Commit Graph

292 Commits

Author SHA1 Message Date
Sofie Van Landeghem f67343295d
Update NEL examples and documentation (#5370)
* simplify creation of KB by skipping dim reduction

* small fixes to train EL example script

* add KB creation and NEL training example scripts to example section

* update descriptions of example scripts in the documentation

* moving wiki_entity_linking folder from bin to projects

* remove test for wiki NEL functionality that is being moved
2020-04-29 12:53:53 +02:00
Jakob Jul Elben 663333c3b2
Fixes #5413 (#5315)
* Fix 5314

* Add contributor

* Resolve requested changes

Co-authored-by: Jakob Jul Elben <jakob@datamaga.com>
2020-04-16 13:29:02 +02:00
Sofie Van Landeghem 9cf965c260
avoid enumerate to avoid long waiting at 0% (#5159) 2020-04-02 15:04:15 +02:00
Yohei Tamura 31755630a7
fix typ (#5106) 2020-03-08 13:24:38 +01:00
Sofie Van Landeghem c70ccd543d Friendly error warning for NEL example script (#4881)
* make model positional arg and raise error if no vectors

* small doc fixes
2020-01-14 01:51:14 +01:00
Sofie Van Landeghem 7b96a5e10f Reduce mem usage in training Entity Linker (#4811)
* move nlp processing for el pipe to batch training instead of preprocessing

* adding dev eval back in, and limit in articles instead of entities

* use pipe whenever possible

* few more small doc changes

* access dev data through generator

* tqdm description

* small fixes

* update documentation
2020-01-06 14:59:50 +01:00
Anastasiia Iurshina db9257559c Adds script shebang (#4846) 2019-12-29 14:25:05 +01:00
Sofie Van Landeghem 12158c1e3a Restore tqdm imports (#4804)
* set 4.38.0 to minimal version with color bug fix

* set imports back to proper place

* add upper range for tqdm
2019-12-16 13:12:19 +01:00
adrianeboyd f415e9b7d1 Set extensions when write_conllu() is called in UD train script (#4618)
* Set extensions when write_conllu() is called

`run_eval.py` uses the `write_conllu()` function from `ud_train.py` by
itself, so it needs to set the token extensions if necessary.

* Switch from try to if
2019-11-11 16:25:03 +01:00
Sofie Van Landeghem 4ec7623288 Fix conllu script (#4579)
* force extensions to avoid clash between example scripts

* fix arg order and default file encoding

* add example config for conllu script

* newline

* move extension definitions to main function

* few more encodings fixes
2019-11-04 20:31:26 +01:00
Sofie Van Landeghem 33ba9ff464 set encodings explicitly to utf8 (#4551) 2019-10-29 13:16:55 +01:00
Zhuoru Lin 10d88b09bb Bugfix/fix wikidata train entity linker (#4509)
* Fix labels_discard Nonetype iteration error

* Contributor agreement for Zhuoru Lin

* Enhance EntityLinker.predict() to handle labels_discard is None case.
2019-10-24 12:52:59 +02:00
Sofie Van Landeghem 2d249a9502 KB extensions and better parsing of WikiData (#4375)
* fix overflow error on windows

* more documentation & logging fixes

* md fix

* 3 different limit parameters to play with execution time

* bug fixes directory locations

* small fixes

* exclude dev test articles from prior probabilities stats

* small fixes

* filtering wikidata entities, removing numeric and meta items

* adding aliases from wikidata also to the KB

* fix adding WD aliases

* adding also new aliases to previously added entities

* fixing comma's

* small doc fixes

* adding subclassof filtering

* append alias functionality in KB

* prevent appending the same entity-alias pair

* fix for appending WD aliases

* remove date filter

* remove unnecessary import

* small corrections and reformatting

* remove WD aliases for now (too slow)

* removing numeric entities from training and evaluation

* small fixes

* shortcut during prediction if there is only one candidate

* add counts and fscore logging, remove FP NER from evaluation

* fix entity_linker.predict to take docs instead of single sentences

* remove enumeration sentences from the WP dataset

* entity_linker.update to process full doc instead of single sentence

* spelling corrections and dump locations in readme

* NLP IO fix

* reading KB is unnecessary at the end of the pipeline

* small logging fix

* remove empty files
2019-10-14 12:28:53 +02:00
Sofie Van Landeghem 4e7259c6cf Bugfix initializing DocBin with attributes (#4368)
* docbin init fix + documentation fix + unit tests

* newline

* try with zlib instead of gzip (python 2 incompatibilities)
2019-10-03 14:48:45 +02:00
Ines Montani b6670bf0c2 Use consistent spelling 2019-10-02 10:37:39 +02:00
adrianeboyd d844030fd8 Update UD bin scripts (#4315)
* Update imports for `bin/`
* Add all currently supported languages
* Update subtok merger for new Matcher validation
* Modify blinded check to look at tokens instead of lemmas (for corpora
with tokens but not lemmas like Telugu)
2019-09-27 16:20:38 +02:00
Ines Montani 27106d6528 Merge branch 'master' into develop 2019-09-13 17:07:17 +02:00
Euan Dowers a6830d60e8 Changes to wiki_entity_linker (#4235)
* Changes to wiki_entity_linker

* No more f-strings

* Make some requested changes

* Add back option to get descriptions from wd not wp

* Fix logs

* Address comments and clean evaluation

* Remove type hints

* Refactor evaluation, add back metrics by label

* Address comments

* Log training performance as well as dev
2019-09-13 17:03:57 +02:00
Matthew Honnibal 7b858ba606 Update from master 2019-09-10 20:14:08 +02:00
Sofie Van Landeghem 482c7cd1b9 pulling tqdm imports in functions to avoid bug (tmp fix) (#4263) 2019-09-09 16:32:11 +02:00
Matthew Honnibal 4e2f07a655 Merge branch 'develop' into feature/lemmatizer 2019-08-25 21:03:25 +02:00
Matthew Honnibal 9b5c94fed9 Add get-version script 2019-08-25 15:12:36 +02:00
Matthew Honnibal c308cf3e3e
Merge branch 'master' into feature/lemmatizer 2019-08-25 13:52:27 +02:00
Matthew Honnibal bcd08f20af Merge changes from master 2019-08-21 14:18:52 +02:00
adrianeboyd 8fe7bdd0fa Improve token pattern checking without validation (#4105)
* Fix typo in rule-based matching docs

* Improve token pattern checking without validation

Add more detailed token pattern checks without full JSON pattern validation and
provide more detailed error messages.

Addresses #4070 (also related: #4063, #4100).

* Check whether top-level attributes in patterns and attr for PhraseMatcher are
  in token pattern schema

* Check whether attribute value types are supported in general (as opposed to
  per attribute with full validation)

* Report various internal error types (OverflowError, AttributeError, KeyError)
  as ValueError with standard error messages

* Check for tagger/parser in PhraseMatcher pipeline for attributes TAG, POS,
  LEMMA, and DEP

* Add error messages with relevant details on how to use validate=True or nlp()
  instead of nlp.make_doc()

* Support attr=TEXT for PhraseMatcher

* Add NORM to schema

* Expand tests for pattern validation, Matcher, PhraseMatcher, and EntityRuler

* Remove unnecessary .keys()

* Rephrase error messages

* Add another type check to Matcher

Add another type check to Matcher for more understandable error messages
in some rare cases.

* Support phrase_matcher_attr=TEXT for EntityRuler

* Don't use spacy.errors in examples and bin scripts

* Fix error code

* Auto-format

Also try get Azure pipelines to finally start a build :(

* Update errors.py


Co-authored-by: Ines Montani <ines@ines.io>
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2019-08-21 14:00:37 +02:00
Sofie Van Landeghem 0ba1b5eebc CLI scripts for entity linking (wikipedia & generic) (#4091)
* document token ent_kb_id

* document span kb_id

* update pipeline documentation

* prior and context weights as bool's instead

* entitylinker api documentation

* drop for both models

* finish entitylinker documentation

* small fixes

* documentation for KB

* candidate documentation

* links to api pages in code

* small fix

* frequency examples as counts for consistency

* consistent documentation about tensors returned by predict

* add entity linking to usage 101

* add entity linking infobox and KB section to 101

* entity-linking in linguistic features

* small typo corrections

* training example and docs for entity_linker

* predefined nlp and kb

* revert back to similarity encodings for simplicity (for now)

* set prior probabilities to 0 when excluded

* code clean up

* bugfix: deleting kb ID from tokens when entities were removed

* refactor train el example to use either model or vocab

* pretrain_kb example for example kb generation

* add to training docs for KB + EL example scripts

* small fixes

* error numbering

* ensure the language of vocab and nlp stay consistent across serialization

* equality with =

* avoid conflict in errors file

* add error 151

* final adjustements to the train scripts - consistency

* update of goldparse documentation

* small corrections

* push commit

* turn kb_creator into CLI script (wip)

* proper parameters for training entity vectors

* wikidata pipeline split up into two executable scripts

* remove context_width

* move wikidata scripts in bin directory, remove old dummy script

* refine KB script with logs and preprocessing options

* small edits

* small improvements to logging of EL CLI script
2019-08-13 15:38:59 +02:00
svlandeg a037206f0a use pathlib instead 2019-07-23 12:17:19 +02:00
svlandeg cd6c263fe4 format offsets 2019-07-23 11:31:29 +02:00
svlandeg 3e140534d9 format 2019-07-22 15:04:57 +02:00
svlandeg dae8a21282 rename entity frequency 2019-07-19 17:40:28 +02:00
svlandeg f75d1299a7 formatting 2019-07-19 14:52:45 +02:00
svlandeg 21176517a7 have gold.links correspond exactly to doc.ents 2019-07-19 12:36:15 +02:00
svlandeg ec55d2fccd filter training data beforehand (+black formatting) 2019-07-18 10:22:24 +02:00
svlandeg d833d4c358 fixes in kb and gold 2019-07-17 17:18:26 +02:00
svlandeg 4086c6ff60 get vector functionality + unit test 2019-07-17 12:17:02 +02:00
svlandeg 0f0f07318a counter instead of preshcounter 2019-07-11 13:05:53 +02:00
svlandeg 3420cbe496 small fixes 2019-07-03 10:25:51 +02:00
svlandeg 68a0662019 context encoder with Tok2Vec + linking model instead of cosine 2019-06-28 08:29:31 +02:00
svlandeg b58bace84b small fixes 2019-06-24 10:55:04 +02:00
svlandeg cc9ae28a52 custom error and warning messages 2019-06-19 12:35:26 +02:00
svlandeg 791327e3c5 Merge remote-tracking branch 'upstream/master' into feature/nel-wiki 2019-06-19 09:44:05 +02:00
svlandeg a31648d28b further code cleanup 2019-06-19 09:15:43 +02:00
svlandeg 478305cd3f small tweaks and documentation 2019-06-18 18:38:09 +02:00
svlandeg 0d177c1146 clean up code, remove old code, move to bin 2019-06-18 13:20:40 +02:00
Paul O'Leary McCann 3f52e12335 Change vector training to work with latest gensim (fix #3749) (#3757) 2019-06-16 13:24:06 +02:00
Matthew Honnibal f6e9394aa5 Fix push-tag script 2019-05-11 19:04:35 +02:00
Ines Montani 7400c7f8a7 Move UD scripts to bin 2019-03-20 01:19:34 +01:00
Ines Montani 72fb324d95 Add vector training script to bin [ci skip] 2019-03-12 12:07:56 +01:00
Matthew Honnibal 70e5058d72 Update push-tag script 2019-03-11 22:27:10 +01:00
Sofie 46dfe773e1 Replacing regex library with re to increase tokenization speed (#3218)
* replace unicode categories with raw list of code points

* simplifying ranges

* fixing variable length quotes

* removing redundant regular expression

* small cleanup of regexp notations

* quotes and alpha as ranges instead of alterations

* removed most regexp dependencies and features

* exponential backtracking - unit tests

* rewrote expression with pathological backtracking

* disabling double hyphen tests for now

* test additional variants of repeating punctuation

* remove regex and redundant backslashes from load_reddit script

* small typo fixes

* disable double punctuation test for russian

* clean up old comments

* format block code

* final cleanup

* naming consistency

* french strings as unicode for python 2 support

* french regular expression case insensitive
2019-02-01 18:05:22 +11:00