# coding: utf8 from __future__ import unicode_literals, print_function from pathlib import Path from collections import Counter import plac import sys import srsly from wasabi import Printer, MESSAGES from ..gold import GoldCorpus from ..syntax import nonproj from ..util import load_model, get_lang_class # Minimum number of expected occurrences of NER label in data to train new label NEW_LABEL_THRESHOLD = 50 # Minimum number of expected occurrences of dependency labels DEP_LABEL_THRESHOLD = 20 # Minimum number of expected examples to train a blank model BLANK_MODEL_MIN_THRESHOLD = 100 BLANK_MODEL_THRESHOLD = 2000 @plac.annotations( lang=("model language", "positional", None, str), train_path=("location of JSON-formatted training data", "positional", None, Path), dev_path=("location of JSON-formatted development data", "positional", None, Path), base_model=("name of model to update (optional)", "option", "b", str), pipeline=( "Comma-separated names of pipeline components to train", "option", "p", str, ), ignore_warnings=("Ignore warnings, only show stats and errors", "flag", "IW", bool), verbose=("Print additional information and explanations", "flag", "V", bool), no_format=("Don't pretty-print the results", "flag", "NF", bool), ) def debug_data( lang, train_path, dev_path, base_model=None, pipeline="tagger,parser,ner", ignore_warnings=False, verbose=False, no_format=False, ): """ Analyze, debug and validate your training and development data, get useful stats, and find problems like invalid entity annotations, cyclic dependencies, low data labels and more. """ msg = Printer(pretty=not no_format, ignore_warnings=ignore_warnings) # Make sure all files and paths exists if they are needed if not train_path.exists(): msg.fail("Training data not found", train_path, exits=1) if not dev_path.exists(): msg.fail("Development data not found", dev_path, exits=1) # Initialize the model and pipeline pipeline = [p.strip() for p in pipeline.split(",")] if base_model: nlp = load_model(base_model) else: lang_cls = get_lang_class(lang) nlp = lang_cls() msg.divider("Data format validation") # TODO: Validate data format using the JSON schema # TODO: update once the new format is ready # TODO: move validation to GoldCorpus in order to be able to load from dir # Create the gold corpus to be able to better analyze data loading_train_error_message = "" loading_dev_error_message = "" with msg.loading("Loading corpus..."): corpus = GoldCorpus(train_path, dev_path) try: train_docs = list(corpus.train_docs(nlp)) train_docs_unpreprocessed = list( corpus.train_docs_without_preprocessing(nlp) ) except ValueError as e: loading_train_error_message = "Training data cannot be loaded: {}".format( str(e) ) try: dev_docs = list(corpus.dev_docs(nlp)) except ValueError as e: loading_dev_error_message = "Development data cannot be loaded: {}".format( str(e) ) if loading_train_error_message or loading_dev_error_message: if loading_train_error_message: msg.fail(loading_train_error_message) if loading_dev_error_message: msg.fail(loading_dev_error_message) sys.exit(1) msg.good("Corpus is loadable") # Create all gold data here to avoid iterating over the train_docs constantly gold_train_data = _compile_gold(train_docs, pipeline) gold_train_unpreprocessed_data = _compile_gold(train_docs_unpreprocessed, pipeline) gold_dev_data = _compile_gold(dev_docs, pipeline) train_texts = gold_train_data["texts"] dev_texts = gold_dev_data["texts"] msg.divider("Training stats") msg.text("Training pipeline: {}".format(", ".join(pipeline))) for pipe in [p for p in pipeline if p not in nlp.factories]: msg.fail("Pipeline component '{}' not available in factories".format(pipe)) if base_model: msg.text("Starting with base model '{}'".format(base_model)) else: msg.text("Starting with blank model '{}'".format(lang)) msg.text("{} training docs".format(len(train_docs))) msg.text("{} evaluation docs".format(len(dev_docs))) overlap = len(train_texts.intersection(dev_texts)) if overlap: msg.warn("{} training examples also in evaluation data".format(overlap)) else: msg.good("No overlap between training and evaluation data") if not base_model and len(train_docs) < BLANK_MODEL_THRESHOLD: text = "Low number of examples to train from a blank model ({})".format( len(train_docs) ) if len(train_docs) < BLANK_MODEL_MIN_THRESHOLD: msg.fail(text) else: msg.warn(text) msg.text( "It's recommended to use at least {} examples (minimum {})".format( BLANK_MODEL_THRESHOLD, BLANK_MODEL_MIN_THRESHOLD ), show=verbose, ) msg.divider("Vocab & Vectors") n_words = gold_train_data["n_words"] msg.info( "{} total {} in the data ({} unique)".format( n_words, "word" if n_words == 1 else "words", len(gold_train_data["words"]) ) ) if gold_train_data["n_misaligned_words"] > 0: msg.warn( "{} misaligned tokens in the training data".format( gold_train_data["n_misaligned_words"] ) ) if gold_dev_data["n_misaligned_words"] > 0: msg.warn( "{} misaligned tokens in the dev data".format( gold_dev_data["n_misaligned_words"] ) ) most_common_words = gold_train_data["words"].most_common(10) msg.text( "10 most common words: {}".format( _format_labels(most_common_words, counts=True) ), show=verbose, ) if len(nlp.vocab.vectors): msg.info( "{} vectors ({} unique keys, {} dimensions)".format( len(nlp.vocab.vectors), nlp.vocab.vectors.n_keys, nlp.vocab.vectors_length, ) ) else: msg.info("No word vectors present in the model") if "ner" in pipeline: # Get all unique NER labels present in the data labels = set( label for label in gold_train_data["ner"] if label not in ("O", "-") ) label_counts = gold_train_data["ner"] model_labels = _get_labels_from_model(nlp, "ner") new_labels = [l for l in labels if l not in model_labels] existing_labels = [l for l in labels if l in model_labels] has_low_data_warning = False has_no_neg_warning = False has_ws_ents_error = False msg.divider("Named Entity Recognition") msg.info( "{} new {}, {} existing {}".format( len(new_labels), "label" if len(new_labels) == 1 else "labels", len(existing_labels), "label" if len(existing_labels) == 1 else "labels", ) ) missing_values = label_counts["-"] msg.text( "{} missing {} (tokens with '-' label)".format( missing_values, "value" if missing_values == 1 else "values" ) ) if new_labels: labels_with_counts = [ (label, count) for label, count in label_counts.most_common() if label != "-" ] labels_with_counts = _format_labels(labels_with_counts, counts=True) msg.text("New: {}".format(labels_with_counts), show=verbose) if existing_labels: msg.text( "Existing: {}".format(_format_labels(existing_labels)), show=verbose ) if gold_train_data["ws_ents"]: msg.fail( "{} invalid whitespace entity spans".format(gold_train_data["ws_ents"]) ) has_ws_ents_error = True for label in new_labels: if label_counts[label] <= NEW_LABEL_THRESHOLD: msg.warn( "Low number of examples for new label '{}' ({})".format( label, label_counts[label] ) ) has_low_data_warning = True with msg.loading("Analyzing label distribution..."): neg_docs = _get_examples_without_label(train_docs, label) if neg_docs == 0: msg.warn( "No examples for texts WITHOUT new label '{}'".format(label) ) has_no_neg_warning = True if not has_low_data_warning: msg.good("Good amount of examples for all labels") if not has_no_neg_warning: msg.good("Examples without occurrences available for all labels") if not has_ws_ents_error: msg.good("No entities consisting of or starting/ending with whitespace") if has_low_data_warning: msg.text( "To train a new entity type, your data should include at " "least {} instances of the new label".format(NEW_LABEL_THRESHOLD), show=verbose, ) if has_no_neg_warning: msg.text( "Training data should always include examples of entities " "in context, as well as examples without a given entity " "type.", show=verbose, ) if has_ws_ents_error: msg.text( "As of spaCy v2.1.0, entity spans consisting of or starting/ending " "with whitespace characters are considered invalid." ) if "textcat" in pipeline: msg.divider("Text Classification") labels = [label for label in gold_train_data["cats"]] model_labels = _get_labels_from_model(nlp, "textcat") new_labels = [l for l in labels if l not in model_labels] existing_labels = [l for l in labels if l in model_labels] msg.info( "Text Classification: {} new label(s), {} existing label(s)".format( len(new_labels), len(existing_labels) ) ) if new_labels: labels_with_counts = _format_labels( gold_train_data["cats"].most_common(), counts=True ) msg.text("New: {}".format(labels_with_counts), show=verbose) if existing_labels: msg.text( "Existing: {}".format(_format_labels(existing_labels)), show=verbose ) if set(gold_train_data["cats"]) != set(gold_dev_data["cats"]): msg.fail( "The train and dev labels are not the same. " "Train labels: {}. " "Dev labels: {}.".format( _format_labels(gold_train_data["cats"]), _format_labels(gold_dev_data["cats"]), ) ) if gold_train_data["n_cats_multilabel"] > 0: msg.info("The train data contains instances without " "mutually-exclusive classes. Use '--textcat-multilabel' " "when training." ) if gold_dev_data["n_cats_multilabel"] == 0: msg.warn( "Potential train/dev mismatch: the train data contains " "instances without mutually-exclusive classes while the " "dev data does not." ) else: msg.info( "The train data contains only instances with " "mutually-exclusive classes." ) if gold_dev_data["n_cats_multilabel"] > 0: msg.fail( "Train/dev mismatch: the dev data contains instances " "without mutually-exclusive classes while the train data " "contains only instances with mutually-exclusive classes." ) if "tagger" in pipeline: msg.divider("Part-of-speech Tagging") labels = [label for label in gold_train_data["tags"]] tag_map = nlp.Defaults.tag_map msg.info( "{} {} in data ({} {} in tag map)".format( len(labels), "label" if len(labels) == 1 else "labels", len(tag_map), "label" if len(tag_map) == 1 else "labels", ) ) labels_with_counts = _format_labels( gold_train_data["tags"].most_common(), counts=True ) msg.text(labels_with_counts, show=verbose) non_tagmap = [l for l in labels if l not in tag_map] if not non_tagmap: msg.good("All labels present in tag map for language '{}'".format(nlp.lang)) for label in non_tagmap: msg.fail( "Label '{}' not found in tag map for language '{}'".format( label, nlp.lang ) ) if "parser" in pipeline: msg.divider("Dependency Parsing") # profile sentence length msg.info( "Found {} sentence{} with an average length of {:.1f} words.".format( gold_train_data["n_sents"], "s" if len(train_docs) > 1 else "", gold_train_data["n_words"] / gold_train_data["n_sents"], ) ) # profile labels labels_train = [label for label in gold_train_data["deps"]] labels_train_unpreprocessed = [ label for label in gold_train_unpreprocessed_data["deps"] ] labels_dev = [label for label in gold_dev_data["deps"]] if gold_train_unpreprocessed_data["n_nonproj"] > 0: msg.info( "Found {} nonprojective train sentence{}".format( gold_train_unpreprocessed_data["n_nonproj"], "s" if gold_train_unpreprocessed_data["n_nonproj"] > 1 else "", ) ) if gold_dev_data["n_nonproj"] > 0: msg.info( "Found {} nonprojective dev sentence{}".format( gold_dev_data["n_nonproj"], "s" if gold_dev_data["n_nonproj"] > 1 else "", ) ) msg.info( "{} {} in train data".format( len(labels_train_unpreprocessed), "label" if len(labels_train) == 1 else "labels", ) ) msg.info( "{} {} in projectivized train data".format( len(labels_train), "label" if len(labels_train) == 1 else "labels" ) ) labels_with_counts = _format_labels( gold_train_unpreprocessed_data["deps"].most_common(), counts=True ) msg.text(labels_with_counts, show=verbose) # rare labels in train for label in gold_train_unpreprocessed_data["deps"]: if gold_train_unpreprocessed_data["deps"][label] <= DEP_LABEL_THRESHOLD: msg.warn( "Low number of examples for label '{}' ({})".format( label, gold_train_unpreprocessed_data["deps"][label] ) ) has_low_data_warning = True # rare labels in projectivized train rare_projectivized_labels = [] for label in gold_train_data["deps"]: if gold_train_data["deps"][label] <= DEP_LABEL_THRESHOLD and "||" in label: rare_projectivized_labels.append( "{}: {}".format(label, str(gold_train_data["deps"][label])) ) if len(rare_projectivized_labels) > 0: msg.warn( "Low number of examples for {} label{} in the " "projectivized dependency trees used for training. You may " "want to projectivize labels such as punct before " "training in order to improve parser performance.".format( len(rare_projectivized_labels), "s" if len(rare_projectivized_labels) > 1 else "", ) ) msg.warn( "Projectivized labels with low numbers of examples: " "{}".format("\n".join(rare_projectivized_labels)), show=verbose, ) has_low_data_warning = True # labels only in train if set(labels_train) - set(labels_dev): msg.warn( "The following labels were found only in the train data: " "{}".format(", ".join(set(labels_train) - set(labels_dev))), show=verbose, ) # labels only in dev if set(labels_dev) - set(labels_train): msg.warn( "The following labels were found only in the dev data: " + ", ".join(set(labels_dev) - set(labels_train)), show=verbose, ) if has_low_data_warning: msg.text( "To train a parser, your data should include at " "least {} instances of each label.".format(DEP_LABEL_THRESHOLD), show=verbose, ) # multiple root labels if len(gold_train_unpreprocessed_data["roots"]) > 1: msg.warn( "Multiple root labels ({}) ".format( ", ".join(gold_train_unpreprocessed_data["roots"]) ) + "found in training data. spaCy's parser uses a single root " "label ROOT so this distinction will not be available." ) # these should not happen, but just in case if gold_train_data["n_nonproj"] > 0: msg.fail( "Found {} nonprojective projectivized train sentence{}".format( gold_train_data["n_nonproj"], "s" if gold_train_data["n_nonproj"] > 1 else "", ) ) if gold_train_data["n_cycles"] > 0: msg.fail( "Found {} projectivized train sentence{} with cycles".format( gold_train_data["n_cycles"], "s" if gold_train_data["n_cycles"] > 1 else "", ) ) msg.divider("Summary") good_counts = msg.counts[MESSAGES.GOOD] warn_counts = msg.counts[MESSAGES.WARN] fail_counts = msg.counts[MESSAGES.FAIL] if good_counts: msg.good( "{} {} passed".format( good_counts, "check" if good_counts == 1 else "checks" ) ) if warn_counts: msg.warn( "{} {}".format(warn_counts, "warning" if warn_counts == 1 else "warnings") ) if fail_counts: msg.fail("{} {}".format(fail_counts, "error" if fail_counts == 1 else "errors")) if fail_counts: sys.exit(1) def _load_file(file_path, msg): file_name = file_path.parts[-1] if file_path.suffix == ".json": with msg.loading("Loading {}...".format(file_name)): data = srsly.read_json(file_path) msg.good("Loaded {}".format(file_name)) return data elif file_path.suffix == ".jsonl": with msg.loading("Loading {}...".format(file_name)): data = srsly.read_jsonl(file_path) msg.good("Loaded {}".format(file_name)) return data msg.fail( "Can't load file extension {}".format(file_path.suffix), "Expected .json or .jsonl", exits=1, ) def _compile_gold(train_docs, pipeline): data = { "ner": Counter(), "cats": Counter(), "tags": Counter(), "deps": Counter(), "words": Counter(), "roots": Counter(), "ws_ents": 0, "n_words": 0, "n_misaligned_words": 0, "n_sents": 0, "n_nonproj": 0, "n_cycles": 0, "n_cats_multilabel": 0, "texts": set(), } for doc, gold in train_docs: valid_words = [x for x in gold.words if x is not None] data["words"].update(valid_words) data["n_words"] += len(valid_words) data["n_misaligned_words"] += len(gold.words) - len(valid_words) data["texts"].add(doc.text) if "ner" in pipeline: for i, label in enumerate(gold.ner): if label is None: continue if label.startswith(("B-", "U-", "L-")) and doc[i].is_space: # "Illegal" whitespace entity data["ws_ents"] += 1 if label.startswith(("B-", "U-")): combined_label = label.split("-")[1] data["ner"][combined_label] += 1 elif label == "-": data["ner"]["-"] += 1 if "textcat" in pipeline: data["cats"].update(gold.cats) if list(gold.cats.values()).count(1.0) != 1: data["n_cats_multilabel"] += 1 if "tagger" in pipeline: data["tags"].update([x for x in gold.tags if x is not None]) if "parser" in pipeline: data["deps"].update([x for x in gold.labels if x is not None]) for i, (dep, head) in enumerate(zip(gold.labels, gold.heads)): if head == i: data["roots"].update([dep]) data["n_sents"] += 1 if nonproj.is_nonproj_tree(gold.heads): data["n_nonproj"] += 1 if nonproj.contains_cycle(gold.heads): data["n_cycles"] += 1 return data def _format_labels(labels, counts=False): if counts: return ", ".join(["'{}' ({})".format(l, c) for l, c in labels]) return ", ".join(["'{}'".format(l) for l in labels]) def _get_examples_without_label(data, label): count = 0 for doc, gold in data: labels = [label.split("-")[1] for label in gold.ner if label not in ("O", "-")] if label not in labels: count += 1 return count def _get_labels_from_model(nlp, pipe_name): if pipe_name not in nlp.pipe_names: return set() pipe = nlp.get_pipe(pipe_name) return pipe.labels