import re from ...gold import Example from ...gold import iob_to_biluo, spans_from_biluo_tags, biluo_tags_from_offsets from ...language import Language from ...tokens import Doc, Token from .conll_ner2json import n_sents_info from wasabi import Printer def conllu2json( input_data, n_sents=10, append_morphology=False, lang=None, ner_map=None, merge_subtokens=False, no_print=False, **_ ): """ Convert conllu files into JSON format for use with train cli. append_morphology parameter enables appending morphology to tags, which is useful for languages such as Spanish, where UD tags are not so rich. Extract NER tags if available and convert them so that they follow BILUO and the Wikipedia scheme """ MISC_NER_PATTERN = "\|?(?:name=)?(([A-Z_]+)-([A-Z_]+)|O)\|?" msg = Printer(no_print=no_print) n_sents_info(msg, n_sents) docs = [] raw = "" sentences = [] conll_data = read_conllx(input_data, append_morphology=append_morphology, ner_tag_pattern=MISC_NER_PATTERN, ner_map=ner_map, merge_subtokens=merge_subtokens) has_ner_tags = has_ner(input_data, ner_tag_pattern=MISC_NER_PATTERN) for i, example in enumerate(conll_data): raw += example.text sentences.append( generate_sentence( example.token_annotation, has_ner_tags, MISC_NER_PATTERN, ner_map=ner_map, ) ) # Real-sized documents could be extracted using the comments on the # conllu document if len(sentences) % n_sents == 0: doc = create_json_doc(raw, sentences, i) docs.append(doc) raw = "" sentences = [] if sentences: doc = create_json_doc(raw, sentences, i) docs.append(doc) return docs def has_ner(input_data, ner_tag_pattern): """ Check the 10th column of the first token to determine if the file contains NER tags """ for sent in input_data.strip().split("\n\n"): lines = sent.strip().split("\n") if lines: while lines[0].startswith("#"): lines.pop(0) if lines: parts = lines[0].split("\t") id_, word, lemma, pos, tag, morph, head, dep, _1, misc = parts if re.search(ner_tag_pattern, misc): return True else: return False def read_conllx(input_data, append_morphology=False, merge_subtokens=False, ner_tag_pattern="", ner_map=None): """ Yield examples, one for each sentence """ vocab = Language.Defaults.create_vocab() # need vocab to make a minimal Doc i = 0 for sent in input_data.strip().split("\n\n"): lines = sent.strip().split("\n") if lines: while lines[0].startswith("#"): lines.pop(0) example = example_from_conllu_sentence(vocab, lines, ner_tag_pattern, merge_subtokens=merge_subtokens, append_morphology=append_morphology, ner_map=ner_map) yield example def get_entities(lines, tag_pattern, ner_map=None): """Find entities in the MISC column according to the pattern and map to final entity type with `ner_map` if mapping present. Entity tag is 'O' if the pattern is not matched. lines (unicode): CONLL-U lines for one sentences tag_pattern (unicode): Regex pattern for entity tag ner_map (dict): Map old NER tag names to new ones, '' maps to O. RETURNS (list): List of BILUO entity tags """ miscs = [] for line in lines: parts = line.split("\t") id_, word, lemma, pos, tag, morph, head, dep, _1, misc = parts if "-" in id_ or "." in id_: continue miscs.append(misc) iob = [] for misc in miscs: tag_match = re.search(tag_pattern, misc) iob_tag = "O" if tag_match: prefix = tag_match.group(2) suffix = tag_match.group(3) if prefix and suffix: iob_tag = prefix + "-" + suffix if ner_map: suffix = ner_map.get(suffix, suffix) if suffix == "": iob_tag = "O" else: iob_tag = prefix + "-" + suffix iob.append(iob_tag) return iob_to_biluo(iob) def generate_sentence(token_annotation, has_ner_tags, tag_pattern, ner_map=None): sentence = {} tokens = [] for i, id_ in enumerate(token_annotation.ids): token = {} token["id"] = id_ token["orth"] = token_annotation.get_word(i) token["tag"] = token_annotation.get_tag(i) token["pos"] = token_annotation.get_pos(i) token["lemma"] = token_annotation.get_lemma(i) token["morph"] = token_annotation.get_morph(i) token["head"] = token_annotation.get_head(i) - id_ token["dep"] = token_annotation.get_dep(i) if has_ner_tags: token["ner"] = token_annotation.get_entity(i) tokens.append(token) sentence["tokens"] = tokens return sentence def create_json_doc(raw, sentences, id_): doc = {} paragraph = {} doc["id"] = id_ doc["paragraphs"] = [] paragraph["raw"] = raw.strip() paragraph["sentences"] = sentences doc["paragraphs"].append(paragraph) return doc def example_from_conllu_sentence(vocab, lines, ner_tag_pattern, merge_subtokens=False, append_morphology=False, ner_map=None): """Create an Example from the lines for one CoNLL-U sentence, merging subtokens and appending morphology to tags if required. lines (unicode): The non-comment lines for a CoNLL-U sentence ner_tag_pattern (unicode): The regex pattern for matching NER in MISC col RETURNS (Example): An example containing the annotation """ # create a Doc with each subtoken as its own token # if merging subtokens, each subtoken orth is the merged subtoken form if not Token.has_extension("merged_orth"): Token.set_extension("merged_orth", default="") if not Token.has_extension("merged_lemma"): Token.set_extension("merged_lemma", default="") if not Token.has_extension("merged_morph"): Token.set_extension("merged_morph", default="") if not Token.has_extension("merged_spaceafter"): Token.set_extension("merged_spaceafter", default="") words, spaces, tags, poses, morphs, lemmas = [], [], [], [], [], [] heads, deps = [], [] subtok_word = "" in_subtok = False for i in range(len(lines)): line = lines[i] subtok_lines = [] parts = line.split("\t") id_, word, lemma, pos, tag, morph, head, dep, _1, misc = parts if "." in id_: continue if "-" in id_: in_subtok = True if "-" in id_: in_subtok = True subtok_word = word subtok_start, subtok_end = id_.split("-") subtok_spaceafter = "SpaceAfter=No" not in misc continue if merge_subtokens and in_subtok: words.append(subtok_word) else: words.append(word) if in_subtok: if id_ == subtok_end: spaces.append(subtok_spaceafter) else: spaces.append(False) elif "SpaceAfter=No" in misc: spaces.append(False) else: spaces.append(True) if in_subtok and id_ == subtok_end: subtok_word = "" in_subtok = False id_ = int(id_) - 1 head = (int(head) - 1) if head != "0" else id_ tag = pos if tag == "_" else tag morph = morph if morph != "_" else "" dep = "ROOT" if dep == "root" else dep lemmas.append(lemma) poses.append(pos) tags.append(tag) morphs.append(morph) heads.append(head) deps.append(dep) doc = Doc(vocab, words=words, spaces=spaces) for i in range(len(doc)): doc[i].tag_ = tags[i] doc[i].pos_ = poses[i] doc[i].dep_ = deps[i] doc[i].lemma_ = lemmas[i] doc[i].head = doc[heads[i]] doc[i]._.merged_orth = words[i] doc[i]._.merged_morph = morphs[i] doc[i]._.merged_lemma = lemmas[i] doc[i]._.merged_spaceafter = spaces[i] ents = get_entities(lines, ner_tag_pattern, ner_map) doc.ents = spans_from_biluo_tags(doc, ents) doc.is_parsed = True doc.is_tagged = True if merge_subtokens: doc = merge_conllu_subtokens(lines, doc) # create Example from custom Doc annotation ids, words, tags, heads, deps = [], [], [], [], [] pos, lemmas, morphs, spaces = [], [], [], [] for i, t in enumerate(doc): ids.append(i) words.append(t._.merged_orth) if append_morphology and t._.merged_morph: tags.append(t.tag_ + "__" + t._.merged_morph) else: tags.append(t.tag_) pos.append(t.pos_) morphs.append(t._.merged_morph) lemmas.append(t._.merged_lemma) heads.append(t.head.i) deps.append(t.dep_) spaces.append(t._.merged_spaceafter) ent_offsets = [(e.start_char, e.end_char, e.label_) for e in doc.ents] ents = biluo_tags_from_offsets(doc, ent_offsets) raw = "" for word, space in zip(words, spaces): raw += word if space: raw += " " example = Example(doc=raw) example.set_token_annotation(ids=ids, words=words, tags=tags, pos=pos, morphs=morphs, lemmas=lemmas, heads=heads, deps=deps, entities=ents) return example def merge_conllu_subtokens(lines, doc): # identify and process all subtoken spans to prepare attrs for merging subtok_spans = [] for line in lines: parts = line.split("\t") id_, word, lemma, pos, tag, morph, head, dep, _1, misc = parts if "-" in id_: subtok_start, subtok_end = id_.split("-") subtok_span = doc[int(subtok_start) - 1:int(subtok_end)] subtok_spans.append(subtok_span) # create merged tag, morph, and lemma values tags = [] morphs = {} lemmas = [] for token in subtok_span: tags.append(token.tag_) lemmas.append(token.lemma_) if token._.merged_morph: for feature in token._.merged_morph.split("|"): field, values = feature.split("=", 1) if not field in morphs: morphs[field] = set() for value in values.split(","): morphs[field].add(value) # create merged features for each morph field for field, values in morphs.items(): morphs[field] = field + "=" + ",".join(sorted(values)) # set the same attrs on all subtok tokens so that whatever head the # retokenizer chooses, the final attrs are available on that token for token in subtok_span: token._.merged_orth = token.orth_ token._.merged_lemma = " ".join(lemmas) token.tag_ = "_".join(tags) token._.merged_morph = "|".join(sorted(morphs.values())) token._.merged_spaceafter = True if subtok_span[-1].whitespace_ else False with doc.retokenize() as retokenizer: for span in subtok_spans: retokenizer.merge(span) return doc