nc_cmd = [c for cl in [["-O", p] for p in outputs_no_cache] for c in cl]
dvc_cmd = ["run", "-n", name, "-w", str(path), "--no-exec"]
full_cmd = [*dvc_cmd, *deps_cmd, *outputs_cmd, *outputs_nc_cmd, *project_cmd]
dvc_commands.append(" ".join(full_cmd))
with working_dir(path):
dvc_flags = {"--verbose": verbose, "--quiet": silent}
run_dvc_commands(dvc_commands, variables, flags=dvc_flags)
with dvc_config_path.open("r+", encoding="utf8") as f:
content = f.read()
f.seek(0, 0)
f.write(f"# {config_hash}\n{DVC_CONFIG_COMMENT}\n{content}")
return True
def ensure_dvc() -> None:
"""Ensure that the "dvc" command is available and show an error if not."""
try:
subprocess.run(["dvc", "--version"], stdout=subprocess.DEVNULL)
except Exception:
msg.fail(
"spaCy projects require DVC (Data Version Control) and the 'dvc' command",
"You can install the Python package from pip (pip install dvc) or "
"conda (conda install -c conda-forge dvc). For more details, see the "
"documentation: https://dvc.org/doc/install",
exits=1,
)
def setup_check_dvc(project_dir: Path, config: Dict[str, Any]) -> None:
"""Check that the project is set up correctly with DVC and update its
config if needed. Will raise an error if the project is not an initialized
DVC project.
project_dir (Path): The path to the project directory.
config (Dict[str, Any]): The loaded project.yml.
"""
if not project_dir.exists():
msg.fail(f"Can't find project directory: {project_dir}")
if not (project_dir / ".dvc").exists():
msg.fail(
"Project not initialized as a DVC project.",
f"Make sure that the project template was cloned correctly. To "
f"initialize the project directory manually, you can run: "
f"{COMMAND} project init {project_dir}",
exits=1,
)
with msg.loading("Updating DVC config..."):
updated = update_dvc_config(project_dir, config, silent=True)
if updated:
msg.good(f"Updated DVC config from changed {PROJECT_FILE}")
def convert_asset_url(url: str) -> str:
"""Check and convert the asset URL if needed.
url (str): The asset URL.
RETURNS (str): The converted URL.
"""
# If the asset URL is a regular GitHub URL it's likely a mistake
if re.match(r"(http(s?)):\/\/github.com", url):
converted = url.replace("github.com", "raw.githubusercontent.com")
converted = re.sub(r"/(tree|blob)/", "/", converted)
msg.warn(
"Downloading from a regular GitHub URL. This will only download "
"the source of the page, not the actual file. Converting the URL "
"to a raw URL.",
converted,
)
return converted
return url
def check_clone(name: str, dest: Path, repo: str) -> None:
"""Check and validate that the destination path can be used to clone. Will
check that Git is available and that the destination path is suitable.
name (str): Name of the directory to clone from the repo.
dest (Path): Local destination of cloned directory.
repo (str): URL of the repo to clone from.
"""
try:
subprocess.run(["git", "--version"], stdout=subprocess.DEVNULL)
except Exception:
msg.fail(
f"Cloning spaCy project templates requires Git and the 'git' command. ",
f"To clone a project without Git, copy the files from the '{name}' "
f"directory in the {repo} to {dest} manually and then run:",
f"{COMMAND} project init {dest}",
exits=1,
)
if not dest:
msg.fail(f"Not a valid directory to clone project: {dest}", exits=1)
if dest.exists():
# Directory already exists (not allowed, clone needs to create it)
msg.fail(f"Can't clone project, directory already exists: {dest}", exits=1)
if not dest.parent.exists():
# We're not creating parents, parent dir should exist
msg.fail(
f"Can't clone project, parent directory doesn't exist: {dest.parent}",
exits=1,
)
def validate_subcommand(commands: Sequence[str], subcommand: str) -> None:
"""Check that a subcommand is valid and defined. Raises an error otherwise.
commands (Sequence[str]): The available commands.
subcommand (str): The subcommand.
"""
if subcommand not in commands:
msg.fail(
f"Can't find command '{subcommand}' in {PROJECT_FILE}. "
f"Available commands: {', '.join(commands)}",
exits=1,
)
def download_file(url: str, dest: Path, chunk_size: int = 1024) -> None:
"""Download a file using requests.
url (str): The URL of the file.
dest (Path): The destination path.
chunk_size (int): The size of chunks to read/write.
"""
response = requests.get(url, stream=True)
response.raise_for_status()
total = int(response.headers.get("content-length", 0))
progress_settings = {
"total": total,
"unit": "iB",
"unit_scale": True,
"unit_divisor": chunk_size,
"leave": False,
}
with dest.open("wb") as f, tqdm.tqdm(**progress_settings) as bar:
for data in response.iter_content(chunk_size=chunk_size):
size = f.write(data)
bar.update(size)
def run_commands(
commands: List[str] = tuple(), variables: Dict[str, str] = {}, silent: bool = False
) -> None:
"""Run a sequence of commands in a subprocess, in order.
commands (List[str]): The string commands.
variables (Dict[str, str]): Dictionary of variable names, mapped to their
values. Will be used to substitute format string variables in the
commands.
silent (bool): Don't print the commands.
"""
for command in commands:
# Substitute variables, e.g. "./{NAME}.json"
command = command.format(**variables)
command = split_command(command)
# Not sure if this is needed or a good idea. Motivation: users may often
# use commands in their config that reference "python" and we want to
# make sure that it's always executing the same Python that spaCy is
# executed with and the pip in the same env, not some other Python/pip.
# Also ensures cross-compatibility if user 1 writes "python3" (because
# that's how it's set up on their system), and user 2 without the
# shortcut tries to re-run the command.
if len(command) and command[0] in ("python", "python3"):
command[0] = sys.executable
elif len(command) and command[0] in ("pip", "pip3"):
command = [sys.executable, "-m", "pip", *command[1:]]
if not silent:
print(f"Running command: {' '.join(command)}")
run_command(command)
def run_dvc_commands(
commands: List[str] = tuple(),
variables: Dict[str, str] = {},
flags: Dict[str, bool] = {},
) -> None:
"""Run a sequence of DVC commands in a subprocess, in order.
commands (List[str]): The string commands without the leading "dvc".
variables (Dict[str, str]): Dictionary of variable names, mapped to their
values. Will be used to substitute format string variables in the
commands.
flags (Dict[str, bool]): Conditional flags to be added to command. Makes it
easier to pass flags like --quiet that depend on a variable or
command-line setting while avoiding lots of nested conditionals.
"""
for command in commands:
# Substitute variables, e.g. "./{NAME}.json"
command = command.format(**variables)
command = split_command(command)
run_dvc_command(command, flags=flags)
def run_dvc_command(
command: Union[str, List[str]], flags: Dict[str, bool] = {}, silent: bool = False
) -> None:
"""Run a DVC command in a subprocess. This wrapper gives us a bit more
control over how the output and errors are presented. Raises a DVC error if
the "dvc" command returns a non-zero exit code and uses the error message
logged by DVC.
command (Union[str, List[str]]): The command, without the leading "dvc".
flags (Dict[str, bool]): Conditional flags to be added to command. Makes it
easier to pass flags like --quiet that depend on a variable or
command-line setting while avoiding lots of nested conditionals.
silent (bool): Don't print any output.
"""
if isinstance(command, str):
command = split_command(command)
dvc_command = ["dvc", *command]
# Add the flags if they are set to True
for flag, is_active in flags.items():
if is_active:
dvc_command.append(flag)
proc = subprocess.Popen(dvc_command, stderr=subprocess.PIPE, stdout=subprocess.PIPE)
if not silent:
lines = proc.stdout.read().decode("utf8").split("\n\n")
for line in lines:
line = line.strip()
if is_relevant_dvc_output(line):
print(f"{line}\n")
_, err = proc.communicate() # Important: otherwise returncode will be None!
if proc.returncode != 0:
if isinstance(err, bytes):
err = err.decode("utf8")
raise DVCError(err)
def is_relevant_dvc_output(line: str) -> bool:
"""Check whether the output by DVC is something we want to keep.
line (str): A line written to stdout,.
RETURNS (bool): Whether to use/print the line.
"""
# Writing them like this for readability but maybe replace with regex?
conditions = [
not line,
line.startswith("What's next?"),
line.startswith("Having any troubles?"),
]
return not any(conditions)
class DVCError(RuntimeError):
"""Custom error type for anything produced by the DVC CLI."""
pass
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