* verbose and tag_map options
* adding init_tok2vec option and only changing the tok2vec that is specified
* adding omit_extra_lookups and verifying textcat config
* wip
* pretrain bugfix
* add replace and resume options
* train_textcat fix
* raw text functionality
* improve UX when KeyError or when input data can't be parsed
* avoid unnecessary access to goldparse in TextCat pipe
* save performance information in nlp.meta
* add noise_level to config
* move nn_parser's defaults to config file
* multitask in config - doesn't work yet
* scorer offering both F and AUC options, need to be specified in config
* add textcat verification code from old train script
* small fixes to config files
* clean up
* set default config for ner/parser to allow create_pipe to work as before
* two more test fixes
* small fixes
* cleanup
* fix NER pickling + additional unit test
* create_pipe as before
* Reduce stored lexemes data, move feats to lookups
* Move non-derivable lexemes features (`norm / cluster / prob`) to
`spacy-lookups-data` as lookups
* Get/set `norm` in both lookups and `LexemeC`, serialize in lookups
* Remove `cluster` and `prob` from `LexemesC`, get/set/serialize in
lookups only
* Remove serialization of lexemes data as `vocab/lexemes.bin`
* Remove `SerializedLexemeC`
* Remove `Lexeme.to_bytes/from_bytes`
* Modify normalization exception loading:
* Always create `Vocab.lookups` table `lexeme_norm` for
normalization exceptions
* Load base exceptions from `lang.norm_exceptions`, but load
language-specific exceptions from lookups
* Set `lex_attr_getter[NORM]` including new lookups table in
`BaseDefaults.create_vocab()` and when deserializing `Vocab`
* Remove all cached lexemes when deserializing vocab to override
existing normalizations with the new normalizations (as a replacement
for the previous step that replaced all lexemes data with the
deserialized data)
* Skip English normalization test
Skip English normalization test because the data is now in
`spacy-lookups-data`.
* Remove norm exceptions
Moved to spacy-lookups-data.
* Move norm exceptions test to spacy-lookups-data
* Load extra lookups from spacy-lookups-data lazily
Load extra lookups (currently for cluster and prob) lazily from the
entry point `lg_extra` as `Vocab.lookups_extra`.
* Skip creating lexeme cache on load
To improve model loading times, do not create the full lexeme cache when
loading. The lexemes will be created on demand when processing.
* Identify numeric values in Lexeme.set_attrs()
With the removal of a special case for `PROB`, also identify `float` to
avoid trying to convert it with the `StringStore`.
* Skip lexeme cache init in from_bytes
* Unskip and update lookups tests for python3.6+
* Update vocab pickle to include lookups_extra
* Update vocab serialization tests
Check strings rather than lexemes since lexemes aren't initialized
automatically, account for addition of "_SP".
* Re-skip lookups test because of python3.5
* Skip PROB/float values in Lexeme.set_attrs
* Convert is_oov from lexeme flag to lex in vectors
Instead of storing `is_oov` as a lexeme flag, `is_oov` reports whether
the lexeme has a vector.
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
* Draft layer for BILUO actions
* Fixes to biluo layer
* WIP on BILUO layer
* Add tests for BILUO layer
* Format
* Fix transitions
* Update test
* Link in the simple_ner
* Update BILUO tagger
* Update __init__
* Import simple_ner
* Update test
* Import
* Add files
* Add config
* Fix label passing for BILUO and tagger
* Fix label handling for simple_ner component
* Update simple NER test
* Update config
* Hack train script
* Update BILUO layer
* Fix SimpleNER component
* Update train_from_config
* Add biluo_to_iob helper
* Add IOB layer
* Add IOBTagger model
* Update biluo layer
* Update SimpleNER tagger
* Update BILUO
* Read random seed in train-from-config
* Update use of normal_init
* Fix normalization of gradient in SimpleNER
* Update IOBTagger
* Remove print
* Tweak masking in BILUO
* Add dropout in SimpleNER
* Update thinc
* Tidy up simple_ner
* Fix biluo model
* Unhack train-from-config
* Update setup.cfg and requirements
* Add tb_framework.py for parser model
* Try to avoid memory leak in BILUO
* Move ParserModel into spacy.ml, avoid need for subclass.
* Use updated parser model
* Remove incorrect call to model.initializre in PrecomputableAffine
* Update parser model
* Avoid divide by zero in tagger
* Add extra dropout layer in tagger
* Refine minibatch_by_words function to avoid oom
* Fix parser model after refactor
* Try to avoid div-by-zero in SimpleNER
* Fix infinite loop in minibatch_by_words
* Use SequenceCategoricalCrossentropy in Tagger
* Fix parser model when hidden layer
* Remove extra dropout from tagger
* Add extra nan check in tagger
* Fix thinc version
* Update tests and imports
* Fix test
* Update test
* Update tests
* Fix tests
* Fix test
Co-authored-by: Ines Montani <ines@ines.io>
* Update sentence recognizer
* rename `sentrec` to `senter`
* use `spacy.HashEmbedCNN.v1` by default
* update to follow `Tagger` modifications
* remove component methods that can be inherited from `Tagger`
* add simple initialization and overfitting pipeline tests
* Update serialization test for senter
* fix grad_clip naming
* cleaning up pretrained_vectors out of cfg
* further refactoring Model init's
* move Model building out of pipes
* further refactor to require a model config when creating a pipe
* small fixes
* making cfg in nn_parser more consistent
* fixing nr_class for parser
* fixing nn_parser's nO
* fix printing of loss
* architectures in own file per type, consistent naming
* convenience methods default_tagger_config and default_tok2vec_config
* let create_pipe access default config if available for that component
* default_parser_config
* move defaults to separate folder
* allow reading nlp from package or dir with argument 'name'
* architecture spacy.VocabVectors.v1 to read static vectors from file
* cleanup
* default configs for nel, textcat, morphologizer, tensorizer
* fix imports
* fixing unit tests
* fixes and clean up
* fixing defaults, nO, fix unit tests
* restore parser IO
* fix IO
* 'fix' serialization test
* add *.cfg to manifest
* fix example configs with additional arguments
* replace Morpohologizer with Tagger
* add IO bit when testing overfitting of tagger (currently failing)
* fix IO - don't initialize when reading from disk
* expand overfitting tests to also check IO goes OK
* remove dropout from HashEmbed to fix Tagger performance
* add defaults for sentrec
* update thinc
* always pass a Model instance to a Pipe
* fix piped_added statement
* remove obsolete W029
* remove obsolete errors
* restore byte checking tests (work again)
* clean up test
* further test cleanup
* convert from config to Model in create_pipe
* bring back error when component is not initialized
* cleanup
* remove calls for nlp2.begin_training
* use thinc.api in imports
* allow setting charembed's nM and nC
* fix for hardcoded nM/nC + unit test
* formatting fixes
* trigger build
* expand serialization test for custom token attribute
* add failing test for issue 4849
* define ENT_ID as attr and use in doc serialization
* fix few typos
* Include Doc.cats in to_bytes()
* Include Doc.cats in DocBin serialization
* Add tests for serialization of cats
Test serialization of cats for Doc and DocBin.
* Add sent_starts to GoldParse
* Add SentTagger pipeline component
Add `SentTagger` pipeline component as a subclass of `Tagger`.
* Model reduces default parameters from `Tagger` to be small and fast
* Hard-coded set of two labels:
* S (1): token at beginning of sentence
* I (0): all other sentence positions
* Sets `token.sent_start` values
* Add sentence segmentation to Scorer
Report `sent_p/r/f` for sentence boundaries, which may be provided by
various pipeline components.
* Add sentence segmentation to CLI evaluate
* Add senttagger metrics/scoring to train CLI
* Rename SentTagger to SentenceRecognizer
* Add SentenceRecognizer to spacy.pipes imports
* Add SentenceRecognizer serialization test
* Shorten component name to sentrec
* Remove duplicates from train CLI output metrics
* Improve load_language_data helper
* WIP: Add Lookups implementation
* Start moving lemma data over to JSON
* WIP: move data over for more languages
* Convert more languages
* Fix lemmatizer fixtures in tests
* Finish conversion
* Auto-format JSON files
* Fix test for now
* Make sure tables are stored on instance
* Update docstrings
* Update docstrings and errors
* Update test
* Add Lookups.__len__
* Add serialization methods
* Add Lookups.remove_table
* Use msgpack for serialization to disk
* Fix file exists check
* Try using OrderedDict for everything
* Update .flake8 [ci skip]
* Try fixing serialization
* Update test_lookups.py
* Update test_serialize_vocab_strings.py
* Fix serialization for lookups
* Fix lookups
* Fix lookups
* Fix lookups
* Try to fix serialization
* Try to fix serialization
* Try to fix serialization
* Try to fix serialization
* Give up on serialization test
* Xfail more serialization tests for 3.5
* Fix lookups for 2.7
* document token ent_kb_id
* document span kb_id
* update pipeline documentation
* prior and context weights as bool's instead
* entitylinker api documentation
* drop for both models
* finish entitylinker documentation
* small fixes
* documentation for KB
* candidate documentation
* links to api pages in code
* small fix
* frequency examples as counts for consistency
* consistent documentation about tensors returned by predict
* add entity linking to usage 101
* add entity linking infobox and KB section to 101
* entity-linking in linguistic features
* small typo corrections
* training example and docs for entity_linker
* predefined nlp and kb
* revert back to similarity encodings for simplicity (for now)
* set prior probabilities to 0 when excluded
* code clean up
* bugfix: deleting kb ID from tokens when entities were removed
* refactor train el example to use either model or vocab
* pretrain_kb example for example kb generation
* add to training docs for KB + EL example scripts
* small fixes
* error numbering
* ensure the language of vocab and nlp stay consistent across serialization
* equality with =
* avoid conflict in errors file
* add error 151
* final adjustements to the train scripts - consistency
* update of goldparse documentation
* small corrections
* push commit
* turn kb_creator into CLI script (wip)
* proper parameters for training entity vectors
* wikidata pipeline split up into two executable scripts
* remove context_width
* move wikidata scripts in bin directory, remove old dummy script
* refine KB script with logs and preprocessing options
* small edits
* small improvements to logging of EL CLI script
* Make serialization methods consistent
exclude keyword argument instead of random named keyword arguments and deprecation handling
* Update docs and add section on serialization fields
* Auto-format tests with black
* Add flake8 config
* Tidy up and remove unused imports
* Fix redefinitions of test functions
* Replace orths_and_spaces with words and spaces
* Fix compatibility with pytest 4.0
* xfail test for now
Test was previously overwritten by following test due to naming conflict, so failure wasn't reported
* Unfail passing test
* Only use fixture via arguments
Fixes pytest 4.0 compatibility
## Description
Related issues: #2379 (should be fixed by separating model tests)
* **total execution time down from > 300 seconds to under 60 seconds** 🎉
* removed all model-specific tests that could only really be run manually anyway – those will now live in a separate test suite in the [`spacy-models`](https://github.com/explosion/spacy-models) repository and are already integrated into our new model training infrastructure
* changed all relative imports to absolute imports to prepare for moving the test suite from `/spacy/tests` to `/tests` (it'll now always test against the installed version)
* merged old regression tests into collections, e.g. `test_issue1001-1500.py` (about 90% of the regression tests are very short anyways)
* tidied up and rewrote existing tests wherever possible
### Todo
- [ ] move tests to `/tests` and adjust CI commands accordingly
- [x] move model test suite from internal repo to `spacy-models`
- [x] ~~investigate why `pipeline/test_textcat.py` is flakey~~
- [x] review old regression tests (leftover files) and see if they can be merged, simplified or deleted
- [ ] update documentation on how to run tests
### Types of change
enhancement, tests
## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [x] I have submitted the spaCy Contributor Agreement.
- [x] I ran the tests, and all new and existing tests passed.
- [ ] My changes don't require a change to the documentation, or if they do, I've added all required information.
Ines Montani