Commit Graph

45 Commits

Author SHA1 Message Date
Ines Montani 33a2682d60
Add better schemas and validation using Pydantic (#4831)
* Remove unicode declarations

* Remove Python 3.5 and 2.7 from CI

* Don't require pathlib

* Replace compat helpers

* Remove OrderedDict

* Use f-strings

* Set Cython compiler language level

* Fix typo

* Re-add OrderedDict for Table

* Update setup.cfg

* Revert CONTRIBUTING.md

* Add better schemas and validation using Pydantic

* Revert lookups.md

* Remove unused import

* Update spacy/schemas.py

Co-Authored-By: Sebastián Ramírez <tiangolo@gmail.com>

* Various small fixes

* Fix docstring

Co-authored-by: Sebastián Ramírez <tiangolo@gmail.com>
2019-12-25 12:39:49 +01:00
Ines Montani db55577c45
Drop Python 2.7 and 3.5 (#4828)
* Remove unicode declarations

* Remove Python 3.5 and 2.7 from CI

* Don't require pathlib

* Replace compat helpers

* Remove OrderedDict

* Use f-strings

* Set Cython compiler language level

* Fix typo

* Re-add OrderedDict for Table

* Update setup.cfg

* Revert CONTRIBUTING.md

* Revert lookups.md

* Revert top-level.md

* Small adjustments and docs [ci skip]
2019-12-22 01:53:56 +01:00
adrianeboyd c208eb6e4d Fix int value handling in Matcher (#4749)
Add `int` values (for `LENGTH`) in _get_attr_values() instead of
treating `int` like `dict`.
2019-12-06 19:22:57 +01:00
Priscilla de Abreu Lopes 39e79fcc86 Bugfix/dep matcher issue 4590 (#4601)
* add contributor agreement for prilopes

* add test for issue #4590

* fix on_match params for DependencyMacther (#4590)
2019-11-07 12:01:06 +01:00
Ines Montani cfffdba7b1 Implement new API for {Phrase}Matcher.add (backwards-compatible) (#4522)
* Implement new API for {Phrase}Matcher.add (backwards-compatible)

* Update docs

* Also update DependencyMatcher.add

* Update internals

* Rewrite tests to use new API

* Add basic check for common mistake

Raise error with suggestion if user likely passed in a pattern instead of a list of patterns

* Fix typo [ci skip]
2019-10-25 22:21:08 +02:00
Sofie Van Landeghem 48886afc78 prevent zero-length mem alloc (#4429)
* raise specific error when removing a matcher rule that doesn't exist

* rephrasing

* goldparse init: allocate fields only if doc is not empty

* avoid zero length alloc in saving tokenizer cache

* avoid allocating zero length mem in matcher

* asserts to avoid allocating zero length mem

* fix zero-length allocation in matcher

* bump cymem version

* revert cymem version bump
2019-10-22 16:54:33 +02:00
adrianeboyd d359da9687 Replace Entity/MatchStruct with SpanC (#4459)
* Replace MatchStruct with Entity

Replace MatchStruct with Entity since the existing Entity struct is
nearly identical.

* Replace Entity with more general SpanC
2019-10-18 11:01:47 +02:00
adrianeboyd 275c9ad872 Allow int values in token patterns (#4444)
* Add missing int value option to top-level pattern validation in Matcher

* Adjust existing tests accordingly

* Add new test for valid pattern `{"LENGTH": int}`
2019-10-16 13:40:18 +02:00
Sofie Van Landeghem 7d1efac4eb Fix remove pattern from matcher (#4454)
* raise specific error when removing a matcher rule that doesn't exist

* rephrasing

* bugfix in remove matcher + extended unit test
2019-10-16 13:34:58 +02:00
adrianeboyd 98a961a60e Fix PhraseMatcher.remove for overlapping patterns (#4437) 2019-10-14 12:19:51 +02:00
Sofie Van Landeghem da6e0de34f fix attrs field in the matcher (#4423)
* raise specific error when removing a matcher rule that doesn't exist

* rephrasing

* ensure attrs is NULL when nr_attr == 0 + several fixes to prevent OOB
2019-10-10 15:20:59 +02:00
Sofie Van Landeghem 5efae495f1 Error when removing a matcher rule that doesn't exist (#4420)
* raise specific error when removing a matcher rule that doesn't exist

* rephrasing
2019-10-10 14:01:53 +02:00
Matthew Honnibal fa95c030a5
Unify matcher get_ent_id and get_pattern_key (#4415)
This is basically stabbing blindly at the ghost match problem, but it at
least seems like there was a bug previously here --- so this should
hopefully be an improvement, even if it doesn't fix the ghost match
problem.
2019-10-09 15:26:31 +02:00
adrianeboyd 14841d0aa6 Fix PhraseMatcher callback and add tests (#4399)
* Fix callback lookup in PhraseMatcher (string key rather than hash key)
* Add callback tests for Matcher and PhraseMatcher
2019-10-08 12:07:02 +02:00
Ines Montani 573e543e4a Alphanumeric -> alphabetic [ci skip]
see ines/spacy-course#38
2019-10-06 13:30:01 +02:00
Ines Montani fec9433044 Make PhraseMatcher.vocab consistent with Matcher.vocab (closes #4373) 2019-10-04 12:18:41 +02:00
adrianeboyd ba5595c764 Fix PhraseMatcher to remember attr on pickling (#4336)
* Fix PhraseMatcher to remember attr on pickling

* Check for attr as int or long
2019-09-29 17:12:33 +02:00
Ines Montani aad66d9bb9 Document PhraseMatcher.remove [ci skip] 2019-09-27 16:34:53 +02:00
adrianeboyd c23edf302b Replace PhraseMatcher with trie-based search (#4309)
* Replace PhraseMatcher with Aho-Corasick

Replace PhraseMatcher with the Aho-Corasick algorithm over numpy arrays
of the hash values for the relevant attribute. The implementation is
based on FlashText.

The speed should be similar to the previous PhraseMatcher. It is now
possible to easily remove match IDs and matches don't go missing with
large keyword lists / vocabularies.

Fixes #4308.

* Restore support for pickling

* Fix internal keyword add/remove for numpy arrays

* Add missing loop for match ID set in search loop

* Remove cruft in matching loop for partial matches

There was a bit of unnecessary code left over from FlashText in the
matching loop to handle partial token matches, which we don't have with
PhraseMatcher.

* Replace dict trie with MapStruct trie

* Fix how match ID hash is stored/added

* Update fix for match ID vocab

* Switch from map_get_unless_missing to map_get

* Switch from numpy array to Token.get_struct_attr

Access token attributes directly in Doc instead of making a copy of the
relevant values in a numpy array.

Add unsatisfactory warning for hash collision with reserved terminal
hash key. (Ideally it would change the reserved terminal hash and redo
the whole trie, but for now, I'm hoping there won't be collisions.)

* Restructure imports to export find_matches

* Implement full remove()

Remove unnecessary trie paths and free unused maps.

Parallel to Matcher, raise KeyError when attempting to remove a match ID
that has not been added.

* Store docs internally only as attr lists

* Reduces size for pickle

* Remove duplicate keywords store

Now that docs are stored as lists of attr hashes, there's no need to
have the duplicate _keywords store.
2019-09-27 16:22:34 +02:00
Ines Montani 52904b7270 Raise if on_match is not callable or None 2019-09-24 23:06:24 +02:00
Sean Löfgren 31c683d87d add return_matches and as_tuples back to Matcher.pipe (#4303)
* add contributor agreement [ci skip]

* add return_matches and as_tuples back to Matcher.pipe
2019-09-18 22:00:33 +02:00
Ines Montani cd90752193 Tidy up and auto-format [ci skip] 2019-08-31 13:39:06 +02:00
adrianeboyd 5feb342f5e Add more token attributes to token pattern schema (#4210)
Add token attributes with tests to token pattern schema.
2019-08-29 12:02:26 +02:00
Sofie Van Landeghem c417c380e3 Matcher ID fixes (#4179)
* allow phrasematcher to link one match to multiple original patterns

* small fix for defining ent_id in the matcher (anti-ghost prevention)

* cleanup

* formatting
2019-08-22 17:17:07 +02:00
Sofie Van Landeghem de272f8b82 adding double match for optional operator at the end (#4166) 2019-08-21 22:46:56 +02:00
Sofie Van Landeghem 7539a4f3a8 use states[q] in while retry loop (#4162) 2019-08-21 21:58:04 +02:00
adrianeboyd 2d17b047e2 Check for is_tagged/is_parsed for Matcher attrs (#4163)
Check for relevant components in the pipeline when Matcher is called,
similar to the checks for PhraseMatcher in #4105.

* keep track of attributes seen in patterns

* when Matcher is called on a Doc, check for is_tagged for LEMMA, TAG,
POS and for is_parsed for DEP
2019-08-21 20:52:36 +02:00
adrianeboyd 8fe7bdd0fa Improve token pattern checking without validation (#4105)
* Fix typo in rule-based matching docs

* Improve token pattern checking without validation

Add more detailed token pattern checks without full JSON pattern validation and
provide more detailed error messages.

Addresses #4070 (also related: #4063, #4100).

* Check whether top-level attributes in patterns and attr for PhraseMatcher are
  in token pattern schema

* Check whether attribute value types are supported in general (as opposed to
  per attribute with full validation)

* Report various internal error types (OverflowError, AttributeError, KeyError)
  as ValueError with standard error messages

* Check for tagger/parser in PhraseMatcher pipeline for attributes TAG, POS,
  LEMMA, and DEP

* Add error messages with relevant details on how to use validate=True or nlp()
  instead of nlp.make_doc()

* Support attr=TEXT for PhraseMatcher

* Add NORM to schema

* Expand tests for pattern validation, Matcher, PhraseMatcher, and EntityRuler

* Remove unnecessary .keys()

* Rephrase error messages

* Add another type check to Matcher

Add another type check to Matcher for more understandable error messages
in some rare cases.

* Support phrase_matcher_attr=TEXT for EntityRuler

* Don't use spacy.errors in examples and bin scripts

* Fix error code

* Auto-format

Also try get Azure pipelines to finally start a build :(

* Update errors.py


Co-authored-by: Ines Montani <ines@ines.io>
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2019-08-21 14:00:37 +02:00
Matthew Honnibal b40b4c2c31
💫 Fix issue #3839: Incorrect entity IDs from Matcher with operators (#3949)
* Add regression test for issue #3541

* Add comment on bugfix

* Remove incorrect test

* Un-xfail test
2019-07-11 12:55:11 +02:00
Suraj Rajan 46c78d0a41 Dependency tree pattern matcher (#3465)
* Functional dependency tree pattern matcher

* Tests fail due to inconsistent behaviour

* Renamed dependencymatcher and added optimizations
2019-06-16 13:25:32 +02:00
Ramanan Balakrishnan 26c37c5a4d fix all references to BILUO annotation format (#3797) 2019-05-31 12:19:19 +02:00
Ines Montani a7fd42d937 Make jsonschema dependency optional (#3784) 2019-05-30 14:34:58 +02:00
Ines Montani 4d198a7e92 Ensure match pattern error isn't raised on empty errors (closes #3549) 2019-04-09 12:50:43 +02:00
Ines Montani bec8db91e6 Add actual deprecation warning for n_threads (resolves #3410) 2019-03-15 16:38:44 +01:00
Ines Montani cb5dbfa63a Tidy up references to n_threads and fix default 2019-03-15 16:24:26 +01:00
Ines Montani 296446a1c8
Tidy up and improve docs and docstrings (#3370)
<!--- Provide a general summary of your changes in the title. -->

## Description
* tidy up and adjust Cython code to code style
* improve docstrings and make calling `help()` nicer
* add URLs to new docs pages to docstrings wherever possible, mostly to user-facing objects
* fix various typos and inconsistencies in docs

### Types of change
enhancement, docs

## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [x] I have submitted the spaCy Contributor Agreement.
- [x] I ran the tests, and all new and existing tests passed.
- [x] My changes don't require a change to the documentation, or if they do, I've added all required information.
2019-03-08 11:42:26 +01:00
Matthew Honnibal 8d6954e0e7 Fix matcher bug #3328 2019-02-27 10:25:39 +01:00
Matthew Honnibal 0d1ca15b13 💫 Fix bugs in matcher extensions. Closes #1971 (#3301)
* Fix matching on extension attrs and predicates

* Fix detection of match_id when using extension attributes. The match
ID is stored as the last entry in the pattern. We were checking for this
with nr_attr == 0, which didn't account for extension attributes.

* Fix handling of predicates. The wrong count was being passed through,
so even patterns that didn't have a predicate were being checked.

* Fix regex pattern

* Fix matcher set value test
2019-02-20 21:30:39 +01:00
Ines Montani b589b945db
Fix PhraseMatcher pickling and length (resolves #3248) (#3252) 2019-02-12 18:27:54 +01:00
Ines Montani 483dddc9bc 💫 Add token match pattern validation via JSON schemas (#3244)
* Add custom MatchPatternError

* Improve validators and add validation option to Matcher

* Adjust formatting

* Never validate in Matcher within PhraseMatcher

If we do decide to make validate default to True, the PhraseMatcher's Matcher shouldn't ever validate. Here, we create the patterns automatically anyways (and it's currently unclear whether the validation has performance impacts at a very large scale).
2019-02-13 01:47:26 +11:00
Ines Montani ad2a514cdf Show warning if phrase pattern Doc was overprocessed (#3255)
In most cases, the PhraseMatcher will match on the verbatim token text or as of v2.1, sometimes the lowercase text. This means that we only need a tokenized Doc, without any other attributes.

If phrase patterns are created by processing large terminology lists with the full `nlp` object, this easily can make things a lot slower, because all components will be applied, even if we don't actually need the attributes they set (like part-of-speech tags, dependency labels).

The warning message also includes a suggestion to use nlp.make_doc or nlp.tokenizer.pipe for even faster processing. For now, the validation has to be enabled explicitly by setting validate=True.
2019-02-13 01:45:31 +11:00
Ines Montani 694139aad3 Fix formatting [ci skip] 2019-02-08 16:32:36 +01:00
Ines Montani 2898768757 Remove unused attribute [ci skip] 2019-02-08 16:31:30 +01:00
Ines Montani 25602c794c Tidy up and fix small bugs and typos 2019-02-08 14:14:49 +01:00
Ines Montani 1ea4df459d 💫 Break up large matcher.pyx (#3236)
* Break up large matcher.pyx

* Remove unused function
2019-02-07 19:42:25 +11:00