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13 Commits

Author SHA1 Message Date
Daniël de Kok e2b70df012
Configure isort to use the Black profile, recursively isort the `spacy` module (#12721) 
* Use isort with Black profile

* isort all the things

* Fix import cycles as a result of import sorting

* Add DOCBIN_ALL_ATTRS type definition

* Add isort to requirements

* Remove isort from build dependencies check

* Typo
 2023-06-14 17:48:41 +02:00
Matthew Honnibal f277bfdf0f
Add SpanGroup and Graph container types to represent arbitrary annotations (#6696) 
* Draft out initial Spans data structure

* Initial span group commit

* Basic span group support on Doc

* Basic test for span group

* Compile span_group.pyx

* Draft addition of SpanGroup to DocBin

* Add deserialization for SpanGroup

* Add tests for serializing SpanGroup

* Fix serialization of SpanGroup

* Add EdgeC and GraphC structs

* Add draft Graph data structure

* Compile graph

* More work on Graph

* Update GraphC

* Upd graph

* Fix walk functions

* Let Graph take nodes and edges on construction

* Fix walking and getting

* Add graph tests

* Fix import

* Add module with the SpanGroups dict thingy

* Update test

* Rename 'span_groups' attribute

* Try to fix c++11 compilation

* Fix test

* Update DocBin

* Try to fix compilation

* Try to fix graph

* Improve SpanGroup docstrings

* Add doc.spans to documentation

* Fix serialization

* Tidy up and add docs

* Update docs [ci skip]

* Add SpanGroup.has_overlap

* WIP updated Graph API

* Start testing new Graph API

* Update Graph tests

* Update Graph

* Add docstring

Co-authored-by: Ines Montani <ines@ines.io>
 2021-01-14 17:30:41 +11:00
Adriane Boyd 727370c633 Remove Span._recalculate_indices 
Remove `Span._recalculate_indices`, which is a remnant from the
deprecated `Span.merge`.
 2020-10-09 14:42:51 +02:00
svlandeg 735fc2a735 annotate kb_id through ents in doc 2019-03-22 11:36:44 +01:00
Matthew Honnibal 482bba1722 Add Span.to_array method 2017-08-19 12:20:45 +02:00
Matthew Honnibal 7996d21717 Fixes for new StringStore 2017-05-28 11:09:27 -05:00
Matthew Honnibal 8829984efb Remove tensor attribute from Span and Token. 2016-10-17 02:44:04 +02:00
Matthew Honnibal f3be9d0a9a Add tensor field to Lexeme, Token, Doc and Span, so that users have a place to hang neural network outputs 2016-10-14 03:24:13 +02:00
Matthew Honnibal 7663970d5f * Removed unused i variable from Span, and set attributes to read-only 2015-11-07 17:06:15 +11:00
Matthew Honnibal a9b612abdf * Rework the Span-merge patch, to avoid extending the interface of Doc, and avoid virtualizing the Span.start and Span.end indices, to keep Span usage efficient 2015-11-07 09:01:12 +11:00
Matthew Honnibal 56499d89ef * Rework the Span-merge patch, to avoid extending the interface of Doc, and avoid virtualizing the Span.start and Span.end indices, to keep Span usage efficient 2015-11-07 08:55:34 +11:00
Andreas Grivas 4be7fda453 * span start, end -> properties. autoupdate after merge 2015-11-07 07:57:04 +11:00
Matthew Honnibal 9482d616bc * Rename spans.pyx to span.pyx 2015-11-03 23:51:05 +11:00