spaCy/website/docs/api/spancategorizer.mdx

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Add SpanCategorizer component (#6747) * Draft spancat model * Add spancat model * Add test for extract_spans * Add extract_spans layer * Upd extract_spans * Add spancat model * Add test for spancat model * Upd spancat model * Update spancat component * Upd spancat * Update spancat model * Add quick spancat test * Import SpanCategorizer * Fix SpanCategorizer component * Import SpanGroup * Fix span extraction * Fix import * Fix import * Upd model * Update spancat models * Add scoring, update defaults * Update and add docs * Fix type * Update spacy/ml/extract_spans.py * Auto-format and fix import * Fix comment * Fix type * Fix type * Update website/docs/api/spancategorizer.md * Fix comment Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Better defense Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Fix labels list Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/ml/extract_spans.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/pipeline/spancat.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Set annotations during update * Set annotations in spancat * fix imports in test * Update spacy/pipeline/spancat.py * replace MaxoutLogistic with LinearLogistic * fix config * various small fixes * remove set_annotations parameter in update * use our beloved tupley format with recent support for doc.spans * bugfix to allow renaming the default span_key (scores weren't showing up) * use different key in docs example * change defaults to better-working parameters from project (WIP) * register spacy.extract_spans.v1 for legacy purposes * Upd dev version so can build wheel * layers instead of architectures for smaller building blocks * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Include additional scores from overrides in combined score weights * Parameterize spans key in scoring Parameterize the `SpanCategorizer` `spans_key` for scoring purposes so that it's possible to evaluate multiple `spancat` components in the same pipeline. * Use the (intentionally very short) default spans key `sc` in the `SpanCategorizer` * Adjust the default score weights to include the default key * Adjust the scorer to use `spans_{spans_key}` as the prefix for the returned score * Revert addition of `attr_name` argument to `score_spans` and adjust the key in the `getter` instead. Note that for `spancat` components with a custom `span_key`, the score weights currently need to be modified manually in `[training.score_weights]` for them to be available during training. To suppress the default score weights `spans_sc_p/r/f` during training, set them to `null` in `[training.score_weights]`. * Update website/docs/api/scorer.md * Fix scorer for spans key containing underscore * Increment version * Add Spans to Evaluate CLI (#8439) * Add Spans to Evaluate CLI * Change to spans_key * Add spans per_type output Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Fix spancat GPU issues (#8455) * Fix GPU issues * Require thinc >=8.0.6 * Switch to glorot_uniform_init * Fix and test ngram suggester * Include final ngram in doc for all sizes * Fix ngrams for docs of the same length as ngram size * Handle batches of docs that result in no ngrams * Add tests Co-authored-by: Ines Montani <ines@ines.io> Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> Co-authored-by: Nirant <NirantK@users.noreply.github.com>
2021-06-24 10:35:27 +00:00
---
title: SpanCategorizer
tag: class,experimental
source: spacy/pipeline/spancat.py
Website migration from Gatsby to Next (#12058) * Rename all MDX file to `.mdx` * Lock current node version (#11885) * Apply Prettier (#11996) * Minor website fixes (#11974) [ci skip] * fix table * Migrate to Next WEB-17 (#12005) * Initial commit * Run `npx create-next-app@13 next-blog` * Install MDX packages Following: https://github.com/vercel/next.js/blob/77b5f79a4dff453abb62346bf75b14d859539b81/packages/next-mdx/readme.md * Add MDX to Next * Allow Next to handle `.md` and `.mdx` files. * Add VSCode extension recommendation * Disabled TypeScript strict mode for now * Add prettier * Apply Prettier to all files * Make sure to use correct Node version * Add basic implementation for `MDXRemote` * Add experimental Rust MDX parser * Add `/public` * Add SASS support * Remove default pages and styling * Convert to module This allows to use `import/export` syntax * Add import for custom components * Add ability to load plugins * Extract function This will make the next commit easier to read * Allow to handle directories for page creation * Refactoring * Allow to parse subfolders for pages * Extract logic * Redirect `index.mdx` to parent directory * Disabled ESLint during builds * Disabled typescript during build * Remove Gatsby from `README.md` * Rephrase Docker part of `README.md` * Update project structure in `README.md` * Move and rename plugins * Update plugin for wrapping sections * Add dependencies for plugin * Use plugin * Rename wrapper type * Simplify unnessary adding of id to sections The slugified section ids are useless, because they can not be referenced anywhere anyway. The navigation only works if the section has the same id as the heading. * Add plugin for custom attributes on Markdown elements * Add plugin to readd support for tables * Add plugin to fix problem with wrapped images For more details see this issue: https://github.com/mdx-js/mdx/issues/1798 * Add necessary meta data to pages * Install necessary dependencies * Remove outdated MDX handling * Remove reliance on `InlineList` * Use existing Remark components * Remove unallowed heading Before `h1` components where not overwritten and would never have worked and they aren't used anywhere either. * Add missing components to MDX * Add correct styling * Fix broken list * Fix broken CSS classes * Implement layout * Fix links * Fix broken images * Fix pattern image * Fix heading attributes * Rename heading attribute `new` was causing some weird issue, so renaming it to `version` * Update comment syntax in MDX * Merge imports * Fix markdown rendering inside components * Add model pages * Simplify anchors * Fix default value for theme * Add Universe index page * Add Universe categories * Add Universe projects * Fix Next problem with copy Next complains when the server renders something different then the client, therfor we move the differing logic to `useEffect` * Fix improper component nesting Next doesn't allow block elements inside a `<p>` * Replace landing page MDX with page component * Remove inlined iframe content * Remove ability to inline HTML content in iFrames * Remove MDX imports * Fix problem with image inside link in MDX * Escape character for MDX * Fix unescaped characters in MDX * Fix headings with logo * Allow to export static HTML pages * Add prebuild script This command is automatically run by Next * Replace `svg-loader` with `react-inlinesvg` `svg-loader` is no longer maintained * Fix ESLint `react-hooks/exhaustive-deps` * Fix dropdowns * Change code language from `cli` to `bash` * Remove unnessary language `none` * Fix invalid code language `markdown_` with an underscore was used to basically turn of syntax highlighting, but using unknown languages know throws an error. * Enable code blocks plugin * Readd `InlineCode` component MDX2 removed the `inlineCode` component > The special component name `inlineCode` was removed, we recommend to use `pre` for the block version of code, and code for both the block and inline versions Source: https://mdxjs.com/migrating/v2/#update-mdx-content * Remove unused code * Extract function to own file * Fix code syntax highlighting * Update syntax for code block meta data * Remove unused prop * Fix internal link recognition There is a problem with regex between Node and browser, and since Next runs the component on both, this create an error. `Prop `rel` did not match. Server: "null" Client: "noopener nofollow noreferrer"` This simplifies the implementation and fixes the above error. * Replace `react-helmet` with `next/head` * Fix `className` problem for JSX component * Fix broken bold markdown * Convert file to `.mjs` to be used by Node process * Add plugin to replace strings * Fix custom table row styling * Fix problem with `span` inside inline `code` React doesn't allow a `span` inside an inline `code` element and throws an error in dev mode. * Add `_document` to be able to customize `<html>` and `<body>` * Add `lang="en"` * Store Netlify settings in file This way we don't need to update via Netlify UI, which can be tricky if changing build settings. * Add sitemap * Add Smartypants * Add PWA support * Add `manifest.webmanifest` * Fix bug with anchor links after reloading There was no need for the previous implementation, since the browser handles this nativly. Additional the manual scrolling into view was actually broken, because the heading would disappear behind the menu bar. * Rename custom event I was googeling for ages to find out what kind of event `inview` is, only to figure out it was a custom event with a name that sounds pretty much like a native one. 🫠 * Fix missing comment syntax highlighting * Refactor Quickstart component The previous implementation was hidding the irrelevant lines via data-props and dynamically generated CSS. This created problems with Next and was also hard to follow. CSS was used to do what React is supposed to handle. The new implementation simplfy filters the list of children (React elements) via their props. * Fix syntax highlighting for Training Quickstart * Unify code rendering * Improve error logging in Juniper * Fix Juniper component * Automatically generate "Read Next" link * Add Plausible * Use recent DocSearch component and adjust styling * Fix images * Turn of image optimization > Image Optimization using Next.js' default loader is not compatible with `next export`. We currently deploy to Netlify via `next export` * Dont build pages starting with `_` * Remove unused files * Add Next plugin to Netlify * Fix button layout MDX automatically adds `p` tags around text on a new line and Prettier wants to put the text on a new line. Hacking with JSX string. * Add 404 page * Apply Prettier * Update Prettier for `package.json` Next sometimes wants to patch `package-lock.json`. The old Prettier setting indended with 4 spaces, but Next always indends with 2 spaces. Since `npm install` automatically uses the indendation from `package.json` for `package-lock.json` and to avoid the format switching back and forth, both files are now set to 2 spaces. * Apply Next patch to `package-lock.json` When starting the dev server Next would warn `warn - Found lockfile missing swc dependencies, patching...` and update the `package-lock.json`. These are the patched changes. * fix link Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * small backslash fixes * adjust to new style Co-authored-by: Marcus Blättermann <marcus@essenmitsosse.de>
2023-01-11 16:30:07 +00:00
version: 3.1
Add SpanCategorizer component (#6747) * Draft spancat model * Add spancat model * Add test for extract_spans * Add extract_spans layer * Upd extract_spans * Add spancat model * Add test for spancat model * Upd spancat model * Update spancat component * Upd spancat * Update spancat model * Add quick spancat test * Import SpanCategorizer * Fix SpanCategorizer component * Import SpanGroup * Fix span extraction * Fix import * Fix import * Upd model * Update spancat models * Add scoring, update defaults * Update and add docs * Fix type * Update spacy/ml/extract_spans.py * Auto-format and fix import * Fix comment * Fix type * Fix type * Update website/docs/api/spancategorizer.md * Fix comment Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Better defense Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Fix labels list Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/ml/extract_spans.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/pipeline/spancat.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Set annotations during update * Set annotations in spancat * fix imports in test * Update spacy/pipeline/spancat.py * replace MaxoutLogistic with LinearLogistic * fix config * various small fixes * remove set_annotations parameter in update * use our beloved tupley format with recent support for doc.spans * bugfix to allow renaming the default span_key (scores weren't showing up) * use different key in docs example * change defaults to better-working parameters from project (WIP) * register spacy.extract_spans.v1 for legacy purposes * Upd dev version so can build wheel * layers instead of architectures for smaller building blocks * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Include additional scores from overrides in combined score weights * Parameterize spans key in scoring Parameterize the `SpanCategorizer` `spans_key` for scoring purposes so that it's possible to evaluate multiple `spancat` components in the same pipeline. * Use the (intentionally very short) default spans key `sc` in the `SpanCategorizer` * Adjust the default score weights to include the default key * Adjust the scorer to use `spans_{spans_key}` as the prefix for the returned score * Revert addition of `attr_name` argument to `score_spans` and adjust the key in the `getter` instead. Note that for `spancat` components with a custom `span_key`, the score weights currently need to be modified manually in `[training.score_weights]` for them to be available during training. To suppress the default score weights `spans_sc_p/r/f` during training, set them to `null` in `[training.score_weights]`. * Update website/docs/api/scorer.md * Fix scorer for spans key containing underscore * Increment version * Add Spans to Evaluate CLI (#8439) * Add Spans to Evaluate CLI * Change to spans_key * Add spans per_type output Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Fix spancat GPU issues (#8455) * Fix GPU issues * Require thinc >=8.0.6 * Switch to glorot_uniform_init * Fix and test ngram suggester * Include final ngram in doc for all sizes * Fix ngrams for docs of the same length as ngram size * Handle batches of docs that result in no ngrams * Add tests Co-authored-by: Ines Montani <ines@ines.io> Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> Co-authored-by: Nirant <NirantK@users.noreply.github.com>
2021-06-24 10:35:27 +00:00
teaser: 'Pipeline component for labeling potentially overlapping spans of text'
api_base_class: /api/pipe
api_string_name: spancat
api_trainable: true
---
A span categorizer consists of two parts: a [suggester function](#suggesters)
that proposes candidate spans, which may or may not overlap, and a labeler model
that predicts zero or more labels for each candidate.
Add spancat_singlelabel pipeline for multiclass and non-overlapping span labelling tasks (#11365) * [wip] Update * [wip] Update * Add initial port * [wip] Update * Fix all imports * Add spancat_exclusive to pipeline * [WIP] Update * [ci skip] Add breakpoint for debugging * Use spacy.SpanCategorizer.v1 as default archi * Update spacy/pipeline/spancat_exclusive.py Co-authored-by: kadarakos <kadar.akos@gmail.com> * [ci skip] Small updates * Use Softmax v2 directly from thinc * Cache the label map * Fix mypy errors However, I ignored line 370 because it opened up a bunch of type errors that might be trickier to solve and might lead to a more complicated codebase. * avoid multiplication with 1.0 Co-authored-by: kadarakos <kadar.akos@gmail.com> * Update spacy/pipeline/spancat_exclusive.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update component versions to v2 * Add scorer to docstring * Add _n_labels property to SpanCategorizer Instead of using len(self.labels) in initialize() I am using a private property self._n_labels. This achieves implementation parity and allows me to delete the whole initialize() method for spancat_exclusive (since it's now the same with spancat). * Inherit from SpanCat instead of TrainablePipe This commit changes the inheritance structure of Exclusive_Spancat, now it's inheriting from SpanCategorizer than TrainablePipe. This allows me to remove duplicate methods that are already present in the parent function. * Revert documentation link to spancat * Fix init call for exclusive spancat * Update spacy/pipeline/spancat_exclusive.py Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Import Suggester from spancat * Include zero_init.v1 for spancat * Implement _allow_extra_label to use _n_labels To ensure that spancat / spancat_exclusive cannot be resized after initialization, I inherited the _allow_extra_label() method from spacy/pipeline/trainable_pipe.pyx and used self._n_labels instead of len(self.labels) for checking. I think that changing it locally is a better solution rather than forcing each class that inherits TrainablePipe to use the self._n_labels attribute. Also note that I turned-off black formatting in this block of code because it reads better without the overhang. * Extend existing tests to spancat_exclusive In this commit, I extended the existing tests for spancat to include spancat_exclusive. I parametrized the test functions with 'name' (similar var name with textcat and textcat_multilabel) for each applicable test. TODO: Add overfitting tests for spancat_exclusive * Update documentation for spancat * Turn on formatting for allow_extra_label * Remove initializers in default config * Use DEFAULT_EXCL_SPANCAT_MODEL I also renamed spancat_exclusive_default_config into spancat_excl_default_config because black does some not pretty formatting changes. * Update documentation Update grammar and usage Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Clarify docstring for Exclusive_SpanCategorizer * Remove mypy ignore and typecast labels to list * Fix documentation API * Use a single variable for tests * Update defaults for number of rows Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Put back initializers in spancat config Whenever I remove model.scorer.init_w and model.scorer.init_b, I encounter an error in the test: SystemError: <method '__getitem__' of 'dict' objects> returned a result with an error set. My Thinc version is 8.1.5, but I can't seem to check what's causing the error. * Update spancat_exclusive docstring * Remove init_W and init_B parameters This commit is expected to fail until the new Thinc release. * Require thinc>=8.1.6 for serializable Softmax defaults * Handle zero suggestions to make tests pass I'm not sure if this is the most elegant solution. But what should happen is that the _make_span_group function MUST return an empty SpanGroup if there are no suggestions. The error happens when the 'scores' variable is empty. We cannot get the 'predicted' and other downstream vars. * Better approach for handling zero suggestions * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update spancategorizer headers * Apply suggestions from code review Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Add default value in negative_weight in docs * Add default value in allow_overlap in docs * Update how spancat_exclusive is constructed In this commit, I added the following: - Put the default values of negative_weight and allow_overlap in the default_config dictionary. - Rename make_spancat -> make_exclusive_spancat * Run prettier on spancategorizer.mdx * Change exactly one -> at most one * Add suggester documentation in Exclusive_SpanCategorizer * Add suggester to spancat docstrings * merge multilabel and singlelabel spancat * rename spancat_exclusive to singlelable * wire up different make_spangroups for single and multilabel * black * black * add docstrings * more docstring and fix negative_label * don't rely on default arguments * black * remove spancat exclusive * replace single_label with add_negative_label and adjust inference * mypy * logical bug in configuration check * add spans.attrs[scores] * single label make_spangroup test * bugfix * black * tests for make_span_group with negative labels * refactor make_span_group * black * Update spacy/tests/pipeline/test_spancat.py Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * remove duplicate declaration * Update spacy/pipeline/spancat.py Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * raise error instead of just print * make label mapper private * update docs * run prettier * Update website/docs/api/spancategorizer.mdx Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update website/docs/api/spancategorizer.mdx Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update spacy/pipeline/spancat.py Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update spacy/pipeline/spancat.py Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update spacy/pipeline/spancat.py Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update spacy/pipeline/spancat.py Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * don't keep recomputing self._label_map for each span * typo in docs * Intervals to private and document 'name' param * Update spacy/pipeline/spancat.py Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update spacy/pipeline/spancat.py Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * add Tag to new features * replace tags * revert * revert * revert * revert * Update website/docs/api/spancategorizer.mdx Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update website/docs/api/spancategorizer.mdx Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * prettier * Fix merge * Update website/docs/api/spancategorizer.mdx * remove references to 'single_label' * remove old paragraph * Add spancat_singlelabel to config template * Format * Extend init config tests --------- Co-authored-by: kadarakos <kadar.akos@gmail.com> Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2023-03-09 09:30:59 +00:00
This component comes in two forms: `spancat` and `spancat_singlelabel` (added in
spaCy v3.5.1). When you need to perform multi-label classification on your
spans, use `spancat`. The `spancat` component uses a `Logistic` layer where the
output class probabilities are independent for each class. However, if you need
to predict at most one true class for a span, then use `spancat_singlelabel`. It
uses a `Softmax` layer and treats the task as a multi-class problem.
Predicted spans will be saved in a [`SpanGroup`](/api/spangroup) on the doc.
Individual span scores can be found in `spangroup.attrs["scores"]`.
Website migration from Gatsby to Next (#12058) * Rename all MDX file to `.mdx` * Lock current node version (#11885) * Apply Prettier (#11996) * Minor website fixes (#11974) [ci skip] * fix table * Migrate to Next WEB-17 (#12005) * Initial commit * Run `npx create-next-app@13 next-blog` * Install MDX packages Following: https://github.com/vercel/next.js/blob/77b5f79a4dff453abb62346bf75b14d859539b81/packages/next-mdx/readme.md * Add MDX to Next * Allow Next to handle `.md` and `.mdx` files. * Add VSCode extension recommendation * Disabled TypeScript strict mode for now * Add prettier * Apply Prettier to all files * Make sure to use correct Node version * Add basic implementation for `MDXRemote` * Add experimental Rust MDX parser * Add `/public` * Add SASS support * Remove default pages and styling * Convert to module This allows to use `import/export` syntax * Add import for custom components * Add ability to load plugins * Extract function This will make the next commit easier to read * Allow to handle directories for page creation * Refactoring * Allow to parse subfolders for pages * Extract logic * Redirect `index.mdx` to parent directory * Disabled ESLint during builds * Disabled typescript during build * Remove Gatsby from `README.md` * Rephrase Docker part of `README.md` * Update project structure in `README.md` * Move and rename plugins * Update plugin for wrapping sections * Add dependencies for plugin * Use plugin * Rename wrapper type * Simplify unnessary adding of id to sections The slugified section ids are useless, because they can not be referenced anywhere anyway. The navigation only works if the section has the same id as the heading. * Add plugin for custom attributes on Markdown elements * Add plugin to readd support for tables * Add plugin to fix problem with wrapped images For more details see this issue: https://github.com/mdx-js/mdx/issues/1798 * Add necessary meta data to pages * Install necessary dependencies * Remove outdated MDX handling * Remove reliance on `InlineList` * Use existing Remark components * Remove unallowed heading Before `h1` components where not overwritten and would never have worked and they aren't used anywhere either. * Add missing components to MDX * Add correct styling * Fix broken list * Fix broken CSS classes * Implement layout * Fix links * Fix broken images * Fix pattern image * Fix heading attributes * Rename heading attribute `new` was causing some weird issue, so renaming it to `version` * Update comment syntax in MDX * Merge imports * Fix markdown rendering inside components * Add model pages * Simplify anchors * Fix default value for theme * Add Universe index page * Add Universe categories * Add Universe projects * Fix Next problem with copy Next complains when the server renders something different then the client, therfor we move the differing logic to `useEffect` * Fix improper component nesting Next doesn't allow block elements inside a `<p>` * Replace landing page MDX with page component * Remove inlined iframe content * Remove ability to inline HTML content in iFrames * Remove MDX imports * Fix problem with image inside link in MDX * Escape character for MDX * Fix unescaped characters in MDX * Fix headings with logo * Allow to export static HTML pages * Add prebuild script This command is automatically run by Next * Replace `svg-loader` with `react-inlinesvg` `svg-loader` is no longer maintained * Fix ESLint `react-hooks/exhaustive-deps` * Fix dropdowns * Change code language from `cli` to `bash` * Remove unnessary language `none` * Fix invalid code language `markdown_` with an underscore was used to basically turn of syntax highlighting, but using unknown languages know throws an error. * Enable code blocks plugin * Readd `InlineCode` component MDX2 removed the `inlineCode` component > The special component name `inlineCode` was removed, we recommend to use `pre` for the block version of code, and code for both the block and inline versions Source: https://mdxjs.com/migrating/v2/#update-mdx-content * Remove unused code * Extract function to own file * Fix code syntax highlighting * Update syntax for code block meta data * Remove unused prop * Fix internal link recognition There is a problem with regex between Node and browser, and since Next runs the component on both, this create an error. `Prop `rel` did not match. Server: "null" Client: "noopener nofollow noreferrer"` This simplifies the implementation and fixes the above error. * Replace `react-helmet` with `next/head` * Fix `className` problem for JSX component * Fix broken bold markdown * Convert file to `.mjs` to be used by Node process * Add plugin to replace strings * Fix custom table row styling * Fix problem with `span` inside inline `code` React doesn't allow a `span` inside an inline `code` element and throws an error in dev mode. * Add `_document` to be able to customize `<html>` and `<body>` * Add `lang="en"` * Store Netlify settings in file This way we don't need to update via Netlify UI, which can be tricky if changing build settings. * Add sitemap * Add Smartypants * Add PWA support * Add `manifest.webmanifest` * Fix bug with anchor links after reloading There was no need for the previous implementation, since the browser handles this nativly. Additional the manual scrolling into view was actually broken, because the heading would disappear behind the menu bar. * Rename custom event I was googeling for ages to find out what kind of event `inview` is, only to figure out it was a custom event with a name that sounds pretty much like a native one. 🫠 * Fix missing comment syntax highlighting * Refactor Quickstart component The previous implementation was hidding the irrelevant lines via data-props and dynamically generated CSS. This created problems with Next and was also hard to follow. CSS was used to do what React is supposed to handle. The new implementation simplfy filters the list of children (React elements) via their props. * Fix syntax highlighting for Training Quickstart * Unify code rendering * Improve error logging in Juniper * Fix Juniper component * Automatically generate "Read Next" link * Add Plausible * Use recent DocSearch component and adjust styling * Fix images * Turn of image optimization > Image Optimization using Next.js' default loader is not compatible with `next export`. We currently deploy to Netlify via `next export` * Dont build pages starting with `_` * Remove unused files * Add Next plugin to Netlify * Fix button layout MDX automatically adds `p` tags around text on a new line and Prettier wants to put the text on a new line. Hacking with JSX string. * Add 404 page * Apply Prettier * Update Prettier for `package.json` Next sometimes wants to patch `package-lock.json`. The old Prettier setting indended with 4 spaces, but Next always indends with 2 spaces. Since `npm install` automatically uses the indendation from `package.json` for `package-lock.json` and to avoid the format switching back and forth, both files are now set to 2 spaces. * Apply Next patch to `package-lock.json` When starting the dev server Next would warn `warn - Found lockfile missing swc dependencies, patching...` and update the `package-lock.json`. These are the patched changes. * fix link Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * small backslash fixes * adjust to new style Co-authored-by: Marcus Blättermann <marcus@essenmitsosse.de>
2023-01-11 16:30:07 +00:00
## Assigned Attributes {id="assigned-attributes"}
Predictions will be saved to `Doc.spans[spans_key]` as a
[`SpanGroup`](/api/spangroup). The scores for the spans in the `SpanGroup` will
be saved in `SpanGroup.attrs["scores"]`.
`spans_key` defaults to `"sc"`, but can be passed as a parameter.
| Location | Value |
| -------------------------------------- | -------------------------------------------------------- |
| `Doc.spans[spans_key]` | The annotated spans. ~~SpanGroup~~ |
| `Doc.spans[spans_key].attrs["scores"]` | The score for each span in the `SpanGroup`. ~~Floats1d~~ |
Website migration from Gatsby to Next (#12058) * Rename all MDX file to `.mdx` * Lock current node version (#11885) * Apply Prettier (#11996) * Minor website fixes (#11974) [ci skip] * fix table * Migrate to Next WEB-17 (#12005) * Initial commit * Run `npx create-next-app@13 next-blog` * Install MDX packages Following: https://github.com/vercel/next.js/blob/77b5f79a4dff453abb62346bf75b14d859539b81/packages/next-mdx/readme.md * Add MDX to Next * Allow Next to handle `.md` and `.mdx` files. * Add VSCode extension recommendation * Disabled TypeScript strict mode for now * Add prettier * Apply Prettier to all files * Make sure to use correct Node version * Add basic implementation for `MDXRemote` * Add experimental Rust MDX parser * Add `/public` * Add SASS support * Remove default pages and styling * Convert to module This allows to use `import/export` syntax * Add import for custom components * Add ability to load plugins * Extract function This will make the next commit easier to read * Allow to handle directories for page creation * Refactoring * Allow to parse subfolders for pages * Extract logic * Redirect `index.mdx` to parent directory * Disabled ESLint during builds * Disabled typescript during build * Remove Gatsby from `README.md` * Rephrase Docker part of `README.md` * Update project structure in `README.md` * Move and rename plugins * Update plugin for wrapping sections * Add dependencies for plugin * Use plugin * Rename wrapper type * Simplify unnessary adding of id to sections The slugified section ids are useless, because they can not be referenced anywhere anyway. The navigation only works if the section has the same id as the heading. * Add plugin for custom attributes on Markdown elements * Add plugin to readd support for tables * Add plugin to fix problem with wrapped images For more details see this issue: https://github.com/mdx-js/mdx/issues/1798 * Add necessary meta data to pages * Install necessary dependencies * Remove outdated MDX handling * Remove reliance on `InlineList` * Use existing Remark components * Remove unallowed heading Before `h1` components where not overwritten and would never have worked and they aren't used anywhere either. * Add missing components to MDX * Add correct styling * Fix broken list * Fix broken CSS classes * Implement layout * Fix links * Fix broken images * Fix pattern image * Fix heading attributes * Rename heading attribute `new` was causing some weird issue, so renaming it to `version` * Update comment syntax in MDX * Merge imports * Fix markdown rendering inside components * Add model pages * Simplify anchors * Fix default value for theme * Add Universe index page * Add Universe categories * Add Universe projects * Fix Next problem with copy Next complains when the server renders something different then the client, therfor we move the differing logic to `useEffect` * Fix improper component nesting Next doesn't allow block elements inside a `<p>` * Replace landing page MDX with page component * Remove inlined iframe content * Remove ability to inline HTML content in iFrames * Remove MDX imports * Fix problem with image inside link in MDX * Escape character for MDX * Fix unescaped characters in MDX * Fix headings with logo * Allow to export static HTML pages * Add prebuild script This command is automatically run by Next * Replace `svg-loader` with `react-inlinesvg` `svg-loader` is no longer maintained * Fix ESLint `react-hooks/exhaustive-deps` * Fix dropdowns * Change code language from `cli` to `bash` * Remove unnessary language `none` * Fix invalid code language `markdown_` with an underscore was used to basically turn of syntax highlighting, but using unknown languages know throws an error. * Enable code blocks plugin * Readd `InlineCode` component MDX2 removed the `inlineCode` component > The special component name `inlineCode` was removed, we recommend to use `pre` for the block version of code, and code for both the block and inline versions Source: https://mdxjs.com/migrating/v2/#update-mdx-content * Remove unused code * Extract function to own file * Fix code syntax highlighting * Update syntax for code block meta data * Remove unused prop * Fix internal link recognition There is a problem with regex between Node and browser, and since Next runs the component on both, this create an error. `Prop `rel` did not match. Server: "null" Client: "noopener nofollow noreferrer"` This simplifies the implementation and fixes the above error. * Replace `react-helmet` with `next/head` * Fix `className` problem for JSX component * Fix broken bold markdown * Convert file to `.mjs` to be used by Node process * Add plugin to replace strings * Fix custom table row styling * Fix problem with `span` inside inline `code` React doesn't allow a `span` inside an inline `code` element and throws an error in dev mode. * Add `_document` to be able to customize `<html>` and `<body>` * Add `lang="en"` * Store Netlify settings in file This way we don't need to update via Netlify UI, which can be tricky if changing build settings. * Add sitemap * Add Smartypants * Add PWA support * Add `manifest.webmanifest` * Fix bug with anchor links after reloading There was no need for the previous implementation, since the browser handles this nativly. Additional the manual scrolling into view was actually broken, because the heading would disappear behind the menu bar. * Rename custom event I was googeling for ages to find out what kind of event `inview` is, only to figure out it was a custom event with a name that sounds pretty much like a native one. 🫠 * Fix missing comment syntax highlighting * Refactor Quickstart component The previous implementation was hidding the irrelevant lines via data-props and dynamically generated CSS. This created problems with Next and was also hard to follow. CSS was used to do what React is supposed to handle. The new implementation simplfy filters the list of children (React elements) via their props. * Fix syntax highlighting for Training Quickstart * Unify code rendering * Improve error logging in Juniper * Fix Juniper component * Automatically generate "Read Next" link * Add Plausible * Use recent DocSearch component and adjust styling * Fix images * Turn of image optimization > Image Optimization using Next.js' default loader is not compatible with `next export`. We currently deploy to Netlify via `next export` * Dont build pages starting with `_` * Remove unused files * Add Next plugin to Netlify * Fix button layout MDX automatically adds `p` tags around text on a new line and Prettier wants to put the text on a new line. Hacking with JSX string. * Add 404 page * Apply Prettier * Update Prettier for `package.json` Next sometimes wants to patch `package-lock.json`. The old Prettier setting indended with 4 spaces, but Next always indends with 2 spaces. Since `npm install` automatically uses the indendation from `package.json` for `package-lock.json` and to avoid the format switching back and forth, both files are now set to 2 spaces. * Apply Next patch to `package-lock.json` When starting the dev server Next would warn `warn - Found lockfile missing swc dependencies, patching...` and update the `package-lock.json`. These are the patched changes. * fix link Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * small backslash fixes * adjust to new style Co-authored-by: Marcus Blättermann <marcus@essenmitsosse.de>
2023-01-11 16:30:07 +00:00
## Config and implementation {id="config"}
Add SpanCategorizer component (#6747) * Draft spancat model * Add spancat model * Add test for extract_spans * Add extract_spans layer * Upd extract_spans * Add spancat model * Add test for spancat model * Upd spancat model * Update spancat component * Upd spancat * Update spancat model * Add quick spancat test * Import SpanCategorizer * Fix SpanCategorizer component * Import SpanGroup * Fix span extraction * Fix import * Fix import * Upd model * Update spancat models * Add scoring, update defaults * Update and add docs * Fix type * Update spacy/ml/extract_spans.py * Auto-format and fix import * Fix comment * Fix type * Fix type * Update website/docs/api/spancategorizer.md * Fix comment Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Better defense Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Fix labels list Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/ml/extract_spans.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/pipeline/spancat.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Set annotations during update * Set annotations in spancat * fix imports in test * Update spacy/pipeline/spancat.py * replace MaxoutLogistic with LinearLogistic * fix config * various small fixes * remove set_annotations parameter in update * use our beloved tupley format with recent support for doc.spans * bugfix to allow renaming the default span_key (scores weren't showing up) * use different key in docs example * change defaults to better-working parameters from project (WIP) * register spacy.extract_spans.v1 for legacy purposes * Upd dev version so can build wheel * layers instead of architectures for smaller building blocks * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Include additional scores from overrides in combined score weights * Parameterize spans key in scoring Parameterize the `SpanCategorizer` `spans_key` for scoring purposes so that it's possible to evaluate multiple `spancat` components in the same pipeline. * Use the (intentionally very short) default spans key `sc` in the `SpanCategorizer` * Adjust the default score weights to include the default key * Adjust the scorer to use `spans_{spans_key}` as the prefix for the returned score * Revert addition of `attr_name` argument to `score_spans` and adjust the key in the `getter` instead. Note that for `spancat` components with a custom `span_key`, the score weights currently need to be modified manually in `[training.score_weights]` for them to be available during training. To suppress the default score weights `spans_sc_p/r/f` during training, set them to `null` in `[training.score_weights]`. * Update website/docs/api/scorer.md * Fix scorer for spans key containing underscore * Increment version * Add Spans to Evaluate CLI (#8439) * Add Spans to Evaluate CLI * Change to spans_key * Add spans per_type output Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Fix spancat GPU issues (#8455) * Fix GPU issues * Require thinc >=8.0.6 * Switch to glorot_uniform_init * Fix and test ngram suggester * Include final ngram in doc for all sizes * Fix ngrams for docs of the same length as ngram size * Handle batches of docs that result in no ngrams * Add tests Co-authored-by: Ines Montani <ines@ines.io> Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> Co-authored-by: Nirant <NirantK@users.noreply.github.com>
2021-06-24 10:35:27 +00:00
The default config is defined by the pipeline component factory and describes
how the component should be configured. You can override its settings via the
`config` argument on [`nlp.add_pipe`](/api/language#add_pipe) or in your
[`config.cfg` for training](/usage/training#config). See the
[model architectures](/api/architectures) documentation for details on the
architectures and their arguments and hyperparameters.
Add spancat_singlelabel pipeline for multiclass and non-overlapping span labelling tasks (#11365) * [wip] Update * [wip] Update * Add initial port * [wip] Update * Fix all imports * Add spancat_exclusive to pipeline * [WIP] Update * [ci skip] Add breakpoint for debugging * Use spacy.SpanCategorizer.v1 as default archi * Update spacy/pipeline/spancat_exclusive.py Co-authored-by: kadarakos <kadar.akos@gmail.com> * [ci skip] Small updates * Use Softmax v2 directly from thinc * Cache the label map * Fix mypy errors However, I ignored line 370 because it opened up a bunch of type errors that might be trickier to solve and might lead to a more complicated codebase. * avoid multiplication with 1.0 Co-authored-by: kadarakos <kadar.akos@gmail.com> * Update spacy/pipeline/spancat_exclusive.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update component versions to v2 * Add scorer to docstring * Add _n_labels property to SpanCategorizer Instead of using len(self.labels) in initialize() I am using a private property self._n_labels. This achieves implementation parity and allows me to delete the whole initialize() method for spancat_exclusive (since it's now the same with spancat). * Inherit from SpanCat instead of TrainablePipe This commit changes the inheritance structure of Exclusive_Spancat, now it's inheriting from SpanCategorizer than TrainablePipe. This allows me to remove duplicate methods that are already present in the parent function. * Revert documentation link to spancat * Fix init call for exclusive spancat * Update spacy/pipeline/spancat_exclusive.py Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Import Suggester from spancat * Include zero_init.v1 for spancat * Implement _allow_extra_label to use _n_labels To ensure that spancat / spancat_exclusive cannot be resized after initialization, I inherited the _allow_extra_label() method from spacy/pipeline/trainable_pipe.pyx and used self._n_labels instead of len(self.labels) for checking. I think that changing it locally is a better solution rather than forcing each class that inherits TrainablePipe to use the self._n_labels attribute. Also note that I turned-off black formatting in this block of code because it reads better without the overhang. * Extend existing tests to spancat_exclusive In this commit, I extended the existing tests for spancat to include spancat_exclusive. I parametrized the test functions with 'name' (similar var name with textcat and textcat_multilabel) for each applicable test. TODO: Add overfitting tests for spancat_exclusive * Update documentation for spancat * Turn on formatting for allow_extra_label * Remove initializers in default config * Use DEFAULT_EXCL_SPANCAT_MODEL I also renamed spancat_exclusive_default_config into spancat_excl_default_config because black does some not pretty formatting changes. * Update documentation Update grammar and usage Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Clarify docstring for Exclusive_SpanCategorizer * Remove mypy ignore and typecast labels to list * Fix documentation API * Use a single variable for tests * Update defaults for number of rows Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Put back initializers in spancat config Whenever I remove model.scorer.init_w and model.scorer.init_b, I encounter an error in the test: SystemError: <method '__getitem__' of 'dict' objects> returned a result with an error set. My Thinc version is 8.1.5, but I can't seem to check what's causing the error. * Update spancat_exclusive docstring * Remove init_W and init_B parameters This commit is expected to fail until the new Thinc release. * Require thinc>=8.1.6 for serializable Softmax defaults * Handle zero suggestions to make tests pass I'm not sure if this is the most elegant solution. But what should happen is that the _make_span_group function MUST return an empty SpanGroup if there are no suggestions. The error happens when the 'scores' variable is empty. We cannot get the 'predicted' and other downstream vars. * Better approach for handling zero suggestions * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update spancategorizer headers * Apply suggestions from code review Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Add default value in negative_weight in docs * Add default value in allow_overlap in docs * Update how spancat_exclusive is constructed In this commit, I added the following: - Put the default values of negative_weight and allow_overlap in the default_config dictionary. - Rename make_spancat -> make_exclusive_spancat * Run prettier on spancategorizer.mdx * Change exactly one -> at most one * Add suggester documentation in Exclusive_SpanCategorizer * Add suggester to spancat docstrings * merge multilabel and singlelabel spancat * rename spancat_exclusive to singlelable * wire up different make_spangroups for single and multilabel * black * black * add docstrings * more docstring and fix negative_label * don't rely on default arguments * black * remove spancat exclusive * replace single_label with add_negative_label and adjust inference * mypy * logical bug in configuration check * add spans.attrs[scores] * single label make_spangroup test * bugfix * black * tests for make_span_group with negative labels * refactor make_span_group * black * Update spacy/tests/pipeline/test_spancat.py Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * remove duplicate declaration * Update spacy/pipeline/spancat.py Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * raise error instead of just print * make label mapper private * update docs * run prettier * Update website/docs/api/spancategorizer.mdx Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update website/docs/api/spancategorizer.mdx Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update spacy/pipeline/spancat.py Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update spacy/pipeline/spancat.py Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update spacy/pipeline/spancat.py Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update spacy/pipeline/spancat.py Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * don't keep recomputing self._label_map for each span * typo in docs * Intervals to private and document 'name' param * Update spacy/pipeline/spancat.py Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update spacy/pipeline/spancat.py Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * add Tag to new features * replace tags * revert * revert * revert * revert * Update website/docs/api/spancategorizer.mdx Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update website/docs/api/spancategorizer.mdx Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * prettier * Fix merge * Update website/docs/api/spancategorizer.mdx * remove references to 'single_label' * remove old paragraph * Add spancat_singlelabel to config template * Format * Extend init config tests --------- Co-authored-by: kadarakos <kadar.akos@gmail.com> Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2023-03-09 09:30:59 +00:00
> #### Example (spancat)
Add SpanCategorizer component (#6747) * Draft spancat model * Add spancat model * Add test for extract_spans * Add extract_spans layer * Upd extract_spans * Add spancat model * Add test for spancat model * Upd spancat model * Update spancat component * Upd spancat * Update spancat model * Add quick spancat test * Import SpanCategorizer * Fix SpanCategorizer component * Import SpanGroup * Fix span extraction * Fix import * Fix import * Upd model * Update spancat models * Add scoring, update defaults * Update and add docs * Fix type * Update spacy/ml/extract_spans.py * Auto-format and fix import * Fix comment * Fix type * Fix type * Update website/docs/api/spancategorizer.md * Fix comment Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Better defense Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Fix labels list Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/ml/extract_spans.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/pipeline/spancat.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Set annotations during update * Set annotations in spancat * fix imports in test * Update spacy/pipeline/spancat.py * replace MaxoutLogistic with LinearLogistic * fix config * various small fixes * remove set_annotations parameter in update * use our beloved tupley format with recent support for doc.spans * bugfix to allow renaming the default span_key (scores weren't showing up) * use different key in docs example * change defaults to better-working parameters from project (WIP) * register spacy.extract_spans.v1 for legacy purposes * Upd dev version so can build wheel * layers instead of architectures for smaller building blocks * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Include additional scores from overrides in combined score weights * Parameterize spans key in scoring Parameterize the `SpanCategorizer` `spans_key` for scoring purposes so that it's possible to evaluate multiple `spancat` components in the same pipeline. * Use the (intentionally very short) default spans key `sc` in the `SpanCategorizer` * Adjust the default score weights to include the default key * Adjust the scorer to use `spans_{spans_key}` as the prefix for the returned score * Revert addition of `attr_name` argument to `score_spans` and adjust the key in the `getter` instead. Note that for `spancat` components with a custom `span_key`, the score weights currently need to be modified manually in `[training.score_weights]` for them to be available during training. To suppress the default score weights `spans_sc_p/r/f` during training, set them to `null` in `[training.score_weights]`. * Update website/docs/api/scorer.md * Fix scorer for spans key containing underscore * Increment version * Add Spans to Evaluate CLI (#8439) * Add Spans to Evaluate CLI * Change to spans_key * Add spans per_type output Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Fix spancat GPU issues (#8455) * Fix GPU issues * Require thinc >=8.0.6 * Switch to glorot_uniform_init * Fix and test ngram suggester * Include final ngram in doc for all sizes * Fix ngrams for docs of the same length as ngram size * Handle batches of docs that result in no ngrams * Add tests Co-authored-by: Ines Montani <ines@ines.io> Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> Co-authored-by: Nirant <NirantK@users.noreply.github.com>
2021-06-24 10:35:27 +00:00
>
> ```python
> from spacy.pipeline.spancat import DEFAULT_SPANCAT_MODEL
> config = {
> "threshold": 0.5,
> "spans_key": "labeled_spans",
> "max_positive": None,
> "model": DEFAULT_SPANCAT_MODEL,
> "suggester": {"@misc": "spacy.ngram_suggester.v1", "sizes": [1, 2, 3]},
Add SpanCategorizer component (#6747) * Draft spancat model * Add spancat model * Add test for extract_spans * Add extract_spans layer * Upd extract_spans * Add spancat model * Add test for spancat model * Upd spancat model * Update spancat component * Upd spancat * Update spancat model * Add quick spancat test * Import SpanCategorizer * Fix SpanCategorizer component * Import SpanGroup * Fix span extraction * Fix import * Fix import * Upd model * Update spancat models * Add scoring, update defaults * Update and add docs * Fix type * Update spacy/ml/extract_spans.py * Auto-format and fix import * Fix comment * Fix type * Fix type * Update website/docs/api/spancategorizer.md * Fix comment Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Better defense Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Fix labels list Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/ml/extract_spans.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/pipeline/spancat.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Set annotations during update * Set annotations in spancat * fix imports in test * Update spacy/pipeline/spancat.py * replace MaxoutLogistic with LinearLogistic * fix config * various small fixes * remove set_annotations parameter in update * use our beloved tupley format with recent support for doc.spans * bugfix to allow renaming the default span_key (scores weren't showing up) * use different key in docs example * change defaults to better-working parameters from project (WIP) * register spacy.extract_spans.v1 for legacy purposes * Upd dev version so can build wheel * layers instead of architectures for smaller building blocks * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Include additional scores from overrides in combined score weights * Parameterize spans key in scoring Parameterize the `SpanCategorizer` `spans_key` for scoring purposes so that it's possible to evaluate multiple `spancat` components in the same pipeline. * Use the (intentionally very short) default spans key `sc` in the `SpanCategorizer` * Adjust the default score weights to include the default key * Adjust the scorer to use `spans_{spans_key}` as the prefix for the returned score * Revert addition of `attr_name` argument to `score_spans` and adjust the key in the `getter` instead. Note that for `spancat` components with a custom `span_key`, the score weights currently need to be modified manually in `[training.score_weights]` for them to be available during training. To suppress the default score weights `spans_sc_p/r/f` during training, set them to `null` in `[training.score_weights]`. * Update website/docs/api/scorer.md * Fix scorer for spans key containing underscore * Increment version * Add Spans to Evaluate CLI (#8439) * Add Spans to Evaluate CLI * Change to spans_key * Add spans per_type output Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Fix spancat GPU issues (#8455) * Fix GPU issues * Require thinc >=8.0.6 * Switch to glorot_uniform_init * Fix and test ngram suggester * Include final ngram in doc for all sizes * Fix ngrams for docs of the same length as ngram size * Handle batches of docs that result in no ngrams * Add tests Co-authored-by: Ines Montani <ines@ines.io> Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> Co-authored-by: Nirant <NirantK@users.noreply.github.com>
2021-06-24 10:35:27 +00:00
> }
> nlp.add_pipe("spancat", config=config)
> ```
Add spancat_singlelabel pipeline for multiclass and non-overlapping span labelling tasks (#11365) * [wip] Update * [wip] Update * Add initial port * [wip] Update * Fix all imports * Add spancat_exclusive to pipeline * [WIP] Update * [ci skip] Add breakpoint for debugging * Use spacy.SpanCategorizer.v1 as default archi * Update spacy/pipeline/spancat_exclusive.py Co-authored-by: kadarakos <kadar.akos@gmail.com> * [ci skip] Small updates * Use Softmax v2 directly from thinc * Cache the label map * Fix mypy errors However, I ignored line 370 because it opened up a bunch of type errors that might be trickier to solve and might lead to a more complicated codebase. * avoid multiplication with 1.0 Co-authored-by: kadarakos <kadar.akos@gmail.com> * Update spacy/pipeline/spancat_exclusive.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update component versions to v2 * Add scorer to docstring * Add _n_labels property to SpanCategorizer Instead of using len(self.labels) in initialize() I am using a private property self._n_labels. This achieves implementation parity and allows me to delete the whole initialize() method for spancat_exclusive (since it's now the same with spancat). * Inherit from SpanCat instead of TrainablePipe This commit changes the inheritance structure of Exclusive_Spancat, now it's inheriting from SpanCategorizer than TrainablePipe. This allows me to remove duplicate methods that are already present in the parent function. * Revert documentation link to spancat * Fix init call for exclusive spancat * Update spacy/pipeline/spancat_exclusive.py Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Import Suggester from spancat * Include zero_init.v1 for spancat * Implement _allow_extra_label to use _n_labels To ensure that spancat / spancat_exclusive cannot be resized after initialization, I inherited the _allow_extra_label() method from spacy/pipeline/trainable_pipe.pyx and used self._n_labels instead of len(self.labels) for checking. I think that changing it locally is a better solution rather than forcing each class that inherits TrainablePipe to use the self._n_labels attribute. Also note that I turned-off black formatting in this block of code because it reads better without the overhang. * Extend existing tests to spancat_exclusive In this commit, I extended the existing tests for spancat to include spancat_exclusive. I parametrized the test functions with 'name' (similar var name with textcat and textcat_multilabel) for each applicable test. TODO: Add overfitting tests for spancat_exclusive * Update documentation for spancat * Turn on formatting for allow_extra_label * Remove initializers in default config * Use DEFAULT_EXCL_SPANCAT_MODEL I also renamed spancat_exclusive_default_config into spancat_excl_default_config because black does some not pretty formatting changes. * Update documentation Update grammar and usage Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Clarify docstring for Exclusive_SpanCategorizer * Remove mypy ignore and typecast labels to list * Fix documentation API * Use a single variable for tests * Update defaults for number of rows Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Put back initializers in spancat config Whenever I remove model.scorer.init_w and model.scorer.init_b, I encounter an error in the test: SystemError: <method '__getitem__' of 'dict' objects> returned a result with an error set. My Thinc version is 8.1.5, but I can't seem to check what's causing the error. * Update spancat_exclusive docstring * Remove init_W and init_B parameters This commit is expected to fail until the new Thinc release. * Require thinc>=8.1.6 for serializable Softmax defaults * Handle zero suggestions to make tests pass I'm not sure if this is the most elegant solution. But what should happen is that the _make_span_group function MUST return an empty SpanGroup if there are no suggestions. The error happens when the 'scores' variable is empty. We cannot get the 'predicted' and other downstream vars. * Better approach for handling zero suggestions * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update spancategorizer headers * Apply suggestions from code review Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Add default value in negative_weight in docs * Add default value in allow_overlap in docs * Update how spancat_exclusive is constructed In this commit, I added the following: - Put the default values of negative_weight and allow_overlap in the default_config dictionary. - Rename make_spancat -> make_exclusive_spancat * Run prettier on spancategorizer.mdx * Change exactly one -> at most one * Add suggester documentation in Exclusive_SpanCategorizer * Add suggester to spancat docstrings * merge multilabel and singlelabel spancat * rename spancat_exclusive to singlelable * wire up different make_spangroups for single and multilabel * black * black * add docstrings * more docstring and fix negative_label * don't rely on default arguments * black * remove spancat exclusive * replace single_label with add_negative_label and adjust inference * mypy * logical bug in configuration check * add spans.attrs[scores] * single label make_spangroup test * bugfix * black * tests for make_span_group with negative labels * refactor make_span_group * black * Update spacy/tests/pipeline/test_spancat.py Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * remove duplicate declaration * Update spacy/pipeline/spancat.py Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * raise error instead of just print * make label mapper private * update docs * run prettier * Update website/docs/api/spancategorizer.mdx Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update website/docs/api/spancategorizer.mdx Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update spacy/pipeline/spancat.py Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update spacy/pipeline/spancat.py Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update spacy/pipeline/spancat.py Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update spacy/pipeline/spancat.py Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * don't keep recomputing self._label_map for each span * typo in docs * Intervals to private and document 'name' param * Update spacy/pipeline/spancat.py Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update spacy/pipeline/spancat.py Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * add Tag to new features * replace tags * revert * revert * revert * revert * Update website/docs/api/spancategorizer.mdx Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update website/docs/api/spancategorizer.mdx Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * prettier * Fix merge * Update website/docs/api/spancategorizer.mdx * remove references to 'single_label' * remove old paragraph * Add spancat_singlelabel to config template * Format * Extend init config tests --------- Co-authored-by: kadarakos <kadar.akos@gmail.com> Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2023-03-09 09:30:59 +00:00
> #### Example (spancat_singlelabel)
>
> ```python
> from spacy.pipeline.spancat import DEFAULT_SPANCAT_SINGLELABEL_MODEL
> config = {
> "threshold": 0.5,
> "spans_key": "labeled_spans",
> "model": DEFAULT_SPANCAT_SINGLELABEL_MODEL,
> "suggester": {"@misc": "spacy.ngram_suggester.v1", "sizes": [1, 2, 3]},
> # Additional spancat_singlelabel parameters
> "negative_weight": 0.8,
> "allow_overlap": True,
> }
> nlp.add_pipe("spancat_singlelabel", config=config)
> ```
| Setting | Description |
| --------------------------------------------------- | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| `suggester` | A function that [suggests spans](#suggesters). Spans are returned as a ragged array with two integer columns, for the start and end positions. Defaults to [`ngram_suggester`](#ngram_suggester). ~~Callable[[Iterable[Doc], Optional[Ops]], Ragged]~~ |
| `model` | A model instance that is given a a list of documents and `(start, end)` indices representing candidate span offsets. The model predicts a probability for each category for each span. Defaults to [SpanCategorizer](/api/architectures#SpanCategorizer). ~~Model[Tuple[List[Doc], Ragged], Floats2d]~~ |
| `spans_key` | Key of the [`Doc.spans`](/api/doc#spans) dict to save the spans under. During initialization and training, the component will look for spans on the reference document under the same key. Defaults to `"sc"`. ~~str~~ |
| `threshold` | Minimum probability to consider a prediction positive. Spans with a positive prediction will be saved on the Doc. Meant to be used in combination with the multi-class `spancat` component with a `Logistic` scoring layer. Defaults to `0.5`. ~~float~~ |
| `max_positive` | Maximum number of labels to consider positive per span. Defaults to `None`, indicating no limit. Meant to be used together with the `spancat` component and defaults to 0 with `spancat_singlelabel`. ~~Optional[int]~~ |
| `scorer` | The scoring method. Defaults to [`Scorer.score_spans`](/api/scorer#score_spans) for `Doc.spans[spans_key]` with overlapping spans allowed. ~~Optional[Callable]~~ |
| `add_negative_label` <Tag variant="new">3.5.1</Tag> | Whether to learn to predict a special negative label for each unannotated `Span` . This should be `True` when using a `Softmax` classifier layer and so its `True` by default for `spancat_singlelabel`. Spans with negative labels and their scores are not stored as annotations. ~~bool~~ |
| `negative_weight` <Tag variant="new">3.5.1</Tag> | Multiplier for the loss terms. It can be used to downweight the negative samples if there are too many. It is only used when `add_negative_label` is `True`. Defaults to `1.0`. ~~float~~ |
| `allow_overlap` <Tag variant="new">3.5.1</Tag> | If `True`, the data is assumed to contain overlapping spans. It is only available when `max_positive` is exactly 1. Defaults to `True`. ~~bool~~ |
Add SpanCategorizer component (#6747) * Draft spancat model * Add spancat model * Add test for extract_spans * Add extract_spans layer * Upd extract_spans * Add spancat model * Add test for spancat model * Upd spancat model * Update spancat component * Upd spancat * Update spancat model * Add quick spancat test * Import SpanCategorizer * Fix SpanCategorizer component * Import SpanGroup * Fix span extraction * Fix import * Fix import * Upd model * Update spancat models * Add scoring, update defaults * Update and add docs * Fix type * Update spacy/ml/extract_spans.py * Auto-format and fix import * Fix comment * Fix type * Fix type * Update website/docs/api/spancategorizer.md * Fix comment Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Better defense Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Fix labels list Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/ml/extract_spans.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/pipeline/spancat.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Set annotations during update * Set annotations in spancat * fix imports in test * Update spacy/pipeline/spancat.py * replace MaxoutLogistic with LinearLogistic * fix config * various small fixes * remove set_annotations parameter in update * use our beloved tupley format with recent support for doc.spans * bugfix to allow renaming the default span_key (scores weren't showing up) * use different key in docs example * change defaults to better-working parameters from project (WIP) * register spacy.extract_spans.v1 for legacy purposes * Upd dev version so can build wheel * layers instead of architectures for smaller building blocks * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Include additional scores from overrides in combined score weights * Parameterize spans key in scoring Parameterize the `SpanCategorizer` `spans_key` for scoring purposes so that it's possible to evaluate multiple `spancat` components in the same pipeline. * Use the (intentionally very short) default spans key `sc` in the `SpanCategorizer` * Adjust the default score weights to include the default key * Adjust the scorer to use `spans_{spans_key}` as the prefix for the returned score * Revert addition of `attr_name` argument to `score_spans` and adjust the key in the `getter` instead. Note that for `spancat` components with a custom `span_key`, the score weights currently need to be modified manually in `[training.score_weights]` for them to be available during training. To suppress the default score weights `spans_sc_p/r/f` during training, set them to `null` in `[training.score_weights]`. * Update website/docs/api/scorer.md * Fix scorer for spans key containing underscore * Increment version * Add Spans to Evaluate CLI (#8439) * Add Spans to Evaluate CLI * Change to spans_key * Add spans per_type output Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Fix spancat GPU issues (#8455) * Fix GPU issues * Require thinc >=8.0.6 * Switch to glorot_uniform_init * Fix and test ngram suggester * Include final ngram in doc for all sizes * Fix ngrams for docs of the same length as ngram size * Handle batches of docs that result in no ngrams * Add tests Co-authored-by: Ines Montani <ines@ines.io> Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> Co-authored-by: Nirant <NirantK@users.noreply.github.com>
2021-06-24 10:35:27 +00:00
```python
%%GITHUB_SPACY/spacy/pipeline/spancat.py
```
Website migration from Gatsby to Next (#12058) * Rename all MDX file to `.mdx` * Lock current node version (#11885) * Apply Prettier (#11996) * Minor website fixes (#11974) [ci skip] * fix table * Migrate to Next WEB-17 (#12005) * Initial commit * Run `npx create-next-app@13 next-blog` * Install MDX packages Following: https://github.com/vercel/next.js/blob/77b5f79a4dff453abb62346bf75b14d859539b81/packages/next-mdx/readme.md * Add MDX to Next * Allow Next to handle `.md` and `.mdx` files. * Add VSCode extension recommendation * Disabled TypeScript strict mode for now * Add prettier * Apply Prettier to all files * Make sure to use correct Node version * Add basic implementation for `MDXRemote` * Add experimental Rust MDX parser * Add `/public` * Add SASS support * Remove default pages and styling * Convert to module This allows to use `import/export` syntax * Add import for custom components * Add ability to load plugins * Extract function This will make the next commit easier to read * Allow to handle directories for page creation * Refactoring * Allow to parse subfolders for pages * Extract logic * Redirect `index.mdx` to parent directory * Disabled ESLint during builds * Disabled typescript during build * Remove Gatsby from `README.md` * Rephrase Docker part of `README.md` * Update project structure in `README.md` * Move and rename plugins * Update plugin for wrapping sections * Add dependencies for plugin * Use plugin * Rename wrapper type * Simplify unnessary adding of id to sections The slugified section ids are useless, because they can not be referenced anywhere anyway. The navigation only works if the section has the same id as the heading. * Add plugin for custom attributes on Markdown elements * Add plugin to readd support for tables * Add plugin to fix problem with wrapped images For more details see this issue: https://github.com/mdx-js/mdx/issues/1798 * Add necessary meta data to pages * Install necessary dependencies * Remove outdated MDX handling * Remove reliance on `InlineList` * Use existing Remark components * Remove unallowed heading Before `h1` components where not overwritten and would never have worked and they aren't used anywhere either. * Add missing components to MDX * Add correct styling * Fix broken list * Fix broken CSS classes * Implement layout * Fix links * Fix broken images * Fix pattern image * Fix heading attributes * Rename heading attribute `new` was causing some weird issue, so renaming it to `version` * Update comment syntax in MDX * Merge imports * Fix markdown rendering inside components * Add model pages * Simplify anchors * Fix default value for theme * Add Universe index page * Add Universe categories * Add Universe projects * Fix Next problem with copy Next complains when the server renders something different then the client, therfor we move the differing logic to `useEffect` * Fix improper component nesting Next doesn't allow block elements inside a `<p>` * Replace landing page MDX with page component * Remove inlined iframe content * Remove ability to inline HTML content in iFrames * Remove MDX imports * Fix problem with image inside link in MDX * Escape character for MDX * Fix unescaped characters in MDX * Fix headings with logo * Allow to export static HTML pages * Add prebuild script This command is automatically run by Next * Replace `svg-loader` with `react-inlinesvg` `svg-loader` is no longer maintained * Fix ESLint `react-hooks/exhaustive-deps` * Fix dropdowns * Change code language from `cli` to `bash` * Remove unnessary language `none` * Fix invalid code language `markdown_` with an underscore was used to basically turn of syntax highlighting, but using unknown languages know throws an error. * Enable code blocks plugin * Readd `InlineCode` component MDX2 removed the `inlineCode` component > The special component name `inlineCode` was removed, we recommend to use `pre` for the block version of code, and code for both the block and inline versions Source: https://mdxjs.com/migrating/v2/#update-mdx-content * Remove unused code * Extract function to own file * Fix code syntax highlighting * Update syntax for code block meta data * Remove unused prop * Fix internal link recognition There is a problem with regex between Node and browser, and since Next runs the component on both, this create an error. `Prop `rel` did not match. Server: "null" Client: "noopener nofollow noreferrer"` This simplifies the implementation and fixes the above error. * Replace `react-helmet` with `next/head` * Fix `className` problem for JSX component * Fix broken bold markdown * Convert file to `.mjs` to be used by Node process * Add plugin to replace strings * Fix custom table row styling * Fix problem with `span` inside inline `code` React doesn't allow a `span` inside an inline `code` element and throws an error in dev mode. * Add `_document` to be able to customize `<html>` and `<body>` * Add `lang="en"` * Store Netlify settings in file This way we don't need to update via Netlify UI, which can be tricky if changing build settings. * Add sitemap * Add Smartypants * Add PWA support * Add `manifest.webmanifest` * Fix bug with anchor links after reloading There was no need for the previous implementation, since the browser handles this nativly. Additional the manual scrolling into view was actually broken, because the heading would disappear behind the menu bar. * Rename custom event I was googeling for ages to find out what kind of event `inview` is, only to figure out it was a custom event with a name that sounds pretty much like a native one. 🫠 * Fix missing comment syntax highlighting * Refactor Quickstart component The previous implementation was hidding the irrelevant lines via data-props and dynamically generated CSS. This created problems with Next and was also hard to follow. CSS was used to do what React is supposed to handle. The new implementation simplfy filters the list of children (React elements) via their props. * Fix syntax highlighting for Training Quickstart * Unify code rendering * Improve error logging in Juniper * Fix Juniper component * Automatically generate "Read Next" link * Add Plausible * Use recent DocSearch component and adjust styling * Fix images * Turn of image optimization > Image Optimization using Next.js' default loader is not compatible with `next export`. We currently deploy to Netlify via `next export` * Dont build pages starting with `_` * Remove unused files * Add Next plugin to Netlify * Fix button layout MDX automatically adds `p` tags around text on a new line and Prettier wants to put the text on a new line. Hacking with JSX string. * Add 404 page * Apply Prettier * Update Prettier for `package.json` Next sometimes wants to patch `package-lock.json`. The old Prettier setting indended with 4 spaces, but Next always indends with 2 spaces. Since `npm install` automatically uses the indendation from `package.json` for `package-lock.json` and to avoid the format switching back and forth, both files are now set to 2 spaces. * Apply Next patch to `package-lock.json` When starting the dev server Next would warn `warn - Found lockfile missing swc dependencies, patching...` and update the `package-lock.json`. These are the patched changes. * fix link Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * small backslash fixes * adjust to new style Co-authored-by: Marcus Blättermann <marcus@essenmitsosse.de>
2023-01-11 16:30:07 +00:00
## SpanCategorizer.\_\_init\_\_ {id="init",tag="method"}
Add SpanCategorizer component (#6747) * Draft spancat model * Add spancat model * Add test for extract_spans * Add extract_spans layer * Upd extract_spans * Add spancat model * Add test for spancat model * Upd spancat model * Update spancat component * Upd spancat * Update spancat model * Add quick spancat test * Import SpanCategorizer * Fix SpanCategorizer component * Import SpanGroup * Fix span extraction * Fix import * Fix import * Upd model * Update spancat models * Add scoring, update defaults * Update and add docs * Fix type * Update spacy/ml/extract_spans.py * Auto-format and fix import * Fix comment * Fix type * Fix type * Update website/docs/api/spancategorizer.md * Fix comment Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Better defense Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Fix labels list Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/ml/extract_spans.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/pipeline/spancat.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Set annotations during update * Set annotations in spancat * fix imports in test * Update spacy/pipeline/spancat.py * replace MaxoutLogistic with LinearLogistic * fix config * various small fixes * remove set_annotations parameter in update * use our beloved tupley format with recent support for doc.spans * bugfix to allow renaming the default span_key (scores weren't showing up) * use different key in docs example * change defaults to better-working parameters from project (WIP) * register spacy.extract_spans.v1 for legacy purposes * Upd dev version so can build wheel * layers instead of architectures for smaller building blocks * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Include additional scores from overrides in combined score weights * Parameterize spans key in scoring Parameterize the `SpanCategorizer` `spans_key` for scoring purposes so that it's possible to evaluate multiple `spancat` components in the same pipeline. * Use the (intentionally very short) default spans key `sc` in the `SpanCategorizer` * Adjust the default score weights to include the default key * Adjust the scorer to use `spans_{spans_key}` as the prefix for the returned score * Revert addition of `attr_name` argument to `score_spans` and adjust the key in the `getter` instead. Note that for `spancat` components with a custom `span_key`, the score weights currently need to be modified manually in `[training.score_weights]` for them to be available during training. To suppress the default score weights `spans_sc_p/r/f` during training, set them to `null` in `[training.score_weights]`. * Update website/docs/api/scorer.md * Fix scorer for spans key containing underscore * Increment version * Add Spans to Evaluate CLI (#8439) * Add Spans to Evaluate CLI * Change to spans_key * Add spans per_type output Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Fix spancat GPU issues (#8455) * Fix GPU issues * Require thinc >=8.0.6 * Switch to glorot_uniform_init * Fix and test ngram suggester * Include final ngram in doc for all sizes * Fix ngrams for docs of the same length as ngram size * Handle batches of docs that result in no ngrams * Add tests Co-authored-by: Ines Montani <ines@ines.io> Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> Co-authored-by: Nirant <NirantK@users.noreply.github.com>
2021-06-24 10:35:27 +00:00
> #### Example
>
> ```python
> # Construction via add_pipe with default model
Add spancat_singlelabel pipeline for multiclass and non-overlapping span labelling tasks (#11365) * [wip] Update * [wip] Update * Add initial port * [wip] Update * Fix all imports * Add spancat_exclusive to pipeline * [WIP] Update * [ci skip] Add breakpoint for debugging * Use spacy.SpanCategorizer.v1 as default archi * Update spacy/pipeline/spancat_exclusive.py Co-authored-by: kadarakos <kadar.akos@gmail.com> * [ci skip] Small updates * Use Softmax v2 directly from thinc * Cache the label map * Fix mypy errors However, I ignored line 370 because it opened up a bunch of type errors that might be trickier to solve and might lead to a more complicated codebase. * avoid multiplication with 1.0 Co-authored-by: kadarakos <kadar.akos@gmail.com> * Update spacy/pipeline/spancat_exclusive.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update component versions to v2 * Add scorer to docstring * Add _n_labels property to SpanCategorizer Instead of using len(self.labels) in initialize() I am using a private property self._n_labels. This achieves implementation parity and allows me to delete the whole initialize() method for spancat_exclusive (since it's now the same with spancat). * Inherit from SpanCat instead of TrainablePipe This commit changes the inheritance structure of Exclusive_Spancat, now it's inheriting from SpanCategorizer than TrainablePipe. This allows me to remove duplicate methods that are already present in the parent function. * Revert documentation link to spancat * Fix init call for exclusive spancat * Update spacy/pipeline/spancat_exclusive.py Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Import Suggester from spancat * Include zero_init.v1 for spancat * Implement _allow_extra_label to use _n_labels To ensure that spancat / spancat_exclusive cannot be resized after initialization, I inherited the _allow_extra_label() method from spacy/pipeline/trainable_pipe.pyx and used self._n_labels instead of len(self.labels) for checking. I think that changing it locally is a better solution rather than forcing each class that inherits TrainablePipe to use the self._n_labels attribute. Also note that I turned-off black formatting in this block of code because it reads better without the overhang. * Extend existing tests to spancat_exclusive In this commit, I extended the existing tests for spancat to include spancat_exclusive. I parametrized the test functions with 'name' (similar var name with textcat and textcat_multilabel) for each applicable test. TODO: Add overfitting tests for spancat_exclusive * Update documentation for spancat * Turn on formatting for allow_extra_label * Remove initializers in default config * Use DEFAULT_EXCL_SPANCAT_MODEL I also renamed spancat_exclusive_default_config into spancat_excl_default_config because black does some not pretty formatting changes. * Update documentation Update grammar and usage Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Clarify docstring for Exclusive_SpanCategorizer * Remove mypy ignore and typecast labels to list * Fix documentation API * Use a single variable for tests * Update defaults for number of rows Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Put back initializers in spancat config Whenever I remove model.scorer.init_w and model.scorer.init_b, I encounter an error in the test: SystemError: <method '__getitem__' of 'dict' objects> returned a result with an error set. My Thinc version is 8.1.5, but I can't seem to check what's causing the error. * Update spancat_exclusive docstring * Remove init_W and init_B parameters This commit is expected to fail until the new Thinc release. * Require thinc>=8.1.6 for serializable Softmax defaults * Handle zero suggestions to make tests pass I'm not sure if this is the most elegant solution. But what should happen is that the _make_span_group function MUST return an empty SpanGroup if there are no suggestions. The error happens when the 'scores' variable is empty. We cannot get the 'predicted' and other downstream vars. * Better approach for handling zero suggestions * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update spancategorizer headers * Apply suggestions from code review Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Add default value in negative_weight in docs * Add default value in allow_overlap in docs * Update how spancat_exclusive is constructed In this commit, I added the following: - Put the default values of negative_weight and allow_overlap in the default_config dictionary. - Rename make_spancat -> make_exclusive_spancat * Run prettier on spancategorizer.mdx * Change exactly one -> at most one * Add suggester documentation in Exclusive_SpanCategorizer * Add suggester to spancat docstrings * merge multilabel and singlelabel spancat * rename spancat_exclusive to singlelable * wire up different make_spangroups for single and multilabel * black * black * add docstrings * more docstring and fix negative_label * don't rely on default arguments * black * remove spancat exclusive * replace single_label with add_negative_label and adjust inference * mypy * logical bug in configuration check * add spans.attrs[scores] * single label make_spangroup test * bugfix * black * tests for make_span_group with negative labels * refactor make_span_group * black * Update spacy/tests/pipeline/test_spancat.py Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * remove duplicate declaration * Update spacy/pipeline/spancat.py Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * raise error instead of just print * make label mapper private * update docs * run prettier * Update website/docs/api/spancategorizer.mdx Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update website/docs/api/spancategorizer.mdx Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update spacy/pipeline/spancat.py Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update spacy/pipeline/spancat.py Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update spacy/pipeline/spancat.py Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update spacy/pipeline/spancat.py Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * don't keep recomputing self._label_map for each span * typo in docs * Intervals to private and document 'name' param * Update spacy/pipeline/spancat.py Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update spacy/pipeline/spancat.py Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * add Tag to new features * replace tags * revert * revert * revert * revert * Update website/docs/api/spancategorizer.mdx Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update website/docs/api/spancategorizer.mdx Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * prettier * Fix merge * Update website/docs/api/spancategorizer.mdx * remove references to 'single_label' * remove old paragraph * Add spancat_singlelabel to config template * Format * Extend init config tests --------- Co-authored-by: kadarakos <kadar.akos@gmail.com> Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2023-03-09 09:30:59 +00:00
> # Replace 'spancat' with 'spancat_singlelabel' for exclusive classes
Add SpanCategorizer component (#6747) * Draft spancat model * Add spancat model * Add test for extract_spans * Add extract_spans layer * Upd extract_spans * Add spancat model * Add test for spancat model * Upd spancat model * Update spancat component * Upd spancat * Update spancat model * Add quick spancat test * Import SpanCategorizer * Fix SpanCategorizer component * Import SpanGroup * Fix span extraction * Fix import * Fix import * Upd model * Update spancat models * Add scoring, update defaults * Update and add docs * Fix type * Update spacy/ml/extract_spans.py * Auto-format and fix import * Fix comment * Fix type * Fix type * Update website/docs/api/spancategorizer.md * Fix comment Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Better defense Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Fix labels list Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/ml/extract_spans.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/pipeline/spancat.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Set annotations during update * Set annotations in spancat * fix imports in test * Update spacy/pipeline/spancat.py * replace MaxoutLogistic with LinearLogistic * fix config * various small fixes * remove set_annotations parameter in update * use our beloved tupley format with recent support for doc.spans * bugfix to allow renaming the default span_key (scores weren't showing up) * use different key in docs example * change defaults to better-working parameters from project (WIP) * register spacy.extract_spans.v1 for legacy purposes * Upd dev version so can build wheel * layers instead of architectures for smaller building blocks * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Include additional scores from overrides in combined score weights * Parameterize spans key in scoring Parameterize the `SpanCategorizer` `spans_key` for scoring purposes so that it's possible to evaluate multiple `spancat` components in the same pipeline. * Use the (intentionally very short) default spans key `sc` in the `SpanCategorizer` * Adjust the default score weights to include the default key * Adjust the scorer to use `spans_{spans_key}` as the prefix for the returned score * Revert addition of `attr_name` argument to `score_spans` and adjust the key in the `getter` instead. Note that for `spancat` components with a custom `span_key`, the score weights currently need to be modified manually in `[training.score_weights]` for them to be available during training. To suppress the default score weights `spans_sc_p/r/f` during training, set them to `null` in `[training.score_weights]`. * Update website/docs/api/scorer.md * Fix scorer for spans key containing underscore * Increment version * Add Spans to Evaluate CLI (#8439) * Add Spans to Evaluate CLI * Change to spans_key * Add spans per_type output Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Fix spancat GPU issues (#8455) * Fix GPU issues * Require thinc >=8.0.6 * Switch to glorot_uniform_init * Fix and test ngram suggester * Include final ngram in doc for all sizes * Fix ngrams for docs of the same length as ngram size * Handle batches of docs that result in no ngrams * Add tests Co-authored-by: Ines Montani <ines@ines.io> Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> Co-authored-by: Nirant <NirantK@users.noreply.github.com>
2021-06-24 10:35:27 +00:00
> spancat = nlp.add_pipe("spancat")
>
> # Construction via add_pipe with custom model
> config = {"model": {"@architectures": "my_spancat"}}
> parser = nlp.add_pipe("spancat", config=config)
>
> # Construction from class
> from spacy.pipeline import SpanCategorizer
> spancat = SpanCategorizer(nlp.vocab, model, suggester)
> ```
Create a new pipeline instance. In your application, you would normally use a
shortcut for this and instantiate the component using its string name and
[`nlp.add_pipe`](/api/language#create_pipe).
Add spancat_singlelabel pipeline for multiclass and non-overlapping span labelling tasks (#11365) * [wip] Update * [wip] Update * Add initial port * [wip] Update * Fix all imports * Add spancat_exclusive to pipeline * [WIP] Update * [ci skip] Add breakpoint for debugging * Use spacy.SpanCategorizer.v1 as default archi * Update spacy/pipeline/spancat_exclusive.py Co-authored-by: kadarakos <kadar.akos@gmail.com> * [ci skip] Small updates * Use Softmax v2 directly from thinc * Cache the label map * Fix mypy errors However, I ignored line 370 because it opened up a bunch of type errors that might be trickier to solve and might lead to a more complicated codebase. * avoid multiplication with 1.0 Co-authored-by: kadarakos <kadar.akos@gmail.com> * Update spacy/pipeline/spancat_exclusive.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update component versions to v2 * Add scorer to docstring * Add _n_labels property to SpanCategorizer Instead of using len(self.labels) in initialize() I am using a private property self._n_labels. This achieves implementation parity and allows me to delete the whole initialize() method for spancat_exclusive (since it's now the same with spancat). * Inherit from SpanCat instead of TrainablePipe This commit changes the inheritance structure of Exclusive_Spancat, now it's inheriting from SpanCategorizer than TrainablePipe. This allows me to remove duplicate methods that are already present in the parent function. * Revert documentation link to spancat * Fix init call for exclusive spancat * Update spacy/pipeline/spancat_exclusive.py Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Import Suggester from spancat * Include zero_init.v1 for spancat * Implement _allow_extra_label to use _n_labels To ensure that spancat / spancat_exclusive cannot be resized after initialization, I inherited the _allow_extra_label() method from spacy/pipeline/trainable_pipe.pyx and used self._n_labels instead of len(self.labels) for checking. I think that changing it locally is a better solution rather than forcing each class that inherits TrainablePipe to use the self._n_labels attribute. Also note that I turned-off black formatting in this block of code because it reads better without the overhang. * Extend existing tests to spancat_exclusive In this commit, I extended the existing tests for spancat to include spancat_exclusive. I parametrized the test functions with 'name' (similar var name with textcat and textcat_multilabel) for each applicable test. TODO: Add overfitting tests for spancat_exclusive * Update documentation for spancat * Turn on formatting for allow_extra_label * Remove initializers in default config * Use DEFAULT_EXCL_SPANCAT_MODEL I also renamed spancat_exclusive_default_config into spancat_excl_default_config because black does some not pretty formatting changes. * Update documentation Update grammar and usage Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Clarify docstring for Exclusive_SpanCategorizer * Remove mypy ignore and typecast labels to list * Fix documentation API * Use a single variable for tests * Update defaults for number of rows Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Put back initializers in spancat config Whenever I remove model.scorer.init_w and model.scorer.init_b, I encounter an error in the test: SystemError: <method '__getitem__' of 'dict' objects> returned a result with an error set. My Thinc version is 8.1.5, but I can't seem to check what's causing the error. * Update spancat_exclusive docstring * Remove init_W and init_B parameters This commit is expected to fail until the new Thinc release. * Require thinc>=8.1.6 for serializable Softmax defaults * Handle zero suggestions to make tests pass I'm not sure if this is the most elegant solution. But what should happen is that the _make_span_group function MUST return an empty SpanGroup if there are no suggestions. The error happens when the 'scores' variable is empty. We cannot get the 'predicted' and other downstream vars. * Better approach for handling zero suggestions * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update spancategorizer headers * Apply suggestions from code review Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Add default value in negative_weight in docs * Add default value in allow_overlap in docs * Update how spancat_exclusive is constructed In this commit, I added the following: - Put the default values of negative_weight and allow_overlap in the default_config dictionary. - Rename make_spancat -> make_exclusive_spancat * Run prettier on spancategorizer.mdx * Change exactly one -> at most one * Add suggester documentation in Exclusive_SpanCategorizer * Add suggester to spancat docstrings * merge multilabel and singlelabel spancat * rename spancat_exclusive to singlelable * wire up different make_spangroups for single and multilabel * black * black * add docstrings * more docstring and fix negative_label * don't rely on default arguments * black * remove spancat exclusive * replace single_label with add_negative_label and adjust inference * mypy * logical bug in configuration check * add spans.attrs[scores] * single label make_spangroup test * bugfix * black * tests for make_span_group with negative labels * refactor make_span_group * black * Update spacy/tests/pipeline/test_spancat.py Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * remove duplicate declaration * Update spacy/pipeline/spancat.py Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * raise error instead of just print * make label mapper private * update docs * run prettier * Update website/docs/api/spancategorizer.mdx Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update website/docs/api/spancategorizer.mdx Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update spacy/pipeline/spancat.py Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update spacy/pipeline/spancat.py Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update spacy/pipeline/spancat.py Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update spacy/pipeline/spancat.py Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * don't keep recomputing self._label_map for each span * typo in docs * Intervals to private and document 'name' param * Update spacy/pipeline/spancat.py Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update spacy/pipeline/spancat.py Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * add Tag to new features * replace tags * revert * revert * revert * revert * Update website/docs/api/spancategorizer.mdx Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update website/docs/api/spancategorizer.mdx Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * prettier * Fix merge * Update website/docs/api/spancategorizer.mdx * remove references to 'single_label' * remove old paragraph * Add spancat_singlelabel to config template * Format * Extend init config tests --------- Co-authored-by: kadarakos <kadar.akos@gmail.com> Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2023-03-09 09:30:59 +00:00
| Name | Description |
| --------------------------------------------------- | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| `vocab` | The shared vocabulary. ~~Vocab~~ |
| `model` | A model instance that is given a a list of documents and `(start, end)` indices representing candidate span offsets. The model predicts a probability for each category for each span. ~~Model[Tuple[List[Doc], Ragged], Floats2d]~~ |
| `suggester` | A function that [suggests spans](#suggesters). Spans are returned as a ragged array with two integer columns, for the start and end positions. ~~Callable[[Iterable[Doc], Optional[Ops]], Ragged]~~ |
| `name` | String name of the component instance. Used to add entries to the `losses` during training. ~~str~~ |
| _keyword-only_ | |
| `spans_key` | Key of the [`Doc.spans`](/api/doc#sans) dict to save the spans under. During initialization and training, the component will look for spans on the reference document under the same key. Defaults to `"sc"`. ~~str~~ |
| `threshold` | Minimum probability to consider a prediction positive. Spans with a positive prediction will be saved on the Doc. Defaults to `0.5`. ~~float~~ |
| `max_positive` | Maximum number of labels to consider positive per span. Defaults to `None`, indicating no limit. ~~Optional[int]~~ |
| `allow_overlap` <Tag variant="new">3.5.1</Tag> | If `True`, the data is assumed to contain overlapping spans. It is only available when `max_positive` is exactly 1. Defaults to `True`. ~~bool~~ |
| `add_negative_label` <Tag variant="new">3.5.1</Tag> | Whether to learn to predict a special negative label for each unannotated `Span`. This should be `True` when using a `Softmax` classifier layer and so its `True` by default for `spancat_singlelabel` . Spans with negative labels and their scores are not stored as annotations. ~~bool~~ |
| `negative_weight` <Tag variant="new">3.5.1</Tag> | Multiplier for the loss terms. It can be used to downweight the negative samples if there are too many . It is only used when `add_negative_label` is `True`. Defaults to `1.0`. ~~float~~ |
Add SpanCategorizer component (#6747) * Draft spancat model * Add spancat model * Add test for extract_spans * Add extract_spans layer * Upd extract_spans * Add spancat model * Add test for spancat model * Upd spancat model * Update spancat component * Upd spancat * Update spancat model * Add quick spancat test * Import SpanCategorizer * Fix SpanCategorizer component * Import SpanGroup * Fix span extraction * Fix import * Fix import * Upd model * Update spancat models * Add scoring, update defaults * Update and add docs * Fix type * Update spacy/ml/extract_spans.py * Auto-format and fix import * Fix comment * Fix type * Fix type * Update website/docs/api/spancategorizer.md * Fix comment Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Better defense Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Fix labels list Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/ml/extract_spans.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/pipeline/spancat.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Set annotations during update * Set annotations in spancat * fix imports in test * Update spacy/pipeline/spancat.py * replace MaxoutLogistic with LinearLogistic * fix config * various small fixes * remove set_annotations parameter in update * use our beloved tupley format with recent support for doc.spans * bugfix to allow renaming the default span_key (scores weren't showing up) * use different key in docs example * change defaults to better-working parameters from project (WIP) * register spacy.extract_spans.v1 for legacy purposes * Upd dev version so can build wheel * layers instead of architectures for smaller building blocks * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Include additional scores from overrides in combined score weights * Parameterize spans key in scoring Parameterize the `SpanCategorizer` `spans_key` for scoring purposes so that it's possible to evaluate multiple `spancat` components in the same pipeline. * Use the (intentionally very short) default spans key `sc` in the `SpanCategorizer` * Adjust the default score weights to include the default key * Adjust the scorer to use `spans_{spans_key}` as the prefix for the returned score * Revert addition of `attr_name` argument to `score_spans` and adjust the key in the `getter` instead. Note that for `spancat` components with a custom `span_key`, the score weights currently need to be modified manually in `[training.score_weights]` for them to be available during training. To suppress the default score weights `spans_sc_p/r/f` during training, set them to `null` in `[training.score_weights]`. * Update website/docs/api/scorer.md * Fix scorer for spans key containing underscore * Increment version * Add Spans to Evaluate CLI (#8439) * Add Spans to Evaluate CLI * Change to spans_key * Add spans per_type output Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Fix spancat GPU issues (#8455) * Fix GPU issues * Require thinc >=8.0.6 * Switch to glorot_uniform_init * Fix and test ngram suggester * Include final ngram in doc for all sizes * Fix ngrams for docs of the same length as ngram size * Handle batches of docs that result in no ngrams * Add tests Co-authored-by: Ines Montani <ines@ines.io> Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> Co-authored-by: Nirant <NirantK@users.noreply.github.com>
2021-06-24 10:35:27 +00:00
Website migration from Gatsby to Next (#12058) * Rename all MDX file to `.mdx` * Lock current node version (#11885) * Apply Prettier (#11996) * Minor website fixes (#11974) [ci skip] * fix table * Migrate to Next WEB-17 (#12005) * Initial commit * Run `npx create-next-app@13 next-blog` * Install MDX packages Following: https://github.com/vercel/next.js/blob/77b5f79a4dff453abb62346bf75b14d859539b81/packages/next-mdx/readme.md * Add MDX to Next * Allow Next to handle `.md` and `.mdx` files. * Add VSCode extension recommendation * Disabled TypeScript strict mode for now * Add prettier * Apply Prettier to all files * Make sure to use correct Node version * Add basic implementation for `MDXRemote` * Add experimental Rust MDX parser * Add `/public` * Add SASS support * Remove default pages and styling * Convert to module This allows to use `import/export` syntax * Add import for custom components * Add ability to load plugins * Extract function This will make the next commit easier to read * Allow to handle directories for page creation * Refactoring * Allow to parse subfolders for pages * Extract logic * Redirect `index.mdx` to parent directory * Disabled ESLint during builds * Disabled typescript during build * Remove Gatsby from `README.md` * Rephrase Docker part of `README.md` * Update project structure in `README.md` * Move and rename plugins * Update plugin for wrapping sections * Add dependencies for plugin * Use plugin * Rename wrapper type * Simplify unnessary adding of id to sections The slugified section ids are useless, because they can not be referenced anywhere anyway. The navigation only works if the section has the same id as the heading. * Add plugin for custom attributes on Markdown elements * Add plugin to readd support for tables * Add plugin to fix problem with wrapped images For more details see this issue: https://github.com/mdx-js/mdx/issues/1798 * Add necessary meta data to pages * Install necessary dependencies * Remove outdated MDX handling * Remove reliance on `InlineList` * Use existing Remark components * Remove unallowed heading Before `h1` components where not overwritten and would never have worked and they aren't used anywhere either. * Add missing components to MDX * Add correct styling * Fix broken list * Fix broken CSS classes * Implement layout * Fix links * Fix broken images * Fix pattern image * Fix heading attributes * Rename heading attribute `new` was causing some weird issue, so renaming it to `version` * Update comment syntax in MDX * Merge imports * Fix markdown rendering inside components * Add model pages * Simplify anchors * Fix default value for theme * Add Universe index page * Add Universe categories * Add Universe projects * Fix Next problem with copy Next complains when the server renders something different then the client, therfor we move the differing logic to `useEffect` * Fix improper component nesting Next doesn't allow block elements inside a `<p>` * Replace landing page MDX with page component * Remove inlined iframe content * Remove ability to inline HTML content in iFrames * Remove MDX imports * Fix problem with image inside link in MDX * Escape character for MDX * Fix unescaped characters in MDX * Fix headings with logo * Allow to export static HTML pages * Add prebuild script This command is automatically run by Next * Replace `svg-loader` with `react-inlinesvg` `svg-loader` is no longer maintained * Fix ESLint `react-hooks/exhaustive-deps` * Fix dropdowns * Change code language from `cli` to `bash` * Remove unnessary language `none` * Fix invalid code language `markdown_` with an underscore was used to basically turn of syntax highlighting, but using unknown languages know throws an error. * Enable code blocks plugin * Readd `InlineCode` component MDX2 removed the `inlineCode` component > The special component name `inlineCode` was removed, we recommend to use `pre` for the block version of code, and code for both the block and inline versions Source: https://mdxjs.com/migrating/v2/#update-mdx-content * Remove unused code * Extract function to own file * Fix code syntax highlighting * Update syntax for code block meta data * Remove unused prop * Fix internal link recognition There is a problem with regex between Node and browser, and since Next runs the component on both, this create an error. `Prop `rel` did not match. Server: "null" Client: "noopener nofollow noreferrer"` This simplifies the implementation and fixes the above error. * Replace `react-helmet` with `next/head` * Fix `className` problem for JSX component * Fix broken bold markdown * Convert file to `.mjs` to be used by Node process * Add plugin to replace strings * Fix custom table row styling * Fix problem with `span` inside inline `code` React doesn't allow a `span` inside an inline `code` element and throws an error in dev mode. * Add `_document` to be able to customize `<html>` and `<body>` * Add `lang="en"` * Store Netlify settings in file This way we don't need to update via Netlify UI, which can be tricky if changing build settings. * Add sitemap * Add Smartypants * Add PWA support * Add `manifest.webmanifest` * Fix bug with anchor links after reloading There was no need for the previous implementation, since the browser handles this nativly. Additional the manual scrolling into view was actually broken, because the heading would disappear behind the menu bar. * Rename custom event I was googeling for ages to find out what kind of event `inview` is, only to figure out it was a custom event with a name that sounds pretty much like a native one. 🫠 * Fix missing comment syntax highlighting * Refactor Quickstart component The previous implementation was hidding the irrelevant lines via data-props and dynamically generated CSS. This created problems with Next and was also hard to follow. CSS was used to do what React is supposed to handle. The new implementation simplfy filters the list of children (React elements) via their props. * Fix syntax highlighting for Training Quickstart * Unify code rendering * Improve error logging in Juniper * Fix Juniper component * Automatically generate "Read Next" link * Add Plausible * Use recent DocSearch component and adjust styling * Fix images * Turn of image optimization > Image Optimization using Next.js' default loader is not compatible with `next export`. We currently deploy to Netlify via `next export` * Dont build pages starting with `_` * Remove unused files * Add Next plugin to Netlify * Fix button layout MDX automatically adds `p` tags around text on a new line and Prettier wants to put the text on a new line. Hacking with JSX string. * Add 404 page * Apply Prettier * Update Prettier for `package.json` Next sometimes wants to patch `package-lock.json`. The old Prettier setting indended with 4 spaces, but Next always indends with 2 spaces. Since `npm install` automatically uses the indendation from `package.json` for `package-lock.json` and to avoid the format switching back and forth, both files are now set to 2 spaces. * Apply Next patch to `package-lock.json` When starting the dev server Next would warn `warn - Found lockfile missing swc dependencies, patching...` and update the `package-lock.json`. These are the patched changes. * fix link Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * small backslash fixes * adjust to new style Co-authored-by: Marcus Blättermann <marcus@essenmitsosse.de>
2023-01-11 16:30:07 +00:00
## SpanCategorizer.\_\_call\_\_ {id="call",tag="method"}
Add SpanCategorizer component (#6747) * Draft spancat model * Add spancat model * Add test for extract_spans * Add extract_spans layer * Upd extract_spans * Add spancat model * Add test for spancat model * Upd spancat model * Update spancat component * Upd spancat * Update spancat model * Add quick spancat test * Import SpanCategorizer * Fix SpanCategorizer component * Import SpanGroup * Fix span extraction * Fix import * Fix import * Upd model * Update spancat models * Add scoring, update defaults * Update and add docs * Fix type * Update spacy/ml/extract_spans.py * Auto-format and fix import * Fix comment * Fix type * Fix type * Update website/docs/api/spancategorizer.md * Fix comment Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Better defense Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Fix labels list Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/ml/extract_spans.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/pipeline/spancat.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Set annotations during update * Set annotations in spancat * fix imports in test * Update spacy/pipeline/spancat.py * replace MaxoutLogistic with LinearLogistic * fix config * various small fixes * remove set_annotations parameter in update * use our beloved tupley format with recent support for doc.spans * bugfix to allow renaming the default span_key (scores weren't showing up) * use different key in docs example * change defaults to better-working parameters from project (WIP) * register spacy.extract_spans.v1 for legacy purposes * Upd dev version so can build wheel * layers instead of architectures for smaller building blocks * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Include additional scores from overrides in combined score weights * Parameterize spans key in scoring Parameterize the `SpanCategorizer` `spans_key` for scoring purposes so that it's possible to evaluate multiple `spancat` components in the same pipeline. * Use the (intentionally very short) default spans key `sc` in the `SpanCategorizer` * Adjust the default score weights to include the default key * Adjust the scorer to use `spans_{spans_key}` as the prefix for the returned score * Revert addition of `attr_name` argument to `score_spans` and adjust the key in the `getter` instead. Note that for `spancat` components with a custom `span_key`, the score weights currently need to be modified manually in `[training.score_weights]` for them to be available during training. To suppress the default score weights `spans_sc_p/r/f` during training, set them to `null` in `[training.score_weights]`. * Update website/docs/api/scorer.md * Fix scorer for spans key containing underscore * Increment version * Add Spans to Evaluate CLI (#8439) * Add Spans to Evaluate CLI * Change to spans_key * Add spans per_type output Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Fix spancat GPU issues (#8455) * Fix GPU issues * Require thinc >=8.0.6 * Switch to glorot_uniform_init * Fix and test ngram suggester * Include final ngram in doc for all sizes * Fix ngrams for docs of the same length as ngram size * Handle batches of docs that result in no ngrams * Add tests Co-authored-by: Ines Montani <ines@ines.io> Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> Co-authored-by: Nirant <NirantK@users.noreply.github.com>
2021-06-24 10:35:27 +00:00
Apply the pipe to one document. The document is modified in place, and returned.
This usually happens under the hood when the `nlp` object is called on a text
and all pipeline components are applied to the `Doc` in order. Both
[`__call__`](/api/spancategorizer#call) and [`pipe`](/api/spancategorizer#pipe)
delegate to the [`predict`](/api/spancategorizer#predict) and
[`set_annotations`](/api/spancategorizer#set_annotations) methods.
> #### Example
>
> ```python
> doc = nlp("This is a sentence.")
> spancat = nlp.add_pipe("spancat")
> # This usually happens under the hood
> processed = spancat(doc)
> ```
| Name | Description |
| ----------- | -------------------------------- |
| `doc` | The document to process. ~~Doc~~ |
| **RETURNS** | The processed document. ~~Doc~~ |
Website migration from Gatsby to Next (#12058) * Rename all MDX file to `.mdx` * Lock current node version (#11885) * Apply Prettier (#11996) * Minor website fixes (#11974) [ci skip] * fix table * Migrate to Next WEB-17 (#12005) * Initial commit * Run `npx create-next-app@13 next-blog` * Install MDX packages Following: https://github.com/vercel/next.js/blob/77b5f79a4dff453abb62346bf75b14d859539b81/packages/next-mdx/readme.md * Add MDX to Next * Allow Next to handle `.md` and `.mdx` files. * Add VSCode extension recommendation * Disabled TypeScript strict mode for now * Add prettier * Apply Prettier to all files * Make sure to use correct Node version * Add basic implementation for `MDXRemote` * Add experimental Rust MDX parser * Add `/public` * Add SASS support * Remove default pages and styling * Convert to module This allows to use `import/export` syntax * Add import for custom components * Add ability to load plugins * Extract function This will make the next commit easier to read * Allow to handle directories for page creation * Refactoring * Allow to parse subfolders for pages * Extract logic * Redirect `index.mdx` to parent directory * Disabled ESLint during builds * Disabled typescript during build * Remove Gatsby from `README.md` * Rephrase Docker part of `README.md` * Update project structure in `README.md` * Move and rename plugins * Update plugin for wrapping sections * Add dependencies for plugin * Use plugin * Rename wrapper type * Simplify unnessary adding of id to sections The slugified section ids are useless, because they can not be referenced anywhere anyway. The navigation only works if the section has the same id as the heading. * Add plugin for custom attributes on Markdown elements * Add plugin to readd support for tables * Add plugin to fix problem with wrapped images For more details see this issue: https://github.com/mdx-js/mdx/issues/1798 * Add necessary meta data to pages * Install necessary dependencies * Remove outdated MDX handling * Remove reliance on `InlineList` * Use existing Remark components * Remove unallowed heading Before `h1` components where not overwritten and would never have worked and they aren't used anywhere either. * Add missing components to MDX * Add correct styling * Fix broken list * Fix broken CSS classes * Implement layout * Fix links * Fix broken images * Fix pattern image * Fix heading attributes * Rename heading attribute `new` was causing some weird issue, so renaming it to `version` * Update comment syntax in MDX * Merge imports * Fix markdown rendering inside components * Add model pages * Simplify anchors * Fix default value for theme * Add Universe index page * Add Universe categories * Add Universe projects * Fix Next problem with copy Next complains when the server renders something different then the client, therfor we move the differing logic to `useEffect` * Fix improper component nesting Next doesn't allow block elements inside a `<p>` * Replace landing page MDX with page component * Remove inlined iframe content * Remove ability to inline HTML content in iFrames * Remove MDX imports * Fix problem with image inside link in MDX * Escape character for MDX * Fix unescaped characters in MDX * Fix headings with logo * Allow to export static HTML pages * Add prebuild script This command is automatically run by Next * Replace `svg-loader` with `react-inlinesvg` `svg-loader` is no longer maintained * Fix ESLint `react-hooks/exhaustive-deps` * Fix dropdowns * Change code language from `cli` to `bash` * Remove unnessary language `none` * Fix invalid code language `markdown_` with an underscore was used to basically turn of syntax highlighting, but using unknown languages know throws an error. * Enable code blocks plugin * Readd `InlineCode` component MDX2 removed the `inlineCode` component > The special component name `inlineCode` was removed, we recommend to use `pre` for the block version of code, and code for both the block and inline versions Source: https://mdxjs.com/migrating/v2/#update-mdx-content * Remove unused code * Extract function to own file * Fix code syntax highlighting * Update syntax for code block meta data * Remove unused prop * Fix internal link recognition There is a problem with regex between Node and browser, and since Next runs the component on both, this create an error. `Prop `rel` did not match. Server: "null" Client: "noopener nofollow noreferrer"` This simplifies the implementation and fixes the above error. * Replace `react-helmet` with `next/head` * Fix `className` problem for JSX component * Fix broken bold markdown * Convert file to `.mjs` to be used by Node process * Add plugin to replace strings * Fix custom table row styling * Fix problem with `span` inside inline `code` React doesn't allow a `span` inside an inline `code` element and throws an error in dev mode. * Add `_document` to be able to customize `<html>` and `<body>` * Add `lang="en"` * Store Netlify settings in file This way we don't need to update via Netlify UI, which can be tricky if changing build settings. * Add sitemap * Add Smartypants * Add PWA support * Add `manifest.webmanifest` * Fix bug with anchor links after reloading There was no need for the previous implementation, since the browser handles this nativly. Additional the manual scrolling into view was actually broken, because the heading would disappear behind the menu bar. * Rename custom event I was googeling for ages to find out what kind of event `inview` is, only to figure out it was a custom event with a name that sounds pretty much like a native one. 🫠 * Fix missing comment syntax highlighting * Refactor Quickstart component The previous implementation was hidding the irrelevant lines via data-props and dynamically generated CSS. This created problems with Next and was also hard to follow. CSS was used to do what React is supposed to handle. The new implementation simplfy filters the list of children (React elements) via their props. * Fix syntax highlighting for Training Quickstart * Unify code rendering * Improve error logging in Juniper * Fix Juniper component * Automatically generate "Read Next" link * Add Plausible * Use recent DocSearch component and adjust styling * Fix images * Turn of image optimization > Image Optimization using Next.js' default loader is not compatible with `next export`. We currently deploy to Netlify via `next export` * Dont build pages starting with `_` * Remove unused files * Add Next plugin to Netlify * Fix button layout MDX automatically adds `p` tags around text on a new line and Prettier wants to put the text on a new line. Hacking with JSX string. * Add 404 page * Apply Prettier * Update Prettier for `package.json` Next sometimes wants to patch `package-lock.json`. The old Prettier setting indended with 4 spaces, but Next always indends with 2 spaces. Since `npm install` automatically uses the indendation from `package.json` for `package-lock.json` and to avoid the format switching back and forth, both files are now set to 2 spaces. * Apply Next patch to `package-lock.json` When starting the dev server Next would warn `warn - Found lockfile missing swc dependencies, patching...` and update the `package-lock.json`. These are the patched changes. * fix link Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * small backslash fixes * adjust to new style Co-authored-by: Marcus Blättermann <marcus@essenmitsosse.de>
2023-01-11 16:30:07 +00:00
## SpanCategorizer.pipe {id="pipe",tag="method"}
Add SpanCategorizer component (#6747) * Draft spancat model * Add spancat model * Add test for extract_spans * Add extract_spans layer * Upd extract_spans * Add spancat model * Add test for spancat model * Upd spancat model * Update spancat component * Upd spancat * Update spancat model * Add quick spancat test * Import SpanCategorizer * Fix SpanCategorizer component * Import SpanGroup * Fix span extraction * Fix import * Fix import * Upd model * Update spancat models * Add scoring, update defaults * Update and add docs * Fix type * Update spacy/ml/extract_spans.py * Auto-format and fix import * Fix comment * Fix type * Fix type * Update website/docs/api/spancategorizer.md * Fix comment Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Better defense Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Fix labels list Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/ml/extract_spans.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/pipeline/spancat.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Set annotations during update * Set annotations in spancat * fix imports in test * Update spacy/pipeline/spancat.py * replace MaxoutLogistic with LinearLogistic * fix config * various small fixes * remove set_annotations parameter in update * use our beloved tupley format with recent support for doc.spans * bugfix to allow renaming the default span_key (scores weren't showing up) * use different key in docs example * change defaults to better-working parameters from project (WIP) * register spacy.extract_spans.v1 for legacy purposes * Upd dev version so can build wheel * layers instead of architectures for smaller building blocks * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Include additional scores from overrides in combined score weights * Parameterize spans key in scoring Parameterize the `SpanCategorizer` `spans_key` for scoring purposes so that it's possible to evaluate multiple `spancat` components in the same pipeline. * Use the (intentionally very short) default spans key `sc` in the `SpanCategorizer` * Adjust the default score weights to include the default key * Adjust the scorer to use `spans_{spans_key}` as the prefix for the returned score * Revert addition of `attr_name` argument to `score_spans` and adjust the key in the `getter` instead. Note that for `spancat` components with a custom `span_key`, the score weights currently need to be modified manually in `[training.score_weights]` for them to be available during training. To suppress the default score weights `spans_sc_p/r/f` during training, set them to `null` in `[training.score_weights]`. * Update website/docs/api/scorer.md * Fix scorer for spans key containing underscore * Increment version * Add Spans to Evaluate CLI (#8439) * Add Spans to Evaluate CLI * Change to spans_key * Add spans per_type output Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Fix spancat GPU issues (#8455) * Fix GPU issues * Require thinc >=8.0.6 * Switch to glorot_uniform_init * Fix and test ngram suggester * Include final ngram in doc for all sizes * Fix ngrams for docs of the same length as ngram size * Handle batches of docs that result in no ngrams * Add tests Co-authored-by: Ines Montani <ines@ines.io> Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> Co-authored-by: Nirant <NirantK@users.noreply.github.com>
2021-06-24 10:35:27 +00:00
Apply the pipe to a stream of documents. This usually happens under the hood
when the `nlp` object is called on a text and all pipeline components are
applied to the `Doc` in order. Both [`__call__`](/api/spancategorizer#call) and
[`pipe`](/api/spancategorizer#pipe) delegate to the
[`predict`](/api/spancategorizer#predict) and
[`set_annotations`](/api/spancategorizer#set_annotations) methods.
> #### Example
>
> ```python
> spancat = nlp.add_pipe("spancat")
> for doc in spancat.pipe(docs, batch_size=50):
> pass
> ```
| Name | Description |
| -------------- | ------------------------------------------------------------- |
| `stream` | A stream of documents. ~~Iterable[Doc]~~ |
| _keyword-only_ | |
| `batch_size` | The number of documents to buffer. Defaults to `128`. ~~int~~ |
| **YIELDS** | The processed documents in order. ~~Doc~~ |
Website migration from Gatsby to Next (#12058) * Rename all MDX file to `.mdx` * Lock current node version (#11885) * Apply Prettier (#11996) * Minor website fixes (#11974) [ci skip] * fix table * Migrate to Next WEB-17 (#12005) * Initial commit * Run `npx create-next-app@13 next-blog` * Install MDX packages Following: https://github.com/vercel/next.js/blob/77b5f79a4dff453abb62346bf75b14d859539b81/packages/next-mdx/readme.md * Add MDX to Next * Allow Next to handle `.md` and `.mdx` files. * Add VSCode extension recommendation * Disabled TypeScript strict mode for now * Add prettier * Apply Prettier to all files * Make sure to use correct Node version * Add basic implementation for `MDXRemote` * Add experimental Rust MDX parser * Add `/public` * Add SASS support * Remove default pages and styling * Convert to module This allows to use `import/export` syntax * Add import for custom components * Add ability to load plugins * Extract function This will make the next commit easier to read * Allow to handle directories for page creation * Refactoring * Allow to parse subfolders for pages * Extract logic * Redirect `index.mdx` to parent directory * Disabled ESLint during builds * Disabled typescript during build * Remove Gatsby from `README.md` * Rephrase Docker part of `README.md` * Update project structure in `README.md` * Move and rename plugins * Update plugin for wrapping sections * Add dependencies for plugin * Use plugin * Rename wrapper type * Simplify unnessary adding of id to sections The slugified section ids are useless, because they can not be referenced anywhere anyway. The navigation only works if the section has the same id as the heading. * Add plugin for custom attributes on Markdown elements * Add plugin to readd support for tables * Add plugin to fix problem with wrapped images For more details see this issue: https://github.com/mdx-js/mdx/issues/1798 * Add necessary meta data to pages * Install necessary dependencies * Remove outdated MDX handling * Remove reliance on `InlineList` * Use existing Remark components * Remove unallowed heading Before `h1` components where not overwritten and would never have worked and they aren't used anywhere either. * Add missing components to MDX * Add correct styling * Fix broken list * Fix broken CSS classes * Implement layout * Fix links * Fix broken images * Fix pattern image * Fix heading attributes * Rename heading attribute `new` was causing some weird issue, so renaming it to `version` * Update comment syntax in MDX * Merge imports * Fix markdown rendering inside components * Add model pages * Simplify anchors * Fix default value for theme * Add Universe index page * Add Universe categories * Add Universe projects * Fix Next problem with copy Next complains when the server renders something different then the client, therfor we move the differing logic to `useEffect` * Fix improper component nesting Next doesn't allow block elements inside a `<p>` * Replace landing page MDX with page component * Remove inlined iframe content * Remove ability to inline HTML content in iFrames * Remove MDX imports * Fix problem with image inside link in MDX * Escape character for MDX * Fix unescaped characters in MDX * Fix headings with logo * Allow to export static HTML pages * Add prebuild script This command is automatically run by Next * Replace `svg-loader` with `react-inlinesvg` `svg-loader` is no longer maintained * Fix ESLint `react-hooks/exhaustive-deps` * Fix dropdowns * Change code language from `cli` to `bash` * Remove unnessary language `none` * Fix invalid code language `markdown_` with an underscore was used to basically turn of syntax highlighting, but using unknown languages know throws an error. * Enable code blocks plugin * Readd `InlineCode` component MDX2 removed the `inlineCode` component > The special component name `inlineCode` was removed, we recommend to use `pre` for the block version of code, and code for both the block and inline versions Source: https://mdxjs.com/migrating/v2/#update-mdx-content * Remove unused code * Extract function to own file * Fix code syntax highlighting * Update syntax for code block meta data * Remove unused prop * Fix internal link recognition There is a problem with regex between Node and browser, and since Next runs the component on both, this create an error. `Prop `rel` did not match. Server: "null" Client: "noopener nofollow noreferrer"` This simplifies the implementation and fixes the above error. * Replace `react-helmet` with `next/head` * Fix `className` problem for JSX component * Fix broken bold markdown * Convert file to `.mjs` to be used by Node process * Add plugin to replace strings * Fix custom table row styling * Fix problem with `span` inside inline `code` React doesn't allow a `span` inside an inline `code` element and throws an error in dev mode. * Add `_document` to be able to customize `<html>` and `<body>` * Add `lang="en"` * Store Netlify settings in file This way we don't need to update via Netlify UI, which can be tricky if changing build settings. * Add sitemap * Add Smartypants * Add PWA support * Add `manifest.webmanifest` * Fix bug with anchor links after reloading There was no need for the previous implementation, since the browser handles this nativly. Additional the manual scrolling into view was actually broken, because the heading would disappear behind the menu bar. * Rename custom event I was googeling for ages to find out what kind of event `inview` is, only to figure out it was a custom event with a name that sounds pretty much like a native one. 🫠 * Fix missing comment syntax highlighting * Refactor Quickstart component The previous implementation was hidding the irrelevant lines via data-props and dynamically generated CSS. This created problems with Next and was also hard to follow. CSS was used to do what React is supposed to handle. The new implementation simplfy filters the list of children (React elements) via their props. * Fix syntax highlighting for Training Quickstart * Unify code rendering * Improve error logging in Juniper * Fix Juniper component * Automatically generate "Read Next" link * Add Plausible * Use recent DocSearch component and adjust styling * Fix images * Turn of image optimization > Image Optimization using Next.js' default loader is not compatible with `next export`. We currently deploy to Netlify via `next export` * Dont build pages starting with `_` * Remove unused files * Add Next plugin to Netlify * Fix button layout MDX automatically adds `p` tags around text on a new line and Prettier wants to put the text on a new line. Hacking with JSX string. * Add 404 page * Apply Prettier * Update Prettier for `package.json` Next sometimes wants to patch `package-lock.json`. The old Prettier setting indended with 4 spaces, but Next always indends with 2 spaces. Since `npm install` automatically uses the indendation from `package.json` for `package-lock.json` and to avoid the format switching back and forth, both files are now set to 2 spaces. * Apply Next patch to `package-lock.json` When starting the dev server Next would warn `warn - Found lockfile missing swc dependencies, patching...` and update the `package-lock.json`. These are the patched changes. * fix link Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * small backslash fixes * adjust to new style Co-authored-by: Marcus Blättermann <marcus@essenmitsosse.de>
2023-01-11 16:30:07 +00:00
## SpanCategorizer.initialize {id="initialize",tag="method"}
Add SpanCategorizer component (#6747) * Draft spancat model * Add spancat model * Add test for extract_spans * Add extract_spans layer * Upd extract_spans * Add spancat model * Add test for spancat model * Upd spancat model * Update spancat component * Upd spancat * Update spancat model * Add quick spancat test * Import SpanCategorizer * Fix SpanCategorizer component * Import SpanGroup * Fix span extraction * Fix import * Fix import * Upd model * Update spancat models * Add scoring, update defaults * Update and add docs * Fix type * Update spacy/ml/extract_spans.py * Auto-format and fix import * Fix comment * Fix type * Fix type * Update website/docs/api/spancategorizer.md * Fix comment Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Better defense Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Fix labels list Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/ml/extract_spans.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/pipeline/spancat.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Set annotations during update * Set annotations in spancat * fix imports in test * Update spacy/pipeline/spancat.py * replace MaxoutLogistic with LinearLogistic * fix config * various small fixes * remove set_annotations parameter in update * use our beloved tupley format with recent support for doc.spans * bugfix to allow renaming the default span_key (scores weren't showing up) * use different key in docs example * change defaults to better-working parameters from project (WIP) * register spacy.extract_spans.v1 for legacy purposes * Upd dev version so can build wheel * layers instead of architectures for smaller building blocks * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Include additional scores from overrides in combined score weights * Parameterize spans key in scoring Parameterize the `SpanCategorizer` `spans_key` for scoring purposes so that it's possible to evaluate multiple `spancat` components in the same pipeline. * Use the (intentionally very short) default spans key `sc` in the `SpanCategorizer` * Adjust the default score weights to include the default key * Adjust the scorer to use `spans_{spans_key}` as the prefix for the returned score * Revert addition of `attr_name` argument to `score_spans` and adjust the key in the `getter` instead. Note that for `spancat` components with a custom `span_key`, the score weights currently need to be modified manually in `[training.score_weights]` for them to be available during training. To suppress the default score weights `spans_sc_p/r/f` during training, set them to `null` in `[training.score_weights]`. * Update website/docs/api/scorer.md * Fix scorer for spans key containing underscore * Increment version * Add Spans to Evaluate CLI (#8439) * Add Spans to Evaluate CLI * Change to spans_key * Add spans per_type output Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Fix spancat GPU issues (#8455) * Fix GPU issues * Require thinc >=8.0.6 * Switch to glorot_uniform_init * Fix and test ngram suggester * Include final ngram in doc for all sizes * Fix ngrams for docs of the same length as ngram size * Handle batches of docs that result in no ngrams * Add tests Co-authored-by: Ines Montani <ines@ines.io> Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> Co-authored-by: Nirant <NirantK@users.noreply.github.com>
2021-06-24 10:35:27 +00:00
Initialize the component for training. `get_examples` should be a function that
returns an iterable of [`Example`](/api/example) objects. **At least one example
should be supplied.** The data examples are used to **initialize the model** of
the component and can either be the full training data or a representative
sample. Initialization includes validating the network,
Add SpanCategorizer component (#6747) * Draft spancat model * Add spancat model * Add test for extract_spans * Add extract_spans layer * Upd extract_spans * Add spancat model * Add test for spancat model * Upd spancat model * Update spancat component * Upd spancat * Update spancat model * Add quick spancat test * Import SpanCategorizer * Fix SpanCategorizer component * Import SpanGroup * Fix span extraction * Fix import * Fix import * Upd model * Update spancat models * Add scoring, update defaults * Update and add docs * Fix type * Update spacy/ml/extract_spans.py * Auto-format and fix import * Fix comment * Fix type * Fix type * Update website/docs/api/spancategorizer.md * Fix comment Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Better defense Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Fix labels list Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/ml/extract_spans.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/pipeline/spancat.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Set annotations during update * Set annotations in spancat * fix imports in test * Update spacy/pipeline/spancat.py * replace MaxoutLogistic with LinearLogistic * fix config * various small fixes * remove set_annotations parameter in update * use our beloved tupley format with recent support for doc.spans * bugfix to allow renaming the default span_key (scores weren't showing up) * use different key in docs example * change defaults to better-working parameters from project (WIP) * register spacy.extract_spans.v1 for legacy purposes * Upd dev version so can build wheel * layers instead of architectures for smaller building blocks * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Include additional scores from overrides in combined score weights * Parameterize spans key in scoring Parameterize the `SpanCategorizer` `spans_key` for scoring purposes so that it's possible to evaluate multiple `spancat` components in the same pipeline. * Use the (intentionally very short) default spans key `sc` in the `SpanCategorizer` * Adjust the default score weights to include the default key * Adjust the scorer to use `spans_{spans_key}` as the prefix for the returned score * Revert addition of `attr_name` argument to `score_spans` and adjust the key in the `getter` instead. Note that for `spancat` components with a custom `span_key`, the score weights currently need to be modified manually in `[training.score_weights]` for them to be available during training. To suppress the default score weights `spans_sc_p/r/f` during training, set them to `null` in `[training.score_weights]`. * Update website/docs/api/scorer.md * Fix scorer for spans key containing underscore * Increment version * Add Spans to Evaluate CLI (#8439) * Add Spans to Evaluate CLI * Change to spans_key * Add spans per_type output Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Fix spancat GPU issues (#8455) * Fix GPU issues * Require thinc >=8.0.6 * Switch to glorot_uniform_init * Fix and test ngram suggester * Include final ngram in doc for all sizes * Fix ngrams for docs of the same length as ngram size * Handle batches of docs that result in no ngrams * Add tests Co-authored-by: Ines Montani <ines@ines.io> Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> Co-authored-by: Nirant <NirantK@users.noreply.github.com>
2021-06-24 10:35:27 +00:00
[inferring missing shapes](https://thinc.ai/docs/usage-models#validation) and
setting up the label scheme based on the data. This method is typically called
by [`Language.initialize`](/api/language#initialize) and lets you customize
arguments it receives via the
[`[initialize.components]`](/api/data-formats#config-initialize) block in the
config.
> #### Example
>
> ```python
> spancat = nlp.add_pipe("spancat")
> spancat.initialize(lambda: examples, nlp=nlp)
Add SpanCategorizer component (#6747) * Draft spancat model * Add spancat model * Add test for extract_spans * Add extract_spans layer * Upd extract_spans * Add spancat model * Add test for spancat model * Upd spancat model * Update spancat component * Upd spancat * Update spancat model * Add quick spancat test * Import SpanCategorizer * Fix SpanCategorizer component * Import SpanGroup * Fix span extraction * Fix import * Fix import * Upd model * Update spancat models * Add scoring, update defaults * Update and add docs * Fix type * Update spacy/ml/extract_spans.py * Auto-format and fix import * Fix comment * Fix type * Fix type * Update website/docs/api/spancategorizer.md * Fix comment Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Better defense Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Fix labels list Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/ml/extract_spans.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/pipeline/spancat.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Set annotations during update * Set annotations in spancat * fix imports in test * Update spacy/pipeline/spancat.py * replace MaxoutLogistic with LinearLogistic * fix config * various small fixes * remove set_annotations parameter in update * use our beloved tupley format with recent support for doc.spans * bugfix to allow renaming the default span_key (scores weren't showing up) * use different key in docs example * change defaults to better-working parameters from project (WIP) * register spacy.extract_spans.v1 for legacy purposes * Upd dev version so can build wheel * layers instead of architectures for smaller building blocks * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Include additional scores from overrides in combined score weights * Parameterize spans key in scoring Parameterize the `SpanCategorizer` `spans_key` for scoring purposes so that it's possible to evaluate multiple `spancat` components in the same pipeline. * Use the (intentionally very short) default spans key `sc` in the `SpanCategorizer` * Adjust the default score weights to include the default key * Adjust the scorer to use `spans_{spans_key}` as the prefix for the returned score * Revert addition of `attr_name` argument to `score_spans` and adjust the key in the `getter` instead. Note that for `spancat` components with a custom `span_key`, the score weights currently need to be modified manually in `[training.score_weights]` for them to be available during training. To suppress the default score weights `spans_sc_p/r/f` during training, set them to `null` in `[training.score_weights]`. * Update website/docs/api/scorer.md * Fix scorer for spans key containing underscore * Increment version * Add Spans to Evaluate CLI (#8439) * Add Spans to Evaluate CLI * Change to spans_key * Add spans per_type output Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Fix spancat GPU issues (#8455) * Fix GPU issues * Require thinc >=8.0.6 * Switch to glorot_uniform_init * Fix and test ngram suggester * Include final ngram in doc for all sizes * Fix ngrams for docs of the same length as ngram size * Handle batches of docs that result in no ngrams * Add tests Co-authored-by: Ines Montani <ines@ines.io> Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> Co-authored-by: Nirant <NirantK@users.noreply.github.com>
2021-06-24 10:35:27 +00:00
> ```
>
> ```ini
> ### config.cfg
> [initialize.components.spancat]
>
> [initialize.components.spancat.labels]
> @readers = "spacy.read_labels.v1"
> path = "corpus/labels/spancat.json
> ```
| Name | Description |
| -------------- | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| `get_examples` | Function that returns gold-standard annotations in the form of [`Example`](/api/example) objects. Must contain at least one `Example`. ~~Callable[[], Iterable[Example]]~~ |
Add SpanCategorizer component (#6747) * Draft spancat model * Add spancat model * Add test for extract_spans * Add extract_spans layer * Upd extract_spans * Add spancat model * Add test for spancat model * Upd spancat model * Update spancat component * Upd spancat * Update spancat model * Add quick spancat test * Import SpanCategorizer * Fix SpanCategorizer component * Import SpanGroup * Fix span extraction * Fix import * Fix import * Upd model * Update spancat models * Add scoring, update defaults * Update and add docs * Fix type * Update spacy/ml/extract_spans.py * Auto-format and fix import * Fix comment * Fix type * Fix type * Update website/docs/api/spancategorizer.md * Fix comment Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Better defense Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Fix labels list Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/ml/extract_spans.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/pipeline/spancat.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Set annotations during update * Set annotations in spancat * fix imports in test * Update spacy/pipeline/spancat.py * replace MaxoutLogistic with LinearLogistic * fix config * various small fixes * remove set_annotations parameter in update * use our beloved tupley format with recent support for doc.spans * bugfix to allow renaming the default span_key (scores weren't showing up) * use different key in docs example * change defaults to better-working parameters from project (WIP) * register spacy.extract_spans.v1 for legacy purposes * Upd dev version so can build wheel * layers instead of architectures for smaller building blocks * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Include additional scores from overrides in combined score weights * Parameterize spans key in scoring Parameterize the `SpanCategorizer` `spans_key` for scoring purposes so that it's possible to evaluate multiple `spancat` components in the same pipeline. * Use the (intentionally very short) default spans key `sc` in the `SpanCategorizer` * Adjust the default score weights to include the default key * Adjust the scorer to use `spans_{spans_key}` as the prefix for the returned score * Revert addition of `attr_name` argument to `score_spans` and adjust the key in the `getter` instead. Note that for `spancat` components with a custom `span_key`, the score weights currently need to be modified manually in `[training.score_weights]` for them to be available during training. To suppress the default score weights `spans_sc_p/r/f` during training, set them to `null` in `[training.score_weights]`. * Update website/docs/api/scorer.md * Fix scorer for spans key containing underscore * Increment version * Add Spans to Evaluate CLI (#8439) * Add Spans to Evaluate CLI * Change to spans_key * Add spans per_type output Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Fix spancat GPU issues (#8455) * Fix GPU issues * Require thinc >=8.0.6 * Switch to glorot_uniform_init * Fix and test ngram suggester * Include final ngram in doc for all sizes * Fix ngrams for docs of the same length as ngram size * Handle batches of docs that result in no ngrams * Add tests Co-authored-by: Ines Montani <ines@ines.io> Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> Co-authored-by: Nirant <NirantK@users.noreply.github.com>
2021-06-24 10:35:27 +00:00
| _keyword-only_ | |
| `nlp` | The current `nlp` object. Defaults to `None`. ~~Optional[Language]~~ |
| `labels` | The label information to add to the component, as provided by the [`label_data`](#label_data) property after initialization. To generate a reusable JSON file from your data, you should run the [`init labels`](/api/cli#init-labels) command. If no labels are provided, the `get_examples` callback is used to extract the labels from the data, which may be a lot slower. ~~Optional[Iterable[str]]~~ |
Website migration from Gatsby to Next (#12058) * Rename all MDX file to `.mdx` * Lock current node version (#11885) * Apply Prettier (#11996) * Minor website fixes (#11974) [ci skip] * fix table * Migrate to Next WEB-17 (#12005) * Initial commit * Run `npx create-next-app@13 next-blog` * Install MDX packages Following: https://github.com/vercel/next.js/blob/77b5f79a4dff453abb62346bf75b14d859539b81/packages/next-mdx/readme.md * Add MDX to Next * Allow Next to handle `.md` and `.mdx` files. * Add VSCode extension recommendation * Disabled TypeScript strict mode for now * Add prettier * Apply Prettier to all files * Make sure to use correct Node version * Add basic implementation for `MDXRemote` * Add experimental Rust MDX parser * Add `/public` * Add SASS support * Remove default pages and styling * Convert to module This allows to use `import/export` syntax * Add import for custom components * Add ability to load plugins * Extract function This will make the next commit easier to read * Allow to handle directories for page creation * Refactoring * Allow to parse subfolders for pages * Extract logic * Redirect `index.mdx` to parent directory * Disabled ESLint during builds * Disabled typescript during build * Remove Gatsby from `README.md` * Rephrase Docker part of `README.md` * Update project structure in `README.md` * Move and rename plugins * Update plugin for wrapping sections * Add dependencies for plugin * Use plugin * Rename wrapper type * Simplify unnessary adding of id to sections The slugified section ids are useless, because they can not be referenced anywhere anyway. The navigation only works if the section has the same id as the heading. * Add plugin for custom attributes on Markdown elements * Add plugin to readd support for tables * Add plugin to fix problem with wrapped images For more details see this issue: https://github.com/mdx-js/mdx/issues/1798 * Add necessary meta data to pages * Install necessary dependencies * Remove outdated MDX handling * Remove reliance on `InlineList` * Use existing Remark components * Remove unallowed heading Before `h1` components where not overwritten and would never have worked and they aren't used anywhere either. * Add missing components to MDX * Add correct styling * Fix broken list * Fix broken CSS classes * Implement layout * Fix links * Fix broken images * Fix pattern image * Fix heading attributes * Rename heading attribute `new` was causing some weird issue, so renaming it to `version` * Update comment syntax in MDX * Merge imports * Fix markdown rendering inside components * Add model pages * Simplify anchors * Fix default value for theme * Add Universe index page * Add Universe categories * Add Universe projects * Fix Next problem with copy Next complains when the server renders something different then the client, therfor we move the differing logic to `useEffect` * Fix improper component nesting Next doesn't allow block elements inside a `<p>` * Replace landing page MDX with page component * Remove inlined iframe content * Remove ability to inline HTML content in iFrames * Remove MDX imports * Fix problem with image inside link in MDX * Escape character for MDX * Fix unescaped characters in MDX * Fix headings with logo * Allow to export static HTML pages * Add prebuild script This command is automatically run by Next * Replace `svg-loader` with `react-inlinesvg` `svg-loader` is no longer maintained * Fix ESLint `react-hooks/exhaustive-deps` * Fix dropdowns * Change code language from `cli` to `bash` * Remove unnessary language `none` * Fix invalid code language `markdown_` with an underscore was used to basically turn of syntax highlighting, but using unknown languages know throws an error. * Enable code blocks plugin * Readd `InlineCode` component MDX2 removed the `inlineCode` component > The special component name `inlineCode` was removed, we recommend to use `pre` for the block version of code, and code for both the block and inline versions Source: https://mdxjs.com/migrating/v2/#update-mdx-content * Remove unused code * Extract function to own file * Fix code syntax highlighting * Update syntax for code block meta data * Remove unused prop * Fix internal link recognition There is a problem with regex between Node and browser, and since Next runs the component on both, this create an error. `Prop `rel` did not match. Server: "null" Client: "noopener nofollow noreferrer"` This simplifies the implementation and fixes the above error. * Replace `react-helmet` with `next/head` * Fix `className` problem for JSX component * Fix broken bold markdown * Convert file to `.mjs` to be used by Node process * Add plugin to replace strings * Fix custom table row styling * Fix problem with `span` inside inline `code` React doesn't allow a `span` inside an inline `code` element and throws an error in dev mode. * Add `_document` to be able to customize `<html>` and `<body>` * Add `lang="en"` * Store Netlify settings in file This way we don't need to update via Netlify UI, which can be tricky if changing build settings. * Add sitemap * Add Smartypants * Add PWA support * Add `manifest.webmanifest` * Fix bug with anchor links after reloading There was no need for the previous implementation, since the browser handles this nativly. Additional the manual scrolling into view was actually broken, because the heading would disappear behind the menu bar. * Rename custom event I was googeling for ages to find out what kind of event `inview` is, only to figure out it was a custom event with a name that sounds pretty much like a native one. 🫠 * Fix missing comment syntax highlighting * Refactor Quickstart component The previous implementation was hidding the irrelevant lines via data-props and dynamically generated CSS. This created problems with Next and was also hard to follow. CSS was used to do what React is supposed to handle. The new implementation simplfy filters the list of children (React elements) via their props. * Fix syntax highlighting for Training Quickstart * Unify code rendering * Improve error logging in Juniper * Fix Juniper component * Automatically generate "Read Next" link * Add Plausible * Use recent DocSearch component and adjust styling * Fix images * Turn of image optimization > Image Optimization using Next.js' default loader is not compatible with `next export`. We currently deploy to Netlify via `next export` * Dont build pages starting with `_` * Remove unused files * Add Next plugin to Netlify * Fix button layout MDX automatically adds `p` tags around text on a new line and Prettier wants to put the text on a new line. Hacking with JSX string. * Add 404 page * Apply Prettier * Update Prettier for `package.json` Next sometimes wants to patch `package-lock.json`. The old Prettier setting indended with 4 spaces, but Next always indends with 2 spaces. Since `npm install` automatically uses the indendation from `package.json` for `package-lock.json` and to avoid the format switching back and forth, both files are now set to 2 spaces. * Apply Next patch to `package-lock.json` When starting the dev server Next would warn `warn - Found lockfile missing swc dependencies, patching...` and update the `package-lock.json`. These are the patched changes. * fix link Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * small backslash fixes * adjust to new style Co-authored-by: Marcus Blättermann <marcus@essenmitsosse.de>
2023-01-11 16:30:07 +00:00
## SpanCategorizer.predict {id="predict",tag="method"}
Add SpanCategorizer component (#6747) * Draft spancat model * Add spancat model * Add test for extract_spans * Add extract_spans layer * Upd extract_spans * Add spancat model * Add test for spancat model * Upd spancat model * Update spancat component * Upd spancat * Update spancat model * Add quick spancat test * Import SpanCategorizer * Fix SpanCategorizer component * Import SpanGroup * Fix span extraction * Fix import * Fix import * Upd model * Update spancat models * Add scoring, update defaults * Update and add docs * Fix type * Update spacy/ml/extract_spans.py * Auto-format and fix import * Fix comment * Fix type * Fix type * Update website/docs/api/spancategorizer.md * Fix comment Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Better defense Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Fix labels list Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/ml/extract_spans.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/pipeline/spancat.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Set annotations during update * Set annotations in spancat * fix imports in test * Update spacy/pipeline/spancat.py * replace MaxoutLogistic with LinearLogistic * fix config * various small fixes * remove set_annotations parameter in update * use our beloved tupley format with recent support for doc.spans * bugfix to allow renaming the default span_key (scores weren't showing up) * use different key in docs example * change defaults to better-working parameters from project (WIP) * register spacy.extract_spans.v1 for legacy purposes * Upd dev version so can build wheel * layers instead of architectures for smaller building blocks * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Include additional scores from overrides in combined score weights * Parameterize spans key in scoring Parameterize the `SpanCategorizer` `spans_key` for scoring purposes so that it's possible to evaluate multiple `spancat` components in the same pipeline. * Use the (intentionally very short) default spans key `sc` in the `SpanCategorizer` * Adjust the default score weights to include the default key * Adjust the scorer to use `spans_{spans_key}` as the prefix for the returned score * Revert addition of `attr_name` argument to `score_spans` and adjust the key in the `getter` instead. Note that for `spancat` components with a custom `span_key`, the score weights currently need to be modified manually in `[training.score_weights]` for them to be available during training. To suppress the default score weights `spans_sc_p/r/f` during training, set them to `null` in `[training.score_weights]`. * Update website/docs/api/scorer.md * Fix scorer for spans key containing underscore * Increment version * Add Spans to Evaluate CLI (#8439) * Add Spans to Evaluate CLI * Change to spans_key * Add spans per_type output Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Fix spancat GPU issues (#8455) * Fix GPU issues * Require thinc >=8.0.6 * Switch to glorot_uniform_init * Fix and test ngram suggester * Include final ngram in doc for all sizes * Fix ngrams for docs of the same length as ngram size * Handle batches of docs that result in no ngrams * Add tests Co-authored-by: Ines Montani <ines@ines.io> Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> Co-authored-by: Nirant <NirantK@users.noreply.github.com>
2021-06-24 10:35:27 +00:00
Apply the component's model to a batch of [`Doc`](/api/doc) objects without
modifying them.
> #### Example
>
> ```python
> spancat = nlp.add_pipe("spancat")
> scores = spancat.predict([doc1, doc2])
> ```
| Name | Description |
| ----------- | ------------------------------------------- |
| `docs` | The documents to predict. ~~Iterable[Doc]~~ |
| **RETURNS** | The model's prediction for each document. |
Website migration from Gatsby to Next (#12058) * Rename all MDX file to `.mdx` * Lock current node version (#11885) * Apply Prettier (#11996) * Minor website fixes (#11974) [ci skip] * fix table * Migrate to Next WEB-17 (#12005) * Initial commit * Run `npx create-next-app@13 next-blog` * Install MDX packages Following: https://github.com/vercel/next.js/blob/77b5f79a4dff453abb62346bf75b14d859539b81/packages/next-mdx/readme.md * Add MDX to Next * Allow Next to handle `.md` and `.mdx` files. * Add VSCode extension recommendation * Disabled TypeScript strict mode for now * Add prettier * Apply Prettier to all files * Make sure to use correct Node version * Add basic implementation for `MDXRemote` * Add experimental Rust MDX parser * Add `/public` * Add SASS support * Remove default pages and styling * Convert to module This allows to use `import/export` syntax * Add import for custom components * Add ability to load plugins * Extract function This will make the next commit easier to read * Allow to handle directories for page creation * Refactoring * Allow to parse subfolders for pages * Extract logic * Redirect `index.mdx` to parent directory * Disabled ESLint during builds * Disabled typescript during build * Remove Gatsby from `README.md` * Rephrase Docker part of `README.md` * Update project structure in `README.md` * Move and rename plugins * Update plugin for wrapping sections * Add dependencies for plugin * Use plugin * Rename wrapper type * Simplify unnessary adding of id to sections The slugified section ids are useless, because they can not be referenced anywhere anyway. The navigation only works if the section has the same id as the heading. * Add plugin for custom attributes on Markdown elements * Add plugin to readd support for tables * Add plugin to fix problem with wrapped images For more details see this issue: https://github.com/mdx-js/mdx/issues/1798 * Add necessary meta data to pages * Install necessary dependencies * Remove outdated MDX handling * Remove reliance on `InlineList` * Use existing Remark components * Remove unallowed heading Before `h1` components where not overwritten and would never have worked and they aren't used anywhere either. * Add missing components to MDX * Add correct styling * Fix broken list * Fix broken CSS classes * Implement layout * Fix links * Fix broken images * Fix pattern image * Fix heading attributes * Rename heading attribute `new` was causing some weird issue, so renaming it to `version` * Update comment syntax in MDX * Merge imports * Fix markdown rendering inside components * Add model pages * Simplify anchors * Fix default value for theme * Add Universe index page * Add Universe categories * Add Universe projects * Fix Next problem with copy Next complains when the server renders something different then the client, therfor we move the differing logic to `useEffect` * Fix improper component nesting Next doesn't allow block elements inside a `<p>` * Replace landing page MDX with page component * Remove inlined iframe content * Remove ability to inline HTML content in iFrames * Remove MDX imports * Fix problem with image inside link in MDX * Escape character for MDX * Fix unescaped characters in MDX * Fix headings with logo * Allow to export static HTML pages * Add prebuild script This command is automatically run by Next * Replace `svg-loader` with `react-inlinesvg` `svg-loader` is no longer maintained * Fix ESLint `react-hooks/exhaustive-deps` * Fix dropdowns * Change code language from `cli` to `bash` * Remove unnessary language `none` * Fix invalid code language `markdown_` with an underscore was used to basically turn of syntax highlighting, but using unknown languages know throws an error. * Enable code blocks plugin * Readd `InlineCode` component MDX2 removed the `inlineCode` component > The special component name `inlineCode` was removed, we recommend to use `pre` for the block version of code, and code for both the block and inline versions Source: https://mdxjs.com/migrating/v2/#update-mdx-content * Remove unused code * Extract function to own file * Fix code syntax highlighting * Update syntax for code block meta data * Remove unused prop * Fix internal link recognition There is a problem with regex between Node and browser, and since Next runs the component on both, this create an error. `Prop `rel` did not match. Server: "null" Client: "noopener nofollow noreferrer"` This simplifies the implementation and fixes the above error. * Replace `react-helmet` with `next/head` * Fix `className` problem for JSX component * Fix broken bold markdown * Convert file to `.mjs` to be used by Node process * Add plugin to replace strings * Fix custom table row styling * Fix problem with `span` inside inline `code` React doesn't allow a `span` inside an inline `code` element and throws an error in dev mode. * Add `_document` to be able to customize `<html>` and `<body>` * Add `lang="en"` * Store Netlify settings in file This way we don't need to update via Netlify UI, which can be tricky if changing build settings. * Add sitemap * Add Smartypants * Add PWA support * Add `manifest.webmanifest` * Fix bug with anchor links after reloading There was no need for the previous implementation, since the browser handles this nativly. Additional the manual scrolling into view was actually broken, because the heading would disappear behind the menu bar. * Rename custom event I was googeling for ages to find out what kind of event `inview` is, only to figure out it was a custom event with a name that sounds pretty much like a native one. 🫠 * Fix missing comment syntax highlighting * Refactor Quickstart component The previous implementation was hidding the irrelevant lines via data-props and dynamically generated CSS. This created problems with Next and was also hard to follow. CSS was used to do what React is supposed to handle. The new implementation simplfy filters the list of children (React elements) via their props. * Fix syntax highlighting for Training Quickstart * Unify code rendering * Improve error logging in Juniper * Fix Juniper component * Automatically generate "Read Next" link * Add Plausible * Use recent DocSearch component and adjust styling * Fix images * Turn of image optimization > Image Optimization using Next.js' default loader is not compatible with `next export`. We currently deploy to Netlify via `next export` * Dont build pages starting with `_` * Remove unused files * Add Next plugin to Netlify * Fix button layout MDX automatically adds `p` tags around text on a new line and Prettier wants to put the text on a new line. Hacking with JSX string. * Add 404 page * Apply Prettier * Update Prettier for `package.json` Next sometimes wants to patch `package-lock.json`. The old Prettier setting indended with 4 spaces, but Next always indends with 2 spaces. Since `npm install` automatically uses the indendation from `package.json` for `package-lock.json` and to avoid the format switching back and forth, both files are now set to 2 spaces. * Apply Next patch to `package-lock.json` When starting the dev server Next would warn `warn - Found lockfile missing swc dependencies, patching...` and update the `package-lock.json`. These are the patched changes. * fix link Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * small backslash fixes * adjust to new style Co-authored-by: Marcus Blättermann <marcus@essenmitsosse.de>
2023-01-11 16:30:07 +00:00
## SpanCategorizer.set_annotations {id="set_annotations",tag="method"}
Add SpanCategorizer component (#6747) * Draft spancat model * Add spancat model * Add test for extract_spans * Add extract_spans layer * Upd extract_spans * Add spancat model * Add test for spancat model * Upd spancat model * Update spancat component * Upd spancat * Update spancat model * Add quick spancat test * Import SpanCategorizer * Fix SpanCategorizer component * Import SpanGroup * Fix span extraction * Fix import * Fix import * Upd model * Update spancat models * Add scoring, update defaults * Update and add docs * Fix type * Update spacy/ml/extract_spans.py * Auto-format and fix import * Fix comment * Fix type * Fix type * Update website/docs/api/spancategorizer.md * Fix comment Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Better defense Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Fix labels list Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/ml/extract_spans.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/pipeline/spancat.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Set annotations during update * Set annotations in spancat * fix imports in test * Update spacy/pipeline/spancat.py * replace MaxoutLogistic with LinearLogistic * fix config * various small fixes * remove set_annotations parameter in update * use our beloved tupley format with recent support for doc.spans * bugfix to allow renaming the default span_key (scores weren't showing up) * use different key in docs example * change defaults to better-working parameters from project (WIP) * register spacy.extract_spans.v1 for legacy purposes * Upd dev version so can build wheel * layers instead of architectures for smaller building blocks * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Include additional scores from overrides in combined score weights * Parameterize spans key in scoring Parameterize the `SpanCategorizer` `spans_key` for scoring purposes so that it's possible to evaluate multiple `spancat` components in the same pipeline. * Use the (intentionally very short) default spans key `sc` in the `SpanCategorizer` * Adjust the default score weights to include the default key * Adjust the scorer to use `spans_{spans_key}` as the prefix for the returned score * Revert addition of `attr_name` argument to `score_spans` and adjust the key in the `getter` instead. Note that for `spancat` components with a custom `span_key`, the score weights currently need to be modified manually in `[training.score_weights]` for them to be available during training. To suppress the default score weights `spans_sc_p/r/f` during training, set them to `null` in `[training.score_weights]`. * Update website/docs/api/scorer.md * Fix scorer for spans key containing underscore * Increment version * Add Spans to Evaluate CLI (#8439) * Add Spans to Evaluate CLI * Change to spans_key * Add spans per_type output Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Fix spancat GPU issues (#8455) * Fix GPU issues * Require thinc >=8.0.6 * Switch to glorot_uniform_init * Fix and test ngram suggester * Include final ngram in doc for all sizes * Fix ngrams for docs of the same length as ngram size * Handle batches of docs that result in no ngrams * Add tests Co-authored-by: Ines Montani <ines@ines.io> Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> Co-authored-by: Nirant <NirantK@users.noreply.github.com>
2021-06-24 10:35:27 +00:00
Modify a batch of [`Doc`](/api/doc) objects using pre-computed scores.
> #### Example
>
> ```python
> spancat = nlp.add_pipe("spancat")
> scores = spancat.predict(docs)
> spancat.set_annotations(docs, scores)
> ```
| Name | Description |
| -------- | --------------------------------------------------------- |
| `docs` | The documents to modify. ~~Iterable[Doc]~~ |
| `scores` | The scores to set, produced by `SpanCategorizer.predict`. |
Website migration from Gatsby to Next (#12058) * Rename all MDX file to `.mdx` * Lock current node version (#11885) * Apply Prettier (#11996) * Minor website fixes (#11974) [ci skip] * fix table * Migrate to Next WEB-17 (#12005) * Initial commit * Run `npx create-next-app@13 next-blog` * Install MDX packages Following: https://github.com/vercel/next.js/blob/77b5f79a4dff453abb62346bf75b14d859539b81/packages/next-mdx/readme.md * Add MDX to Next * Allow Next to handle `.md` and `.mdx` files. * Add VSCode extension recommendation * Disabled TypeScript strict mode for now * Add prettier * Apply Prettier to all files * Make sure to use correct Node version * Add basic implementation for `MDXRemote` * Add experimental Rust MDX parser * Add `/public` * Add SASS support * Remove default pages and styling * Convert to module This allows to use `import/export` syntax * Add import for custom components * Add ability to load plugins * Extract function This will make the next commit easier to read * Allow to handle directories for page creation * Refactoring * Allow to parse subfolders for pages * Extract logic * Redirect `index.mdx` to parent directory * Disabled ESLint during builds * Disabled typescript during build * Remove Gatsby from `README.md` * Rephrase Docker part of `README.md` * Update project structure in `README.md` * Move and rename plugins * Update plugin for wrapping sections * Add dependencies for plugin * Use plugin * Rename wrapper type * Simplify unnessary adding of id to sections The slugified section ids are useless, because they can not be referenced anywhere anyway. The navigation only works if the section has the same id as the heading. * Add plugin for custom attributes on Markdown elements * Add plugin to readd support for tables * Add plugin to fix problem with wrapped images For more details see this issue: https://github.com/mdx-js/mdx/issues/1798 * Add necessary meta data to pages * Install necessary dependencies * Remove outdated MDX handling * Remove reliance on `InlineList` * Use existing Remark components * Remove unallowed heading Before `h1` components where not overwritten and would never have worked and they aren't used anywhere either. * Add missing components to MDX * Add correct styling * Fix broken list * Fix broken CSS classes * Implement layout * Fix links * Fix broken images * Fix pattern image * Fix heading attributes * Rename heading attribute `new` was causing some weird issue, so renaming it to `version` * Update comment syntax in MDX * Merge imports * Fix markdown rendering inside components * Add model pages * Simplify anchors * Fix default value for theme * Add Universe index page * Add Universe categories * Add Universe projects * Fix Next problem with copy Next complains when the server renders something different then the client, therfor we move the differing logic to `useEffect` * Fix improper component nesting Next doesn't allow block elements inside a `<p>` * Replace landing page MDX with page component * Remove inlined iframe content * Remove ability to inline HTML content in iFrames * Remove MDX imports * Fix problem with image inside link in MDX * Escape character for MDX * Fix unescaped characters in MDX * Fix headings with logo * Allow to export static HTML pages * Add prebuild script This command is automatically run by Next * Replace `svg-loader` with `react-inlinesvg` `svg-loader` is no longer maintained * Fix ESLint `react-hooks/exhaustive-deps` * Fix dropdowns * Change code language from `cli` to `bash` * Remove unnessary language `none` * Fix invalid code language `markdown_` with an underscore was used to basically turn of syntax highlighting, but using unknown languages know throws an error. * Enable code blocks plugin * Readd `InlineCode` component MDX2 removed the `inlineCode` component > The special component name `inlineCode` was removed, we recommend to use `pre` for the block version of code, and code for both the block and inline versions Source: https://mdxjs.com/migrating/v2/#update-mdx-content * Remove unused code * Extract function to own file * Fix code syntax highlighting * Update syntax for code block meta data * Remove unused prop * Fix internal link recognition There is a problem with regex between Node and browser, and since Next runs the component on both, this create an error. `Prop `rel` did not match. Server: "null" Client: "noopener nofollow noreferrer"` This simplifies the implementation and fixes the above error. * Replace `react-helmet` with `next/head` * Fix `className` problem for JSX component * Fix broken bold markdown * Convert file to `.mjs` to be used by Node process * Add plugin to replace strings * Fix custom table row styling * Fix problem with `span` inside inline `code` React doesn't allow a `span` inside an inline `code` element and throws an error in dev mode. * Add `_document` to be able to customize `<html>` and `<body>` * Add `lang="en"` * Store Netlify settings in file This way we don't need to update via Netlify UI, which can be tricky if changing build settings. * Add sitemap * Add Smartypants * Add PWA support * Add `manifest.webmanifest` * Fix bug with anchor links after reloading There was no need for the previous implementation, since the browser handles this nativly. Additional the manual scrolling into view was actually broken, because the heading would disappear behind the menu bar. * Rename custom event I was googeling for ages to find out what kind of event `inview` is, only to figure out it was a custom event with a name that sounds pretty much like a native one. 🫠 * Fix missing comment syntax highlighting * Refactor Quickstart component The previous implementation was hidding the irrelevant lines via data-props and dynamically generated CSS. This created problems with Next and was also hard to follow. CSS was used to do what React is supposed to handle. The new implementation simplfy filters the list of children (React elements) via their props. * Fix syntax highlighting for Training Quickstart * Unify code rendering * Improve error logging in Juniper * Fix Juniper component * Automatically generate "Read Next" link * Add Plausible * Use recent DocSearch component and adjust styling * Fix images * Turn of image optimization > Image Optimization using Next.js' default loader is not compatible with `next export`. We currently deploy to Netlify via `next export` * Dont build pages starting with `_` * Remove unused files * Add Next plugin to Netlify * Fix button layout MDX automatically adds `p` tags around text on a new line and Prettier wants to put the text on a new line. Hacking with JSX string. * Add 404 page * Apply Prettier * Update Prettier for `package.json` Next sometimes wants to patch `package-lock.json`. The old Prettier setting indended with 4 spaces, but Next always indends with 2 spaces. Since `npm install` automatically uses the indendation from `package.json` for `package-lock.json` and to avoid the format switching back and forth, both files are now set to 2 spaces. * Apply Next patch to `package-lock.json` When starting the dev server Next would warn `warn - Found lockfile missing swc dependencies, patching...` and update the `package-lock.json`. These are the patched changes. * fix link Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * small backslash fixes * adjust to new style Co-authored-by: Marcus Blättermann <marcus@essenmitsosse.de>
2023-01-11 16:30:07 +00:00
## SpanCategorizer.update {id="update",tag="method"}
Add SpanCategorizer component (#6747) * Draft spancat model * Add spancat model * Add test for extract_spans * Add extract_spans layer * Upd extract_spans * Add spancat model * Add test for spancat model * Upd spancat model * Update spancat component * Upd spancat * Update spancat model * Add quick spancat test * Import SpanCategorizer * Fix SpanCategorizer component * Import SpanGroup * Fix span extraction * Fix import * Fix import * Upd model * Update spancat models * Add scoring, update defaults * Update and add docs * Fix type * Update spacy/ml/extract_spans.py * Auto-format and fix import * Fix comment * Fix type * Fix type * Update website/docs/api/spancategorizer.md * Fix comment Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Better defense Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Fix labels list Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/ml/extract_spans.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/pipeline/spancat.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Set annotations during update * Set annotations in spancat * fix imports in test * Update spacy/pipeline/spancat.py * replace MaxoutLogistic with LinearLogistic * fix config * various small fixes * remove set_annotations parameter in update * use our beloved tupley format with recent support for doc.spans * bugfix to allow renaming the default span_key (scores weren't showing up) * use different key in docs example * change defaults to better-working parameters from project (WIP) * register spacy.extract_spans.v1 for legacy purposes * Upd dev version so can build wheel * layers instead of architectures for smaller building blocks * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Include additional scores from overrides in combined score weights * Parameterize spans key in scoring Parameterize the `SpanCategorizer` `spans_key` for scoring purposes so that it's possible to evaluate multiple `spancat` components in the same pipeline. * Use the (intentionally very short) default spans key `sc` in the `SpanCategorizer` * Adjust the default score weights to include the default key * Adjust the scorer to use `spans_{spans_key}` as the prefix for the returned score * Revert addition of `attr_name` argument to `score_spans` and adjust the key in the `getter` instead. Note that for `spancat` components with a custom `span_key`, the score weights currently need to be modified manually in `[training.score_weights]` for them to be available during training. To suppress the default score weights `spans_sc_p/r/f` during training, set them to `null` in `[training.score_weights]`. * Update website/docs/api/scorer.md * Fix scorer for spans key containing underscore * Increment version * Add Spans to Evaluate CLI (#8439) * Add Spans to Evaluate CLI * Change to spans_key * Add spans per_type output Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Fix spancat GPU issues (#8455) * Fix GPU issues * Require thinc >=8.0.6 * Switch to glorot_uniform_init * Fix and test ngram suggester * Include final ngram in doc for all sizes * Fix ngrams for docs of the same length as ngram size * Handle batches of docs that result in no ngrams * Add tests Co-authored-by: Ines Montani <ines@ines.io> Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> Co-authored-by: Nirant <NirantK@users.noreply.github.com>
2021-06-24 10:35:27 +00:00
Learn from a batch of [`Example`](/api/example) objects containing the
predictions and gold-standard annotations, and update the component's model.
Delegates to [`predict`](/api/spancategorizer#predict) and
[`get_loss`](/api/spancategorizer#get_loss).
> #### Example
>
> ```python
> spancat = nlp.add_pipe("spancat")
> optimizer = nlp.initialize()
> losses = spancat.update(examples, sgd=optimizer)
> ```
2021-06-28 09:48:11 +00:00
| Name | Description |
| -------------- | ------------------------------------------------------------------------------------------------------------------------ |
| `examples` | A batch of [`Example`](/api/example) objects to learn from. ~~Iterable[Example]~~ |
| _keyword-only_ | |
| `drop` | The dropout rate. ~~float~~ |
| `sgd` | An optimizer. Will be created via [`create_optimizer`](#create_optimizer) if not set. ~~Optional[Optimizer]~~ |
| `losses` | Optional record of the loss during training. Updated using the component name as the key. ~~Optional[Dict[str, float]]~~ |
| **RETURNS** | The updated `losses` dictionary. ~~Dict[str, float]~~ |
Add SpanCategorizer component (#6747) * Draft spancat model * Add spancat model * Add test for extract_spans * Add extract_spans layer * Upd extract_spans * Add spancat model * Add test for spancat model * Upd spancat model * Update spancat component * Upd spancat * Update spancat model * Add quick spancat test * Import SpanCategorizer * Fix SpanCategorizer component * Import SpanGroup * Fix span extraction * Fix import * Fix import * Upd model * Update spancat models * Add scoring, update defaults * Update and add docs * Fix type * Update spacy/ml/extract_spans.py * Auto-format and fix import * Fix comment * Fix type * Fix type * Update website/docs/api/spancategorizer.md * Fix comment Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Better defense Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Fix labels list Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/ml/extract_spans.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/pipeline/spancat.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Set annotations during update * Set annotations in spancat * fix imports in test * Update spacy/pipeline/spancat.py * replace MaxoutLogistic with LinearLogistic * fix config * various small fixes * remove set_annotations parameter in update * use our beloved tupley format with recent support for doc.spans * bugfix to allow renaming the default span_key (scores weren't showing up) * use different key in docs example * change defaults to better-working parameters from project (WIP) * register spacy.extract_spans.v1 for legacy purposes * Upd dev version so can build wheel * layers instead of architectures for smaller building blocks * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Include additional scores from overrides in combined score weights * Parameterize spans key in scoring Parameterize the `SpanCategorizer` `spans_key` for scoring purposes so that it's possible to evaluate multiple `spancat` components in the same pipeline. * Use the (intentionally very short) default spans key `sc` in the `SpanCategorizer` * Adjust the default score weights to include the default key * Adjust the scorer to use `spans_{spans_key}` as the prefix for the returned score * Revert addition of `attr_name` argument to `score_spans` and adjust the key in the `getter` instead. Note that for `spancat` components with a custom `span_key`, the score weights currently need to be modified manually in `[training.score_weights]` for them to be available during training. To suppress the default score weights `spans_sc_p/r/f` during training, set them to `null` in `[training.score_weights]`. * Update website/docs/api/scorer.md * Fix scorer for spans key containing underscore * Increment version * Add Spans to Evaluate CLI (#8439) * Add Spans to Evaluate CLI * Change to spans_key * Add spans per_type output Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Fix spancat GPU issues (#8455) * Fix GPU issues * Require thinc >=8.0.6 * Switch to glorot_uniform_init * Fix and test ngram suggester * Include final ngram in doc for all sizes * Fix ngrams for docs of the same length as ngram size * Handle batches of docs that result in no ngrams * Add tests Co-authored-by: Ines Montani <ines@ines.io> Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> Co-authored-by: Nirant <NirantK@users.noreply.github.com>
2021-06-24 10:35:27 +00:00
Website migration from Gatsby to Next (#12058) * Rename all MDX file to `.mdx` * Lock current node version (#11885) * Apply Prettier (#11996) * Minor website fixes (#11974) [ci skip] * fix table * Migrate to Next WEB-17 (#12005) * Initial commit * Run `npx create-next-app@13 next-blog` * Install MDX packages Following: https://github.com/vercel/next.js/blob/77b5f79a4dff453abb62346bf75b14d859539b81/packages/next-mdx/readme.md * Add MDX to Next * Allow Next to handle `.md` and `.mdx` files. * Add VSCode extension recommendation * Disabled TypeScript strict mode for now * Add prettier * Apply Prettier to all files * Make sure to use correct Node version * Add basic implementation for `MDXRemote` * Add experimental Rust MDX parser * Add `/public` * Add SASS support * Remove default pages and styling * Convert to module This allows to use `import/export` syntax * Add import for custom components * Add ability to load plugins * Extract function This will make the next commit easier to read * Allow to handle directories for page creation * Refactoring * Allow to parse subfolders for pages * Extract logic * Redirect `index.mdx` to parent directory * Disabled ESLint during builds * Disabled typescript during build * Remove Gatsby from `README.md` * Rephrase Docker part of `README.md` * Update project structure in `README.md` * Move and rename plugins * Update plugin for wrapping sections * Add dependencies for plugin * Use plugin * Rename wrapper type * Simplify unnessary adding of id to sections The slugified section ids are useless, because they can not be referenced anywhere anyway. The navigation only works if the section has the same id as the heading. * Add plugin for custom attributes on Markdown elements * Add plugin to readd support for tables * Add plugin to fix problem with wrapped images For more details see this issue: https://github.com/mdx-js/mdx/issues/1798 * Add necessary meta data to pages * Install necessary dependencies * Remove outdated MDX handling * Remove reliance on `InlineList` * Use existing Remark components * Remove unallowed heading Before `h1` components where not overwritten and would never have worked and they aren't used anywhere either. * Add missing components to MDX * Add correct styling * Fix broken list * Fix broken CSS classes * Implement layout * Fix links * Fix broken images * Fix pattern image * Fix heading attributes * Rename heading attribute `new` was causing some weird issue, so renaming it to `version` * Update comment syntax in MDX * Merge imports * Fix markdown rendering inside components * Add model pages * Simplify anchors * Fix default value for theme * Add Universe index page * Add Universe categories * Add Universe projects * Fix Next problem with copy Next complains when the server renders something different then the client, therfor we move the differing logic to `useEffect` * Fix improper component nesting Next doesn't allow block elements inside a `<p>` * Replace landing page MDX with page component * Remove inlined iframe content * Remove ability to inline HTML content in iFrames * Remove MDX imports * Fix problem with image inside link in MDX * Escape character for MDX * Fix unescaped characters in MDX * Fix headings with logo * Allow to export static HTML pages * Add prebuild script This command is automatically run by Next * Replace `svg-loader` with `react-inlinesvg` `svg-loader` is no longer maintained * Fix ESLint `react-hooks/exhaustive-deps` * Fix dropdowns * Change code language from `cli` to `bash` * Remove unnessary language `none` * Fix invalid code language `markdown_` with an underscore was used to basically turn of syntax highlighting, but using unknown languages know throws an error. * Enable code blocks plugin * Readd `InlineCode` component MDX2 removed the `inlineCode` component > The special component name `inlineCode` was removed, we recommend to use `pre` for the block version of code, and code for both the block and inline versions Source: https://mdxjs.com/migrating/v2/#update-mdx-content * Remove unused code * Extract function to own file * Fix code syntax highlighting * Update syntax for code block meta data * Remove unused prop * Fix internal link recognition There is a problem with regex between Node and browser, and since Next runs the component on both, this create an error. `Prop `rel` did not match. Server: "null" Client: "noopener nofollow noreferrer"` This simplifies the implementation and fixes the above error. * Replace `react-helmet` with `next/head` * Fix `className` problem for JSX component * Fix broken bold markdown * Convert file to `.mjs` to be used by Node process * Add plugin to replace strings * Fix custom table row styling * Fix problem with `span` inside inline `code` React doesn't allow a `span` inside an inline `code` element and throws an error in dev mode. * Add `_document` to be able to customize `<html>` and `<body>` * Add `lang="en"` * Store Netlify settings in file This way we don't need to update via Netlify UI, which can be tricky if changing build settings. * Add sitemap * Add Smartypants * Add PWA support * Add `manifest.webmanifest` * Fix bug with anchor links after reloading There was no need for the previous implementation, since the browser handles this nativly. Additional the manual scrolling into view was actually broken, because the heading would disappear behind the menu bar. * Rename custom event I was googeling for ages to find out what kind of event `inview` is, only to figure out it was a custom event with a name that sounds pretty much like a native one. 🫠 * Fix missing comment syntax highlighting * Refactor Quickstart component The previous implementation was hidding the irrelevant lines via data-props and dynamically generated CSS. This created problems with Next and was also hard to follow. CSS was used to do what React is supposed to handle. The new implementation simplfy filters the list of children (React elements) via their props. * Fix syntax highlighting for Training Quickstart * Unify code rendering * Improve error logging in Juniper * Fix Juniper component * Automatically generate "Read Next" link * Add Plausible * Use recent DocSearch component and adjust styling * Fix images * Turn of image optimization > Image Optimization using Next.js' default loader is not compatible with `next export`. We currently deploy to Netlify via `next export` * Dont build pages starting with `_` * Remove unused files * Add Next plugin to Netlify * Fix button layout MDX automatically adds `p` tags around text on a new line and Prettier wants to put the text on a new line. Hacking with JSX string. * Add 404 page * Apply Prettier * Update Prettier for `package.json` Next sometimes wants to patch `package-lock.json`. The old Prettier setting indended with 4 spaces, but Next always indends with 2 spaces. Since `npm install` automatically uses the indendation from `package.json` for `package-lock.json` and to avoid the format switching back and forth, both files are now set to 2 spaces. * Apply Next patch to `package-lock.json` When starting the dev server Next would warn `warn - Found lockfile missing swc dependencies, patching...` and update the `package-lock.json`. These are the patched changes. * fix link Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * small backslash fixes * adjust to new style Co-authored-by: Marcus Blättermann <marcus@essenmitsosse.de>
2023-01-11 16:30:07 +00:00
## SpanCategorizer.set_candidates {id="set_candidates",tag="method", version="3.3"}
Use the suggester to add a list of [`Span`](/api/span) candidates to a list of
[`Doc`](/api/doc) objects. This method is intended to be used for debugging
purposes.
> #### Example
>
> ```python
> spancat = nlp.add_pipe("spancat")
> spancat.set_candidates(docs, "candidates")
> ```
| Name | Description |
| ---------------- | -------------------------------------------------------------------- |
| `docs` | The documents to modify. ~~Iterable[Doc]~~ |
| `candidates_key` | Key of the Doc.spans dict to save the candidate spans under. ~~str~~ |
Website migration from Gatsby to Next (#12058) * Rename all MDX file to `.mdx` * Lock current node version (#11885) * Apply Prettier (#11996) * Minor website fixes (#11974) [ci skip] * fix table * Migrate to Next WEB-17 (#12005) * Initial commit * Run `npx create-next-app@13 next-blog` * Install MDX packages Following: https://github.com/vercel/next.js/blob/77b5f79a4dff453abb62346bf75b14d859539b81/packages/next-mdx/readme.md * Add MDX to Next * Allow Next to handle `.md` and `.mdx` files. * Add VSCode extension recommendation * Disabled TypeScript strict mode for now * Add prettier * Apply Prettier to all files * Make sure to use correct Node version * Add basic implementation for `MDXRemote` * Add experimental Rust MDX parser * Add `/public` * Add SASS support * Remove default pages and styling * Convert to module This allows to use `import/export` syntax * Add import for custom components * Add ability to load plugins * Extract function This will make the next commit easier to read * Allow to handle directories for page creation * Refactoring * Allow to parse subfolders for pages * Extract logic * Redirect `index.mdx` to parent directory * Disabled ESLint during builds * Disabled typescript during build * Remove Gatsby from `README.md` * Rephrase Docker part of `README.md` * Update project structure in `README.md` * Move and rename plugins * Update plugin for wrapping sections * Add dependencies for plugin * Use plugin * Rename wrapper type * Simplify unnessary adding of id to sections The slugified section ids are useless, because they can not be referenced anywhere anyway. The navigation only works if the section has the same id as the heading. * Add plugin for custom attributes on Markdown elements * Add plugin to readd support for tables * Add plugin to fix problem with wrapped images For more details see this issue: https://github.com/mdx-js/mdx/issues/1798 * Add necessary meta data to pages * Install necessary dependencies * Remove outdated MDX handling * Remove reliance on `InlineList` * Use existing Remark components * Remove unallowed heading Before `h1` components where not overwritten and would never have worked and they aren't used anywhere either. * Add missing components to MDX * Add correct styling * Fix broken list * Fix broken CSS classes * Implement layout * Fix links * Fix broken images * Fix pattern image * Fix heading attributes * Rename heading attribute `new` was causing some weird issue, so renaming it to `version` * Update comment syntax in MDX * Merge imports * Fix markdown rendering inside components * Add model pages * Simplify anchors * Fix default value for theme * Add Universe index page * Add Universe categories * Add Universe projects * Fix Next problem with copy Next complains when the server renders something different then the client, therfor we move the differing logic to `useEffect` * Fix improper component nesting Next doesn't allow block elements inside a `<p>` * Replace landing page MDX with page component * Remove inlined iframe content * Remove ability to inline HTML content in iFrames * Remove MDX imports * Fix problem with image inside link in MDX * Escape character for MDX * Fix unescaped characters in MDX * Fix headings with logo * Allow to export static HTML pages * Add prebuild script This command is automatically run by Next * Replace `svg-loader` with `react-inlinesvg` `svg-loader` is no longer maintained * Fix ESLint `react-hooks/exhaustive-deps` * Fix dropdowns * Change code language from `cli` to `bash` * Remove unnessary language `none` * Fix invalid code language `markdown_` with an underscore was used to basically turn of syntax highlighting, but using unknown languages know throws an error. * Enable code blocks plugin * Readd `InlineCode` component MDX2 removed the `inlineCode` component > The special component name `inlineCode` was removed, we recommend to use `pre` for the block version of code, and code for both the block and inline versions Source: https://mdxjs.com/migrating/v2/#update-mdx-content * Remove unused code * Extract function to own file * Fix code syntax highlighting * Update syntax for code block meta data * Remove unused prop * Fix internal link recognition There is a problem with regex between Node and browser, and since Next runs the component on both, this create an error. `Prop `rel` did not match. Server: "null" Client: "noopener nofollow noreferrer"` This simplifies the implementation and fixes the above error. * Replace `react-helmet` with `next/head` * Fix `className` problem for JSX component * Fix broken bold markdown * Convert file to `.mjs` to be used by Node process * Add plugin to replace strings * Fix custom table row styling * Fix problem with `span` inside inline `code` React doesn't allow a `span` inside an inline `code` element and throws an error in dev mode. * Add `_document` to be able to customize `<html>` and `<body>` * Add `lang="en"` * Store Netlify settings in file This way we don't need to update via Netlify UI, which can be tricky if changing build settings. * Add sitemap * Add Smartypants * Add PWA support * Add `manifest.webmanifest` * Fix bug with anchor links after reloading There was no need for the previous implementation, since the browser handles this nativly. Additional the manual scrolling into view was actually broken, because the heading would disappear behind the menu bar. * Rename custom event I was googeling for ages to find out what kind of event `inview` is, only to figure out it was a custom event with a name that sounds pretty much like a native one. 🫠 * Fix missing comment syntax highlighting * Refactor Quickstart component The previous implementation was hidding the irrelevant lines via data-props and dynamically generated CSS. This created problems with Next and was also hard to follow. CSS was used to do what React is supposed to handle. The new implementation simplfy filters the list of children (React elements) via their props. * Fix syntax highlighting for Training Quickstart * Unify code rendering * Improve error logging in Juniper * Fix Juniper component * Automatically generate "Read Next" link * Add Plausible * Use recent DocSearch component and adjust styling * Fix images * Turn of image optimization > Image Optimization using Next.js' default loader is not compatible with `next export`. We currently deploy to Netlify via `next export` * Dont build pages starting with `_` * Remove unused files * Add Next plugin to Netlify * Fix button layout MDX automatically adds `p` tags around text on a new line and Prettier wants to put the text on a new line. Hacking with JSX string. * Add 404 page * Apply Prettier * Update Prettier for `package.json` Next sometimes wants to patch `package-lock.json`. The old Prettier setting indended with 4 spaces, but Next always indends with 2 spaces. Since `npm install` automatically uses the indendation from `package.json` for `package-lock.json` and to avoid the format switching back and forth, both files are now set to 2 spaces. * Apply Next patch to `package-lock.json` When starting the dev server Next would warn `warn - Found lockfile missing swc dependencies, patching...` and update the `package-lock.json`. These are the patched changes. * fix link Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * small backslash fixes * adjust to new style Co-authored-by: Marcus Blättermann <marcus@essenmitsosse.de>
2023-01-11 16:30:07 +00:00
## SpanCategorizer.get_loss {id="get_loss",tag="method"}
Add SpanCategorizer component (#6747) * Draft spancat model * Add spancat model * Add test for extract_spans * Add extract_spans layer * Upd extract_spans * Add spancat model * Add test for spancat model * Upd spancat model * Update spancat component * Upd spancat * Update spancat model * Add quick spancat test * Import SpanCategorizer * Fix SpanCategorizer component * Import SpanGroup * Fix span extraction * Fix import * Fix import * Upd model * Update spancat models * Add scoring, update defaults * Update and add docs * Fix type * Update spacy/ml/extract_spans.py * Auto-format and fix import * Fix comment * Fix type * Fix type * Update website/docs/api/spancategorizer.md * Fix comment Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Better defense Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Fix labels list Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/ml/extract_spans.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/pipeline/spancat.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Set annotations during update * Set annotations in spancat * fix imports in test * Update spacy/pipeline/spancat.py * replace MaxoutLogistic with LinearLogistic * fix config * various small fixes * remove set_annotations parameter in update * use our beloved tupley format with recent support for doc.spans * bugfix to allow renaming the default span_key (scores weren't showing up) * use different key in docs example * change defaults to better-working parameters from project (WIP) * register spacy.extract_spans.v1 for legacy purposes * Upd dev version so can build wheel * layers instead of architectures for smaller building blocks * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Include additional scores from overrides in combined score weights * Parameterize spans key in scoring Parameterize the `SpanCategorizer` `spans_key` for scoring purposes so that it's possible to evaluate multiple `spancat` components in the same pipeline. * Use the (intentionally very short) default spans key `sc` in the `SpanCategorizer` * Adjust the default score weights to include the default key * Adjust the scorer to use `spans_{spans_key}` as the prefix for the returned score * Revert addition of `attr_name` argument to `score_spans` and adjust the key in the `getter` instead. Note that for `spancat` components with a custom `span_key`, the score weights currently need to be modified manually in `[training.score_weights]` for them to be available during training. To suppress the default score weights `spans_sc_p/r/f` during training, set them to `null` in `[training.score_weights]`. * Update website/docs/api/scorer.md * Fix scorer for spans key containing underscore * Increment version * Add Spans to Evaluate CLI (#8439) * Add Spans to Evaluate CLI * Change to spans_key * Add spans per_type output Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Fix spancat GPU issues (#8455) * Fix GPU issues * Require thinc >=8.0.6 * Switch to glorot_uniform_init * Fix and test ngram suggester * Include final ngram in doc for all sizes * Fix ngrams for docs of the same length as ngram size * Handle batches of docs that result in no ngrams * Add tests Co-authored-by: Ines Montani <ines@ines.io> Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> Co-authored-by: Nirant <NirantK@users.noreply.github.com>
2021-06-24 10:35:27 +00:00
Find the loss and gradient of loss for the batch of documents and their
predicted scores.
> #### Example
>
> ```python
> spancat = nlp.add_pipe("spancat")
> scores = spancat.predict([eg.predicted for eg in examples])
> loss, d_loss = spancat.get_loss(examples, scores)
> ```
🏷 Add Mypy check to CI and ignore all existing Mypy errors (#9167) * 🚨 Ignore all existing Mypy errors * 🏗 Add Mypy check to CI * Add types-mock and types-requests as dev requirements * Add additional type ignore directives * Add types packages to dev-only list in reqs test * Add types-dataclasses for python 3.6 * Add ignore to pretrain * 🏷 Improve type annotation on `run_command` helper The `run_command` helper previously declared that it returned an `Optional[subprocess.CompletedProcess]`, but it isn't actually possible for the function to return `None`. These changes modify the type annotation of the `run_command` helper and remove all now-unnecessary `# type: ignore` directives. * 🔧 Allow variable type redefinition in limited contexts These changes modify how Mypy is configured to allow variables to have their type automatically redefined under certain conditions. The Mypy documentation contains the following example: ```python def process(items: List[str]) -> None: # 'items' has type List[str] items = [item.split() for item in items] # 'items' now has type List[List[str]] ... ``` This configuration change is especially helpful in reducing the number of `# type: ignore` directives needed to handle the common pattern of: * Accepting a filepath as a string * Overwriting the variable using `filepath = ensure_path(filepath)` These changes enable redefinition and remove all `# type: ignore` directives rendered redundant by this change. * 🏷 Add type annotation to converters mapping * 🚨 Fix Mypy error in convert CLI argument verification * 🏷 Improve type annotation on `resolve_dot_names` helper * 🏷 Add type annotations for `Vocab` attributes `strings` and `vectors` * 🏷 Add type annotations for more `Vocab` attributes * 🏷 Add loose type annotation for gold data compilation * 🏷 Improve `_format_labels` type annotation * 🏷 Fix `get_lang_class` type annotation * 🏷 Loosen return type of `Language.evaluate` * 🏷 Don't accept `Scorer` in `handle_scores_per_type` * 🏷 Add `string_to_list` overloads * 🏷 Fix non-Optional command-line options * 🙈 Ignore redefinition of `wandb_logger` in `loggers.py` * ➕ Install `typing_extensions` in Python 3.8+ The `typing_extensions` package states that it should be used when "writing code that must be compatible with multiple Python versions". Since SpaCy needs to support multiple Python versions, it should be used when newer `typing` module members are required. One example of this is `Literal`, which is available starting with Python 3.8. Previously SpaCy tried to import `Literal` from `typing`, falling back to `typing_extensions` if the import failed. However, Mypy doesn't seem to be able to understand what `Literal` means when the initial import means. Therefore, these changes modify how `compat` imports `Literal` by always importing it from `typing_extensions`. These changes also modify how `typing_extensions` is installed, so that it is a requirement for all Python versions, including those greater than or equal to 3.8. * 🏷 Improve type annotation for `Language.pipe` These changes add a missing overload variant to the type signature of `Language.pipe`. Additionally, the type signature is enhanced to allow type checkers to differentiate between the two overload variants based on the `as_tuple` parameter. Fixes #8772 * ➖ Don't install `typing-extensions` in Python 3.8+ After more detailed analysis of how to implement Python version-specific type annotations using SpaCy, it has been determined that by branching on a comparison against `sys.version_info` can be statically analyzed by Mypy well enough to enable us to conditionally use `typing_extensions.Literal`. This means that we no longer need to install `typing_extensions` for Python versions greater than or equal to 3.8! 🎉 These changes revert previous changes installing `typing-extensions` regardless of Python version and modify how we import the `Literal` type to ensure that Mypy treats it properly. * resolve mypy errors for Strict pydantic types * refactor code to avoid missing return statement * fix types of convert CLI command * avoid list-set confustion in debug_data * fix typo and formatting * small fixes to avoid type ignores * fix types in profile CLI command and make it more efficient * type fixes in projects CLI * put one ignore back * type fixes for render * fix render types - the sequel * fix BaseDefault in language definitions * fix type of noun_chunks iterator - yields tuple instead of span * fix types in language-specific modules * 🏷 Expand accepted inputs of `get_string_id` `get_string_id` accepts either a string (in which case it returns its ID) or an ID (in which case it immediately returns the ID). These changes extend the type annotation of `get_string_id` to indicate that it can accept either strings or IDs. * 🏷 Handle override types in `combine_score_weights` The `combine_score_weights` function allows users to pass an `overrides` mapping to override data extracted from the `weights` argument. Since it allows `Optional` dictionary values, the return value may also include `Optional` dictionary values. These changes update the type annotations for `combine_score_weights` to reflect this fact. * 🏷 Fix tokenizer serialization method signatures in `DummyTokenizer` * 🏷 Fix redefinition of `wandb_logger` These changes fix the redefinition of `wandb_logger` by giving a separate name to each `WandbLogger` version. For backwards-compatibility, `spacy.train` still exports `wandb_logger_v3` as `wandb_logger` for now. * more fixes for typing in language * type fixes in model definitions * 🏷 Annotate `_RandomWords.probs` as `NDArray` * 🏷 Annotate `tok2vec` layers to help Mypy * 🐛 Fix `_RandomWords.probs` type annotations for Python 3.6 Also remove an import that I forgot to move to the top of the module 😅 * more fixes for matchers and other pipeline components * quick fix for entity linker * fixing types for spancat, textcat, etc * bugfix for tok2vec * type annotations for scorer * add runtime_checkable for Protocol * type and import fixes in tests * mypy fixes for training utilities * few fixes in util * fix import * 🐵 Remove unused `# type: ignore` directives * 🏷 Annotate `Language._components` * 🏷 Annotate `spacy.pipeline.Pipe` * add doc as property to span.pyi * small fixes and cleanup * explicit type annotations instead of via comment Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: svlandeg <svlandeg@github.com>
2021-10-14 13:21:40 +00:00
| Name | Description |
| -------------- | --------------------------------------------------------------------------- |
| `examples` | The batch of examples. ~~Iterable[Example]~~ |
| `spans_scores` | Scores representing the model's predictions. ~~Tuple[Ragged, Floats2d]~~ |
| **RETURNS** | The loss and the gradient, i.e. `(loss, gradient)`. ~~Tuple[float, float]~~ |
Add SpanCategorizer component (#6747) * Draft spancat model * Add spancat model * Add test for extract_spans * Add extract_spans layer * Upd extract_spans * Add spancat model * Add test for spancat model * Upd spancat model * Update spancat component * Upd spancat * Update spancat model * Add quick spancat test * Import SpanCategorizer * Fix SpanCategorizer component * Import SpanGroup * Fix span extraction * Fix import * Fix import * Upd model * Update spancat models * Add scoring, update defaults * Update and add docs * Fix type * Update spacy/ml/extract_spans.py * Auto-format and fix import * Fix comment * Fix type * Fix type * Update website/docs/api/spancategorizer.md * Fix comment Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Better defense Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Fix labels list Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/ml/extract_spans.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/pipeline/spancat.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Set annotations during update * Set annotations in spancat * fix imports in test * Update spacy/pipeline/spancat.py * replace MaxoutLogistic with LinearLogistic * fix config * various small fixes * remove set_annotations parameter in update * use our beloved tupley format with recent support for doc.spans * bugfix to allow renaming the default span_key (scores weren't showing up) * use different key in docs example * change defaults to better-working parameters from project (WIP) * register spacy.extract_spans.v1 for legacy purposes * Upd dev version so can build wheel * layers instead of architectures for smaller building blocks * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Include additional scores from overrides in combined score weights * Parameterize spans key in scoring Parameterize the `SpanCategorizer` `spans_key` for scoring purposes so that it's possible to evaluate multiple `spancat` components in the same pipeline. * Use the (intentionally very short) default spans key `sc` in the `SpanCategorizer` * Adjust the default score weights to include the default key * Adjust the scorer to use `spans_{spans_key}` as the prefix for the returned score * Revert addition of `attr_name` argument to `score_spans` and adjust the key in the `getter` instead. Note that for `spancat` components with a custom `span_key`, the score weights currently need to be modified manually in `[training.score_weights]` for them to be available during training. To suppress the default score weights `spans_sc_p/r/f` during training, set them to `null` in `[training.score_weights]`. * Update website/docs/api/scorer.md * Fix scorer for spans key containing underscore * Increment version * Add Spans to Evaluate CLI (#8439) * Add Spans to Evaluate CLI * Change to spans_key * Add spans per_type output Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Fix spancat GPU issues (#8455) * Fix GPU issues * Require thinc >=8.0.6 * Switch to glorot_uniform_init * Fix and test ngram suggester * Include final ngram in doc for all sizes * Fix ngrams for docs of the same length as ngram size * Handle batches of docs that result in no ngrams * Add tests Co-authored-by: Ines Montani <ines@ines.io> Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> Co-authored-by: Nirant <NirantK@users.noreply.github.com>
2021-06-24 10:35:27 +00:00
Website migration from Gatsby to Next (#12058) * Rename all MDX file to `.mdx` * Lock current node version (#11885) * Apply Prettier (#11996) * Minor website fixes (#11974) [ci skip] * fix table * Migrate to Next WEB-17 (#12005) * Initial commit * Run `npx create-next-app@13 next-blog` * Install MDX packages Following: https://github.com/vercel/next.js/blob/77b5f79a4dff453abb62346bf75b14d859539b81/packages/next-mdx/readme.md * Add MDX to Next * Allow Next to handle `.md` and `.mdx` files. * Add VSCode extension recommendation * Disabled TypeScript strict mode for now * Add prettier * Apply Prettier to all files * Make sure to use correct Node version * Add basic implementation for `MDXRemote` * Add experimental Rust MDX parser * Add `/public` * Add SASS support * Remove default pages and styling * Convert to module This allows to use `import/export` syntax * Add import for custom components * Add ability to load plugins * Extract function This will make the next commit easier to read * Allow to handle directories for page creation * Refactoring * Allow to parse subfolders for pages * Extract logic * Redirect `index.mdx` to parent directory * Disabled ESLint during builds * Disabled typescript during build * Remove Gatsby from `README.md` * Rephrase Docker part of `README.md` * Update project structure in `README.md` * Move and rename plugins * Update plugin for wrapping sections * Add dependencies for plugin * Use plugin * Rename wrapper type * Simplify unnessary adding of id to sections The slugified section ids are useless, because they can not be referenced anywhere anyway. The navigation only works if the section has the same id as the heading. * Add plugin for custom attributes on Markdown elements * Add plugin to readd support for tables * Add plugin to fix problem with wrapped images For more details see this issue: https://github.com/mdx-js/mdx/issues/1798 * Add necessary meta data to pages * Install necessary dependencies * Remove outdated MDX handling * Remove reliance on `InlineList` * Use existing Remark components * Remove unallowed heading Before `h1` components where not overwritten and would never have worked and they aren't used anywhere either. * Add missing components to MDX * Add correct styling * Fix broken list * Fix broken CSS classes * Implement layout * Fix links * Fix broken images * Fix pattern image * Fix heading attributes * Rename heading attribute `new` was causing some weird issue, so renaming it to `version` * Update comment syntax in MDX * Merge imports * Fix markdown rendering inside components * Add model pages * Simplify anchors * Fix default value for theme * Add Universe index page * Add Universe categories * Add Universe projects * Fix Next problem with copy Next complains when the server renders something different then the client, therfor we move the differing logic to `useEffect` * Fix improper component nesting Next doesn't allow block elements inside a `<p>` * Replace landing page MDX with page component * Remove inlined iframe content * Remove ability to inline HTML content in iFrames * Remove MDX imports * Fix problem with image inside link in MDX * Escape character for MDX * Fix unescaped characters in MDX * Fix headings with logo * Allow to export static HTML pages * Add prebuild script This command is automatically run by Next * Replace `svg-loader` with `react-inlinesvg` `svg-loader` is no longer maintained * Fix ESLint `react-hooks/exhaustive-deps` * Fix dropdowns * Change code language from `cli` to `bash` * Remove unnessary language `none` * Fix invalid code language `markdown_` with an underscore was used to basically turn of syntax highlighting, but using unknown languages know throws an error. * Enable code blocks plugin * Readd `InlineCode` component MDX2 removed the `inlineCode` component > The special component name `inlineCode` was removed, we recommend to use `pre` for the block version of code, and code for both the block and inline versions Source: https://mdxjs.com/migrating/v2/#update-mdx-content * Remove unused code * Extract function to own file * Fix code syntax highlighting * Update syntax for code block meta data * Remove unused prop * Fix internal link recognition There is a problem with regex between Node and browser, and since Next runs the component on both, this create an error. `Prop `rel` did not match. Server: "null" Client: "noopener nofollow noreferrer"` This simplifies the implementation and fixes the above error. * Replace `react-helmet` with `next/head` * Fix `className` problem for JSX component * Fix broken bold markdown * Convert file to `.mjs` to be used by Node process * Add plugin to replace strings * Fix custom table row styling * Fix problem with `span` inside inline `code` React doesn't allow a `span` inside an inline `code` element and throws an error in dev mode. * Add `_document` to be able to customize `<html>` and `<body>` * Add `lang="en"` * Store Netlify settings in file This way we don't need to update via Netlify UI, which can be tricky if changing build settings. * Add sitemap * Add Smartypants * Add PWA support * Add `manifest.webmanifest` * Fix bug with anchor links after reloading There was no need for the previous implementation, since the browser handles this nativly. Additional the manual scrolling into view was actually broken, because the heading would disappear behind the menu bar. * Rename custom event I was googeling for ages to find out what kind of event `inview` is, only to figure out it was a custom event with a name that sounds pretty much like a native one. 🫠 * Fix missing comment syntax highlighting * Refactor Quickstart component The previous implementation was hidding the irrelevant lines via data-props and dynamically generated CSS. This created problems with Next and was also hard to follow. CSS was used to do what React is supposed to handle. The new implementation simplfy filters the list of children (React elements) via their props. * Fix syntax highlighting for Training Quickstart * Unify code rendering * Improve error logging in Juniper * Fix Juniper component * Automatically generate "Read Next" link * Add Plausible * Use recent DocSearch component and adjust styling * Fix images * Turn of image optimization > Image Optimization using Next.js' default loader is not compatible with `next export`. We currently deploy to Netlify via `next export` * Dont build pages starting with `_` * Remove unused files * Add Next plugin to Netlify * Fix button layout MDX automatically adds `p` tags around text on a new line and Prettier wants to put the text on a new line. Hacking with JSX string. * Add 404 page * Apply Prettier * Update Prettier for `package.json` Next sometimes wants to patch `package-lock.json`. The old Prettier setting indended with 4 spaces, but Next always indends with 2 spaces. Since `npm install` automatically uses the indendation from `package.json` for `package-lock.json` and to avoid the format switching back and forth, both files are now set to 2 spaces. * Apply Next patch to `package-lock.json` When starting the dev server Next would warn `warn - Found lockfile missing swc dependencies, patching...` and update the `package-lock.json`. These are the patched changes. * fix link Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * small backslash fixes * adjust to new style Co-authored-by: Marcus Blättermann <marcus@essenmitsosse.de>
2023-01-11 16:30:07 +00:00
## SpanCategorizer.create_optimizer {id="create_optimizer",tag="method"}
Add SpanCategorizer component (#6747) * Draft spancat model * Add spancat model * Add test for extract_spans * Add extract_spans layer * Upd extract_spans * Add spancat model * Add test for spancat model * Upd spancat model * Update spancat component * Upd spancat * Update spancat model * Add quick spancat test * Import SpanCategorizer * Fix SpanCategorizer component * Import SpanGroup * Fix span extraction * Fix import * Fix import * Upd model * Update spancat models * Add scoring, update defaults * Update and add docs * Fix type * Update spacy/ml/extract_spans.py * Auto-format and fix import * Fix comment * Fix type * Fix type * Update website/docs/api/spancategorizer.md * Fix comment Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Better defense Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Fix labels list Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/ml/extract_spans.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/pipeline/spancat.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Set annotations during update * Set annotations in spancat * fix imports in test * Update spacy/pipeline/spancat.py * replace MaxoutLogistic with LinearLogistic * fix config * various small fixes * remove set_annotations parameter in update * use our beloved tupley format with recent support for doc.spans * bugfix to allow renaming the default span_key (scores weren't showing up) * use different key in docs example * change defaults to better-working parameters from project (WIP) * register spacy.extract_spans.v1 for legacy purposes * Upd dev version so can build wheel * layers instead of architectures for smaller building blocks * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Include additional scores from overrides in combined score weights * Parameterize spans key in scoring Parameterize the `SpanCategorizer` `spans_key` for scoring purposes so that it's possible to evaluate multiple `spancat` components in the same pipeline. * Use the (intentionally very short) default spans key `sc` in the `SpanCategorizer` * Adjust the default score weights to include the default key * Adjust the scorer to use `spans_{spans_key}` as the prefix for the returned score * Revert addition of `attr_name` argument to `score_spans` and adjust the key in the `getter` instead. Note that for `spancat` components with a custom `span_key`, the score weights currently need to be modified manually in `[training.score_weights]` for them to be available during training. To suppress the default score weights `spans_sc_p/r/f` during training, set them to `null` in `[training.score_weights]`. * Update website/docs/api/scorer.md * Fix scorer for spans key containing underscore * Increment version * Add Spans to Evaluate CLI (#8439) * Add Spans to Evaluate CLI * Change to spans_key * Add spans per_type output Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Fix spancat GPU issues (#8455) * Fix GPU issues * Require thinc >=8.0.6 * Switch to glorot_uniform_init * Fix and test ngram suggester * Include final ngram in doc for all sizes * Fix ngrams for docs of the same length as ngram size * Handle batches of docs that result in no ngrams * Add tests Co-authored-by: Ines Montani <ines@ines.io> Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> Co-authored-by: Nirant <NirantK@users.noreply.github.com>
2021-06-24 10:35:27 +00:00
Create an optimizer for the pipeline component.
> #### Example
>
> ```python
> spancat = nlp.add_pipe("spancat")
> optimizer = spancat.create_optimizer()
> ```
| Name | Description |
| ----------- | ---------------------------- |
| **RETURNS** | The optimizer. ~~Optimizer~~ |
Website migration from Gatsby to Next (#12058) * Rename all MDX file to `.mdx` * Lock current node version (#11885) * Apply Prettier (#11996) * Minor website fixes (#11974) [ci skip] * fix table * Migrate to Next WEB-17 (#12005) * Initial commit * Run `npx create-next-app@13 next-blog` * Install MDX packages Following: https://github.com/vercel/next.js/blob/77b5f79a4dff453abb62346bf75b14d859539b81/packages/next-mdx/readme.md * Add MDX to Next * Allow Next to handle `.md` and `.mdx` files. * Add VSCode extension recommendation * Disabled TypeScript strict mode for now * Add prettier * Apply Prettier to all files * Make sure to use correct Node version * Add basic implementation for `MDXRemote` * Add experimental Rust MDX parser * Add `/public` * Add SASS support * Remove default pages and styling * Convert to module This allows to use `import/export` syntax * Add import for custom components * Add ability to load plugins * Extract function This will make the next commit easier to read * Allow to handle directories for page creation * Refactoring * Allow to parse subfolders for pages * Extract logic * Redirect `index.mdx` to parent directory * Disabled ESLint during builds * Disabled typescript during build * Remove Gatsby from `README.md` * Rephrase Docker part of `README.md` * Update project structure in `README.md` * Move and rename plugins * Update plugin for wrapping sections * Add dependencies for plugin * Use plugin * Rename wrapper type * Simplify unnessary adding of id to sections The slugified section ids are useless, because they can not be referenced anywhere anyway. The navigation only works if the section has the same id as the heading. * Add plugin for custom attributes on Markdown elements * Add plugin to readd support for tables * Add plugin to fix problem with wrapped images For more details see this issue: https://github.com/mdx-js/mdx/issues/1798 * Add necessary meta data to pages * Install necessary dependencies * Remove outdated MDX handling * Remove reliance on `InlineList` * Use existing Remark components * Remove unallowed heading Before `h1` components where not overwritten and would never have worked and they aren't used anywhere either. * Add missing components to MDX * Add correct styling * Fix broken list * Fix broken CSS classes * Implement layout * Fix links * Fix broken images * Fix pattern image * Fix heading attributes * Rename heading attribute `new` was causing some weird issue, so renaming it to `version` * Update comment syntax in MDX * Merge imports * Fix markdown rendering inside components * Add model pages * Simplify anchors * Fix default value for theme * Add Universe index page * Add Universe categories * Add Universe projects * Fix Next problem with copy Next complains when the server renders something different then the client, therfor we move the differing logic to `useEffect` * Fix improper component nesting Next doesn't allow block elements inside a `<p>` * Replace landing page MDX with page component * Remove inlined iframe content * Remove ability to inline HTML content in iFrames * Remove MDX imports * Fix problem with image inside link in MDX * Escape character for MDX * Fix unescaped characters in MDX * Fix headings with logo * Allow to export static HTML pages * Add prebuild script This command is automatically run by Next * Replace `svg-loader` with `react-inlinesvg` `svg-loader` is no longer maintained * Fix ESLint `react-hooks/exhaustive-deps` * Fix dropdowns * Change code language from `cli` to `bash` * Remove unnessary language `none` * Fix invalid code language `markdown_` with an underscore was used to basically turn of syntax highlighting, but using unknown languages know throws an error. * Enable code blocks plugin * Readd `InlineCode` component MDX2 removed the `inlineCode` component > The special component name `inlineCode` was removed, we recommend to use `pre` for the block version of code, and code for both the block and inline versions Source: https://mdxjs.com/migrating/v2/#update-mdx-content * Remove unused code * Extract function to own file * Fix code syntax highlighting * Update syntax for code block meta data * Remove unused prop * Fix internal link recognition There is a problem with regex between Node and browser, and since Next runs the component on both, this create an error. `Prop `rel` did not match. Server: "null" Client: "noopener nofollow noreferrer"` This simplifies the implementation and fixes the above error. * Replace `react-helmet` with `next/head` * Fix `className` problem for JSX component * Fix broken bold markdown * Convert file to `.mjs` to be used by Node process * Add plugin to replace strings * Fix custom table row styling * Fix problem with `span` inside inline `code` React doesn't allow a `span` inside an inline `code` element and throws an error in dev mode. * Add `_document` to be able to customize `<html>` and `<body>` * Add `lang="en"` * Store Netlify settings in file This way we don't need to update via Netlify UI, which can be tricky if changing build settings. * Add sitemap * Add Smartypants * Add PWA support * Add `manifest.webmanifest` * Fix bug with anchor links after reloading There was no need for the previous implementation, since the browser handles this nativly. Additional the manual scrolling into view was actually broken, because the heading would disappear behind the menu bar. * Rename custom event I was googeling for ages to find out what kind of event `inview` is, only to figure out it was a custom event with a name that sounds pretty much like a native one. 🫠 * Fix missing comment syntax highlighting * Refactor Quickstart component The previous implementation was hidding the irrelevant lines via data-props and dynamically generated CSS. This created problems with Next and was also hard to follow. CSS was used to do what React is supposed to handle. The new implementation simplfy filters the list of children (React elements) via their props. * Fix syntax highlighting for Training Quickstart * Unify code rendering * Improve error logging in Juniper * Fix Juniper component * Automatically generate "Read Next" link * Add Plausible * Use recent DocSearch component and adjust styling * Fix images * Turn of image optimization > Image Optimization using Next.js' default loader is not compatible with `next export`. We currently deploy to Netlify via `next export` * Dont build pages starting with `_` * Remove unused files * Add Next plugin to Netlify * Fix button layout MDX automatically adds `p` tags around text on a new line and Prettier wants to put the text on a new line. Hacking with JSX string. * Add 404 page * Apply Prettier * Update Prettier for `package.json` Next sometimes wants to patch `package-lock.json`. The old Prettier setting indended with 4 spaces, but Next always indends with 2 spaces. Since `npm install` automatically uses the indendation from `package.json` for `package-lock.json` and to avoid the format switching back and forth, both files are now set to 2 spaces. * Apply Next patch to `package-lock.json` When starting the dev server Next would warn `warn - Found lockfile missing swc dependencies, patching...` and update the `package-lock.json`. These are the patched changes. * fix link Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * small backslash fixes * adjust to new style Co-authored-by: Marcus Blättermann <marcus@essenmitsosse.de>
2023-01-11 16:30:07 +00:00
## SpanCategorizer.use_params {id="use_params",tag="method, contextmanager"}
Add SpanCategorizer component (#6747) * Draft spancat model * Add spancat model * Add test for extract_spans * Add extract_spans layer * Upd extract_spans * Add spancat model * Add test for spancat model * Upd spancat model * Update spancat component * Upd spancat * Update spancat model * Add quick spancat test * Import SpanCategorizer * Fix SpanCategorizer component * Import SpanGroup * Fix span extraction * Fix import * Fix import * Upd model * Update spancat models * Add scoring, update defaults * Update and add docs * Fix type * Update spacy/ml/extract_spans.py * Auto-format and fix import * Fix comment * Fix type * Fix type * Update website/docs/api/spancategorizer.md * Fix comment Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Better defense Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Fix labels list Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/ml/extract_spans.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/pipeline/spancat.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Set annotations during update * Set annotations in spancat * fix imports in test * Update spacy/pipeline/spancat.py * replace MaxoutLogistic with LinearLogistic * fix config * various small fixes * remove set_annotations parameter in update * use our beloved tupley format with recent support for doc.spans * bugfix to allow renaming the default span_key (scores weren't showing up) * use different key in docs example * change defaults to better-working parameters from project (WIP) * register spacy.extract_spans.v1 for legacy purposes * Upd dev version so can build wheel * layers instead of architectures for smaller building blocks * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Include additional scores from overrides in combined score weights * Parameterize spans key in scoring Parameterize the `SpanCategorizer` `spans_key` for scoring purposes so that it's possible to evaluate multiple `spancat` components in the same pipeline. * Use the (intentionally very short) default spans key `sc` in the `SpanCategorizer` * Adjust the default score weights to include the default key * Adjust the scorer to use `spans_{spans_key}` as the prefix for the returned score * Revert addition of `attr_name` argument to `score_spans` and adjust the key in the `getter` instead. Note that for `spancat` components with a custom `span_key`, the score weights currently need to be modified manually in `[training.score_weights]` for them to be available during training. To suppress the default score weights `spans_sc_p/r/f` during training, set them to `null` in `[training.score_weights]`. * Update website/docs/api/scorer.md * Fix scorer for spans key containing underscore * Increment version * Add Spans to Evaluate CLI (#8439) * Add Spans to Evaluate CLI * Change to spans_key * Add spans per_type output Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Fix spancat GPU issues (#8455) * Fix GPU issues * Require thinc >=8.0.6 * Switch to glorot_uniform_init * Fix and test ngram suggester * Include final ngram in doc for all sizes * Fix ngrams for docs of the same length as ngram size * Handle batches of docs that result in no ngrams * Add tests Co-authored-by: Ines Montani <ines@ines.io> Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> Co-authored-by: Nirant <NirantK@users.noreply.github.com>
2021-06-24 10:35:27 +00:00
Modify the pipe's model to use the given parameter values.
> #### Example
>
> ```python
> spancat = nlp.add_pipe("spancat")
> with spancat.use_params(optimizer.averages):
> spancat.to_disk("/best_model")
> ```
| Name | Description |
| -------- | -------------------------------------------------- |
| `params` | The parameter values to use in the model. ~~dict~~ |
Website migration from Gatsby to Next (#12058) * Rename all MDX file to `.mdx` * Lock current node version (#11885) * Apply Prettier (#11996) * Minor website fixes (#11974) [ci skip] * fix table * Migrate to Next WEB-17 (#12005) * Initial commit * Run `npx create-next-app@13 next-blog` * Install MDX packages Following: https://github.com/vercel/next.js/blob/77b5f79a4dff453abb62346bf75b14d859539b81/packages/next-mdx/readme.md * Add MDX to Next * Allow Next to handle `.md` and `.mdx` files. * Add VSCode extension recommendation * Disabled TypeScript strict mode for now * Add prettier * Apply Prettier to all files * Make sure to use correct Node version * Add basic implementation for `MDXRemote` * Add experimental Rust MDX parser * Add `/public` * Add SASS support * Remove default pages and styling * Convert to module This allows to use `import/export` syntax * Add import for custom components * Add ability to load plugins * Extract function This will make the next commit easier to read * Allow to handle directories for page creation * Refactoring * Allow to parse subfolders for pages * Extract logic * Redirect `index.mdx` to parent directory * Disabled ESLint during builds * Disabled typescript during build * Remove Gatsby from `README.md` * Rephrase Docker part of `README.md` * Update project structure in `README.md` * Move and rename plugins * Update plugin for wrapping sections * Add dependencies for plugin * Use plugin * Rename wrapper type * Simplify unnessary adding of id to sections The slugified section ids are useless, because they can not be referenced anywhere anyway. The navigation only works if the section has the same id as the heading. * Add plugin for custom attributes on Markdown elements * Add plugin to readd support for tables * Add plugin to fix problem with wrapped images For more details see this issue: https://github.com/mdx-js/mdx/issues/1798 * Add necessary meta data to pages * Install necessary dependencies * Remove outdated MDX handling * Remove reliance on `InlineList` * Use existing Remark components * Remove unallowed heading Before `h1` components where not overwritten and would never have worked and they aren't used anywhere either. * Add missing components to MDX * Add correct styling * Fix broken list * Fix broken CSS classes * Implement layout * Fix links * Fix broken images * Fix pattern image * Fix heading attributes * Rename heading attribute `new` was causing some weird issue, so renaming it to `version` * Update comment syntax in MDX * Merge imports * Fix markdown rendering inside components * Add model pages * Simplify anchors * Fix default value for theme * Add Universe index page * Add Universe categories * Add Universe projects * Fix Next problem with copy Next complains when the server renders something different then the client, therfor we move the differing logic to `useEffect` * Fix improper component nesting Next doesn't allow block elements inside a `<p>` * Replace landing page MDX with page component * Remove inlined iframe content * Remove ability to inline HTML content in iFrames * Remove MDX imports * Fix problem with image inside link in MDX * Escape character for MDX * Fix unescaped characters in MDX * Fix headings with logo * Allow to export static HTML pages * Add prebuild script This command is automatically run by Next * Replace `svg-loader` with `react-inlinesvg` `svg-loader` is no longer maintained * Fix ESLint `react-hooks/exhaustive-deps` * Fix dropdowns * Change code language from `cli` to `bash` * Remove unnessary language `none` * Fix invalid code language `markdown_` with an underscore was used to basically turn of syntax highlighting, but using unknown languages know throws an error. * Enable code blocks plugin * Readd `InlineCode` component MDX2 removed the `inlineCode` component > The special component name `inlineCode` was removed, we recommend to use `pre` for the block version of code, and code for both the block and inline versions Source: https://mdxjs.com/migrating/v2/#update-mdx-content * Remove unused code * Extract function to own file * Fix code syntax highlighting * Update syntax for code block meta data * Remove unused prop * Fix internal link recognition There is a problem with regex between Node and browser, and since Next runs the component on both, this create an error. `Prop `rel` did not match. Server: "null" Client: "noopener nofollow noreferrer"` This simplifies the implementation and fixes the above error. * Replace `react-helmet` with `next/head` * Fix `className` problem for JSX component * Fix broken bold markdown * Convert file to `.mjs` to be used by Node process * Add plugin to replace strings * Fix custom table row styling * Fix problem with `span` inside inline `code` React doesn't allow a `span` inside an inline `code` element and throws an error in dev mode. * Add `_document` to be able to customize `<html>` and `<body>` * Add `lang="en"` * Store Netlify settings in file This way we don't need to update via Netlify UI, which can be tricky if changing build settings. * Add sitemap * Add Smartypants * Add PWA support * Add `manifest.webmanifest` * Fix bug with anchor links after reloading There was no need for the previous implementation, since the browser handles this nativly. Additional the manual scrolling into view was actually broken, because the heading would disappear behind the menu bar. * Rename custom event I was googeling for ages to find out what kind of event `inview` is, only to figure out it was a custom event with a name that sounds pretty much like a native one. 🫠 * Fix missing comment syntax highlighting * Refactor Quickstart component The previous implementation was hidding the irrelevant lines via data-props and dynamically generated CSS. This created problems with Next and was also hard to follow. CSS was used to do what React is supposed to handle. The new implementation simplfy filters the list of children (React elements) via their props. * Fix syntax highlighting for Training Quickstart * Unify code rendering * Improve error logging in Juniper * Fix Juniper component * Automatically generate "Read Next" link * Add Plausible * Use recent DocSearch component and adjust styling * Fix images * Turn of image optimization > Image Optimization using Next.js' default loader is not compatible with `next export`. We currently deploy to Netlify via `next export` * Dont build pages starting with `_` * Remove unused files * Add Next plugin to Netlify * Fix button layout MDX automatically adds `p` tags around text on a new line and Prettier wants to put the text on a new line. Hacking with JSX string. * Add 404 page * Apply Prettier * Update Prettier for `package.json` Next sometimes wants to patch `package-lock.json`. The old Prettier setting indended with 4 spaces, but Next always indends with 2 spaces. Since `npm install` automatically uses the indendation from `package.json` for `package-lock.json` and to avoid the format switching back and forth, both files are now set to 2 spaces. * Apply Next patch to `package-lock.json` When starting the dev server Next would warn `warn - Found lockfile missing swc dependencies, patching...` and update the `package-lock.json`. These are the patched changes. * fix link Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * small backslash fixes * adjust to new style Co-authored-by: Marcus Blättermann <marcus@essenmitsosse.de>
2023-01-11 16:30:07 +00:00
## SpanCategorizer.add_label {id="add_label",tag="method"}
Add SpanCategorizer component (#6747) * Draft spancat model * Add spancat model * Add test for extract_spans * Add extract_spans layer * Upd extract_spans * Add spancat model * Add test for spancat model * Upd spancat model * Update spancat component * Upd spancat * Update spancat model * Add quick spancat test * Import SpanCategorizer * Fix SpanCategorizer component * Import SpanGroup * Fix span extraction * Fix import * Fix import * Upd model * Update spancat models * Add scoring, update defaults * Update and add docs * Fix type * Update spacy/ml/extract_spans.py * Auto-format and fix import * Fix comment * Fix type * Fix type * Update website/docs/api/spancategorizer.md * Fix comment Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Better defense Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Fix labels list Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/ml/extract_spans.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/pipeline/spancat.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Set annotations during update * Set annotations in spancat * fix imports in test * Update spacy/pipeline/spancat.py * replace MaxoutLogistic with LinearLogistic * fix config * various small fixes * remove set_annotations parameter in update * use our beloved tupley format with recent support for doc.spans * bugfix to allow renaming the default span_key (scores weren't showing up) * use different key in docs example * change defaults to better-working parameters from project (WIP) * register spacy.extract_spans.v1 for legacy purposes * Upd dev version so can build wheel * layers instead of architectures for smaller building blocks * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Include additional scores from overrides in combined score weights * Parameterize spans key in scoring Parameterize the `SpanCategorizer` `spans_key` for scoring purposes so that it's possible to evaluate multiple `spancat` components in the same pipeline. * Use the (intentionally very short) default spans key `sc` in the `SpanCategorizer` * Adjust the default score weights to include the default key * Adjust the scorer to use `spans_{spans_key}` as the prefix for the returned score * Revert addition of `attr_name` argument to `score_spans` and adjust the key in the `getter` instead. Note that for `spancat` components with a custom `span_key`, the score weights currently need to be modified manually in `[training.score_weights]` for them to be available during training. To suppress the default score weights `spans_sc_p/r/f` during training, set them to `null` in `[training.score_weights]`. * Update website/docs/api/scorer.md * Fix scorer for spans key containing underscore * Increment version * Add Spans to Evaluate CLI (#8439) * Add Spans to Evaluate CLI * Change to spans_key * Add spans per_type output Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Fix spancat GPU issues (#8455) * Fix GPU issues * Require thinc >=8.0.6 * Switch to glorot_uniform_init * Fix and test ngram suggester * Include final ngram in doc for all sizes * Fix ngrams for docs of the same length as ngram size * Handle batches of docs that result in no ngrams * Add tests Co-authored-by: Ines Montani <ines@ines.io> Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> Co-authored-by: Nirant <NirantK@users.noreply.github.com>
2021-06-24 10:35:27 +00:00
Add a new label to the pipe. Raises an error if the output dimension is already
set, or if the model has already been fully [initialized](#initialize). Note
that you don't have to call this method if you provide a **representative data
sample** to the [`initialize`](#initialize) method. In this case, all labels
found in the sample will be automatically added to the model, and the output
dimension will be [inferred](/usage/layers-architectures#thinc-shape-inference)
automatically.
> #### Example
>
> ```python
> spancat = nlp.add_pipe("spancat")
> spancat.add_label("MY_LABEL")
> ```
| Name | Description |
| ----------- | ----------------------------------------------------------- |
| `label` | The label to add. ~~str~~ |
| **RETURNS** | `0` if the label is already present, otherwise `1`. ~~int~~ |
Website migration from Gatsby to Next (#12058) * Rename all MDX file to `.mdx` * Lock current node version (#11885) * Apply Prettier (#11996) * Minor website fixes (#11974) [ci skip] * fix table * Migrate to Next WEB-17 (#12005) * Initial commit * Run `npx create-next-app@13 next-blog` * Install MDX packages Following: https://github.com/vercel/next.js/blob/77b5f79a4dff453abb62346bf75b14d859539b81/packages/next-mdx/readme.md * Add MDX to Next * Allow Next to handle `.md` and `.mdx` files. * Add VSCode extension recommendation * Disabled TypeScript strict mode for now * Add prettier * Apply Prettier to all files * Make sure to use correct Node version * Add basic implementation for `MDXRemote` * Add experimental Rust MDX parser * Add `/public` * Add SASS support * Remove default pages and styling * Convert to module This allows to use `import/export` syntax * Add import for custom components * Add ability to load plugins * Extract function This will make the next commit easier to read * Allow to handle directories for page creation * Refactoring * Allow to parse subfolders for pages * Extract logic * Redirect `index.mdx` to parent directory * Disabled ESLint during builds * Disabled typescript during build * Remove Gatsby from `README.md` * Rephrase Docker part of `README.md` * Update project structure in `README.md` * Move and rename plugins * Update plugin for wrapping sections * Add dependencies for plugin * Use plugin * Rename wrapper type * Simplify unnessary adding of id to sections The slugified section ids are useless, because they can not be referenced anywhere anyway. The navigation only works if the section has the same id as the heading. * Add plugin for custom attributes on Markdown elements * Add plugin to readd support for tables * Add plugin to fix problem with wrapped images For more details see this issue: https://github.com/mdx-js/mdx/issues/1798 * Add necessary meta data to pages * Install necessary dependencies * Remove outdated MDX handling * Remove reliance on `InlineList` * Use existing Remark components * Remove unallowed heading Before `h1` components where not overwritten and would never have worked and they aren't used anywhere either. * Add missing components to MDX * Add correct styling * Fix broken list * Fix broken CSS classes * Implement layout * Fix links * Fix broken images * Fix pattern image * Fix heading attributes * Rename heading attribute `new` was causing some weird issue, so renaming it to `version` * Update comment syntax in MDX * Merge imports * Fix markdown rendering inside components * Add model pages * Simplify anchors * Fix default value for theme * Add Universe index page * Add Universe categories * Add Universe projects * Fix Next problem with copy Next complains when the server renders something different then the client, therfor we move the differing logic to `useEffect` * Fix improper component nesting Next doesn't allow block elements inside a `<p>` * Replace landing page MDX with page component * Remove inlined iframe content * Remove ability to inline HTML content in iFrames * Remove MDX imports * Fix problem with image inside link in MDX * Escape character for MDX * Fix unescaped characters in MDX * Fix headings with logo * Allow to export static HTML pages * Add prebuild script This command is automatically run by Next * Replace `svg-loader` with `react-inlinesvg` `svg-loader` is no longer maintained * Fix ESLint `react-hooks/exhaustive-deps` * Fix dropdowns * Change code language from `cli` to `bash` * Remove unnessary language `none` * Fix invalid code language `markdown_` with an underscore was used to basically turn of syntax highlighting, but using unknown languages know throws an error. * Enable code blocks plugin * Readd `InlineCode` component MDX2 removed the `inlineCode` component > The special component name `inlineCode` was removed, we recommend to use `pre` for the block version of code, and code for both the block and inline versions Source: https://mdxjs.com/migrating/v2/#update-mdx-content * Remove unused code * Extract function to own file * Fix code syntax highlighting * Update syntax for code block meta data * Remove unused prop * Fix internal link recognition There is a problem with regex between Node and browser, and since Next runs the component on both, this create an error. `Prop `rel` did not match. Server: "null" Client: "noopener nofollow noreferrer"` This simplifies the implementation and fixes the above error. * Replace `react-helmet` with `next/head` * Fix `className` problem for JSX component * Fix broken bold markdown * Convert file to `.mjs` to be used by Node process * Add plugin to replace strings * Fix custom table row styling * Fix problem with `span` inside inline `code` React doesn't allow a `span` inside an inline `code` element and throws an error in dev mode. * Add `_document` to be able to customize `<html>` and `<body>` * Add `lang="en"` * Store Netlify settings in file This way we don't need to update via Netlify UI, which can be tricky if changing build settings. * Add sitemap * Add Smartypants * Add PWA support * Add `manifest.webmanifest` * Fix bug with anchor links after reloading There was no need for the previous implementation, since the browser handles this nativly. Additional the manual scrolling into view was actually broken, because the heading would disappear behind the menu bar. * Rename custom event I was googeling for ages to find out what kind of event `inview` is, only to figure out it was a custom event with a name that sounds pretty much like a native one. 🫠 * Fix missing comment syntax highlighting * Refactor Quickstart component The previous implementation was hidding the irrelevant lines via data-props and dynamically generated CSS. This created problems with Next and was also hard to follow. CSS was used to do what React is supposed to handle. The new implementation simplfy filters the list of children (React elements) via their props. * Fix syntax highlighting for Training Quickstart * Unify code rendering * Improve error logging in Juniper * Fix Juniper component * Automatically generate "Read Next" link * Add Plausible * Use recent DocSearch component and adjust styling * Fix images * Turn of image optimization > Image Optimization using Next.js' default loader is not compatible with `next export`. We currently deploy to Netlify via `next export` * Dont build pages starting with `_` * Remove unused files * Add Next plugin to Netlify * Fix button layout MDX automatically adds `p` tags around text on a new line and Prettier wants to put the text on a new line. Hacking with JSX string. * Add 404 page * Apply Prettier * Update Prettier for `package.json` Next sometimes wants to patch `package-lock.json`. The old Prettier setting indended with 4 spaces, but Next always indends with 2 spaces. Since `npm install` automatically uses the indendation from `package.json` for `package-lock.json` and to avoid the format switching back and forth, both files are now set to 2 spaces. * Apply Next patch to `package-lock.json` When starting the dev server Next would warn `warn - Found lockfile missing swc dependencies, patching...` and update the `package-lock.json`. These are the patched changes. * fix link Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * small backslash fixes * adjust to new style Co-authored-by: Marcus Blättermann <marcus@essenmitsosse.de>
2023-01-11 16:30:07 +00:00
## SpanCategorizer.to_disk {id="to_disk",tag="method"}
Add SpanCategorizer component (#6747) * Draft spancat model * Add spancat model * Add test for extract_spans * Add extract_spans layer * Upd extract_spans * Add spancat model * Add test for spancat model * Upd spancat model * Update spancat component * Upd spancat * Update spancat model * Add quick spancat test * Import SpanCategorizer * Fix SpanCategorizer component * Import SpanGroup * Fix span extraction * Fix import * Fix import * Upd model * Update spancat models * Add scoring, update defaults * Update and add docs * Fix type * Update spacy/ml/extract_spans.py * Auto-format and fix import * Fix comment * Fix type * Fix type * Update website/docs/api/spancategorizer.md * Fix comment Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Better defense Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Fix labels list Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/ml/extract_spans.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/pipeline/spancat.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Set annotations during update * Set annotations in spancat * fix imports in test * Update spacy/pipeline/spancat.py * replace MaxoutLogistic with LinearLogistic * fix config * various small fixes * remove set_annotations parameter in update * use our beloved tupley format with recent support for doc.spans * bugfix to allow renaming the default span_key (scores weren't showing up) * use different key in docs example * change defaults to better-working parameters from project (WIP) * register spacy.extract_spans.v1 for legacy purposes * Upd dev version so can build wheel * layers instead of architectures for smaller building blocks * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Include additional scores from overrides in combined score weights * Parameterize spans key in scoring Parameterize the `SpanCategorizer` `spans_key` for scoring purposes so that it's possible to evaluate multiple `spancat` components in the same pipeline. * Use the (intentionally very short) default spans key `sc` in the `SpanCategorizer` * Adjust the default score weights to include the default key * Adjust the scorer to use `spans_{spans_key}` as the prefix for the returned score * Revert addition of `attr_name` argument to `score_spans` and adjust the key in the `getter` instead. Note that for `spancat` components with a custom `span_key`, the score weights currently need to be modified manually in `[training.score_weights]` for them to be available during training. To suppress the default score weights `spans_sc_p/r/f` during training, set them to `null` in `[training.score_weights]`. * Update website/docs/api/scorer.md * Fix scorer for spans key containing underscore * Increment version * Add Spans to Evaluate CLI (#8439) * Add Spans to Evaluate CLI * Change to spans_key * Add spans per_type output Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Fix spancat GPU issues (#8455) * Fix GPU issues * Require thinc >=8.0.6 * Switch to glorot_uniform_init * Fix and test ngram suggester * Include final ngram in doc for all sizes * Fix ngrams for docs of the same length as ngram size * Handle batches of docs that result in no ngrams * Add tests Co-authored-by: Ines Montani <ines@ines.io> Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> Co-authored-by: Nirant <NirantK@users.noreply.github.com>
2021-06-24 10:35:27 +00:00
Serialize the pipe to disk.
> #### Example
>
> ```python
> spancat = nlp.add_pipe("spancat")
> spancat.to_disk("/path/to/spancat")
> ```
| Name | Description |
| -------------- | ------------------------------------------------------------------------------------------------------------------------------------------ |
| `path` | A path to a directory, which will be created if it doesn't exist. Paths may be either strings or `Path`-like objects. ~~Union[str, Path]~~ |
| _keyword-only_ | |
| `exclude` | String names of [serialization fields](#serialization-fields) to exclude. ~~Iterable[str]~~ |
Website migration from Gatsby to Next (#12058) * Rename all MDX file to `.mdx` * Lock current node version (#11885) * Apply Prettier (#11996) * Minor website fixes (#11974) [ci skip] * fix table * Migrate to Next WEB-17 (#12005) * Initial commit * Run `npx create-next-app@13 next-blog` * Install MDX packages Following: https://github.com/vercel/next.js/blob/77b5f79a4dff453abb62346bf75b14d859539b81/packages/next-mdx/readme.md * Add MDX to Next * Allow Next to handle `.md` and `.mdx` files. * Add VSCode extension recommendation * Disabled TypeScript strict mode for now * Add prettier * Apply Prettier to all files * Make sure to use correct Node version * Add basic implementation for `MDXRemote` * Add experimental Rust MDX parser * Add `/public` * Add SASS support * Remove default pages and styling * Convert to module This allows to use `import/export` syntax * Add import for custom components * Add ability to load plugins * Extract function This will make the next commit easier to read * Allow to handle directories for page creation * Refactoring * Allow to parse subfolders for pages * Extract logic * Redirect `index.mdx` to parent directory * Disabled ESLint during builds * Disabled typescript during build * Remove Gatsby from `README.md` * Rephrase Docker part of `README.md` * Update project structure in `README.md` * Move and rename plugins * Update plugin for wrapping sections * Add dependencies for plugin * Use plugin * Rename wrapper type * Simplify unnessary adding of id to sections The slugified section ids are useless, because they can not be referenced anywhere anyway. The navigation only works if the section has the same id as the heading. * Add plugin for custom attributes on Markdown elements * Add plugin to readd support for tables * Add plugin to fix problem with wrapped images For more details see this issue: https://github.com/mdx-js/mdx/issues/1798 * Add necessary meta data to pages * Install necessary dependencies * Remove outdated MDX handling * Remove reliance on `InlineList` * Use existing Remark components * Remove unallowed heading Before `h1` components where not overwritten and would never have worked and they aren't used anywhere either. * Add missing components to MDX * Add correct styling * Fix broken list * Fix broken CSS classes * Implement layout * Fix links * Fix broken images * Fix pattern image * Fix heading attributes * Rename heading attribute `new` was causing some weird issue, so renaming it to `version` * Update comment syntax in MDX * Merge imports * Fix markdown rendering inside components * Add model pages * Simplify anchors * Fix default value for theme * Add Universe index page * Add Universe categories * Add Universe projects * Fix Next problem with copy Next complains when the server renders something different then the client, therfor we move the differing logic to `useEffect` * Fix improper component nesting Next doesn't allow block elements inside a `<p>` * Replace landing page MDX with page component * Remove inlined iframe content * Remove ability to inline HTML content in iFrames * Remove MDX imports * Fix problem with image inside link in MDX * Escape character for MDX * Fix unescaped characters in MDX * Fix headings with logo * Allow to export static HTML pages * Add prebuild script This command is automatically run by Next * Replace `svg-loader` with `react-inlinesvg` `svg-loader` is no longer maintained * Fix ESLint `react-hooks/exhaustive-deps` * Fix dropdowns * Change code language from `cli` to `bash` * Remove unnessary language `none` * Fix invalid code language `markdown_` with an underscore was used to basically turn of syntax highlighting, but using unknown languages know throws an error. * Enable code blocks plugin * Readd `InlineCode` component MDX2 removed the `inlineCode` component > The special component name `inlineCode` was removed, we recommend to use `pre` for the block version of code, and code for both the block and inline versions Source: https://mdxjs.com/migrating/v2/#update-mdx-content * Remove unused code * Extract function to own file * Fix code syntax highlighting * Update syntax for code block meta data * Remove unused prop * Fix internal link recognition There is a problem with regex between Node and browser, and since Next runs the component on both, this create an error. `Prop `rel` did not match. Server: "null" Client: "noopener nofollow noreferrer"` This simplifies the implementation and fixes the above error. * Replace `react-helmet` with `next/head` * Fix `className` problem for JSX component * Fix broken bold markdown * Convert file to `.mjs` to be used by Node process * Add plugin to replace strings * Fix custom table row styling * Fix problem with `span` inside inline `code` React doesn't allow a `span` inside an inline `code` element and throws an error in dev mode. * Add `_document` to be able to customize `<html>` and `<body>` * Add `lang="en"` * Store Netlify settings in file This way we don't need to update via Netlify UI, which can be tricky if changing build settings. * Add sitemap * Add Smartypants * Add PWA support * Add `manifest.webmanifest` * Fix bug with anchor links after reloading There was no need for the previous implementation, since the browser handles this nativly. Additional the manual scrolling into view was actually broken, because the heading would disappear behind the menu bar. * Rename custom event I was googeling for ages to find out what kind of event `inview` is, only to figure out it was a custom event with a name that sounds pretty much like a native one. 🫠 * Fix missing comment syntax highlighting * Refactor Quickstart component The previous implementation was hidding the irrelevant lines via data-props and dynamically generated CSS. This created problems with Next and was also hard to follow. CSS was used to do what React is supposed to handle. The new implementation simplfy filters the list of children (React elements) via their props. * Fix syntax highlighting for Training Quickstart * Unify code rendering * Improve error logging in Juniper * Fix Juniper component * Automatically generate "Read Next" link * Add Plausible * Use recent DocSearch component and adjust styling * Fix images * Turn of image optimization > Image Optimization using Next.js' default loader is not compatible with `next export`. We currently deploy to Netlify via `next export` * Dont build pages starting with `_` * Remove unused files * Add Next plugin to Netlify * Fix button layout MDX automatically adds `p` tags around text on a new line and Prettier wants to put the text on a new line. Hacking with JSX string. * Add 404 page * Apply Prettier * Update Prettier for `package.json` Next sometimes wants to patch `package-lock.json`. The old Prettier setting indended with 4 spaces, but Next always indends with 2 spaces. Since `npm install` automatically uses the indendation from `package.json` for `package-lock.json` and to avoid the format switching back and forth, both files are now set to 2 spaces. * Apply Next patch to `package-lock.json` When starting the dev server Next would warn `warn - Found lockfile missing swc dependencies, patching...` and update the `package-lock.json`. These are the patched changes. * fix link Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * small backslash fixes * adjust to new style Co-authored-by: Marcus Blättermann <marcus@essenmitsosse.de>
2023-01-11 16:30:07 +00:00
## SpanCategorizer.from_disk {id="from_disk",tag="method"}
Add SpanCategorizer component (#6747) * Draft spancat model * Add spancat model * Add test for extract_spans * Add extract_spans layer * Upd extract_spans * Add spancat model * Add test for spancat model * Upd spancat model * Update spancat component * Upd spancat * Update spancat model * Add quick spancat test * Import SpanCategorizer * Fix SpanCategorizer component * Import SpanGroup * Fix span extraction * Fix import * Fix import * Upd model * Update spancat models * Add scoring, update defaults * Update and add docs * Fix type * Update spacy/ml/extract_spans.py * Auto-format and fix import * Fix comment * Fix type * Fix type * Update website/docs/api/spancategorizer.md * Fix comment Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Better defense Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Fix labels list Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/ml/extract_spans.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/pipeline/spancat.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Set annotations during update * Set annotations in spancat * fix imports in test * Update spacy/pipeline/spancat.py * replace MaxoutLogistic with LinearLogistic * fix config * various small fixes * remove set_annotations parameter in update * use our beloved tupley format with recent support for doc.spans * bugfix to allow renaming the default span_key (scores weren't showing up) * use different key in docs example * change defaults to better-working parameters from project (WIP) * register spacy.extract_spans.v1 for legacy purposes * Upd dev version so can build wheel * layers instead of architectures for smaller building blocks * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Include additional scores from overrides in combined score weights * Parameterize spans key in scoring Parameterize the `SpanCategorizer` `spans_key` for scoring purposes so that it's possible to evaluate multiple `spancat` components in the same pipeline. * Use the (intentionally very short) default spans key `sc` in the `SpanCategorizer` * Adjust the default score weights to include the default key * Adjust the scorer to use `spans_{spans_key}` as the prefix for the returned score * Revert addition of `attr_name` argument to `score_spans` and adjust the key in the `getter` instead. Note that for `spancat` components with a custom `span_key`, the score weights currently need to be modified manually in `[training.score_weights]` for them to be available during training. To suppress the default score weights `spans_sc_p/r/f` during training, set them to `null` in `[training.score_weights]`. * Update website/docs/api/scorer.md * Fix scorer for spans key containing underscore * Increment version * Add Spans to Evaluate CLI (#8439) * Add Spans to Evaluate CLI * Change to spans_key * Add spans per_type output Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Fix spancat GPU issues (#8455) * Fix GPU issues * Require thinc >=8.0.6 * Switch to glorot_uniform_init * Fix and test ngram suggester * Include final ngram in doc for all sizes * Fix ngrams for docs of the same length as ngram size * Handle batches of docs that result in no ngrams * Add tests Co-authored-by: Ines Montani <ines@ines.io> Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> Co-authored-by: Nirant <NirantK@users.noreply.github.com>
2021-06-24 10:35:27 +00:00
Load the pipe from disk. Modifies the object in place and returns it.
> #### Example
>
> ```python
> spancat = nlp.add_pipe("spancat")
> spancat.from_disk("/path/to/spancat")
> ```
| Name | Description |
| -------------- | ----------------------------------------------------------------------------------------------- |
| `path` | A path to a directory. Paths may be either strings or `Path`-like objects. ~~Union[str, Path]~~ |
| _keyword-only_ | |
| `exclude` | String names of [serialization fields](#serialization-fields) to exclude. ~~Iterable[str]~~ |
| **RETURNS** | The modified `SpanCategorizer` object. ~~SpanCategorizer~~ |
Website migration from Gatsby to Next (#12058) * Rename all MDX file to `.mdx` * Lock current node version (#11885) * Apply Prettier (#11996) * Minor website fixes (#11974) [ci skip] * fix table * Migrate to Next WEB-17 (#12005) * Initial commit * Run `npx create-next-app@13 next-blog` * Install MDX packages Following: https://github.com/vercel/next.js/blob/77b5f79a4dff453abb62346bf75b14d859539b81/packages/next-mdx/readme.md * Add MDX to Next * Allow Next to handle `.md` and `.mdx` files. * Add VSCode extension recommendation * Disabled TypeScript strict mode for now * Add prettier * Apply Prettier to all files * Make sure to use correct Node version * Add basic implementation for `MDXRemote` * Add experimental Rust MDX parser * Add `/public` * Add SASS support * Remove default pages and styling * Convert to module This allows to use `import/export` syntax * Add import for custom components * Add ability to load plugins * Extract function This will make the next commit easier to read * Allow to handle directories for page creation * Refactoring * Allow to parse subfolders for pages * Extract logic * Redirect `index.mdx` to parent directory * Disabled ESLint during builds * Disabled typescript during build * Remove Gatsby from `README.md` * Rephrase Docker part of `README.md` * Update project structure in `README.md` * Move and rename plugins * Update plugin for wrapping sections * Add dependencies for plugin * Use plugin * Rename wrapper type * Simplify unnessary adding of id to sections The slugified section ids are useless, because they can not be referenced anywhere anyway. The navigation only works if the section has the same id as the heading. * Add plugin for custom attributes on Markdown elements * Add plugin to readd support for tables * Add plugin to fix problem with wrapped images For more details see this issue: https://github.com/mdx-js/mdx/issues/1798 * Add necessary meta data to pages * Install necessary dependencies * Remove outdated MDX handling * Remove reliance on `InlineList` * Use existing Remark components * Remove unallowed heading Before `h1` components where not overwritten and would never have worked and they aren't used anywhere either. * Add missing components to MDX * Add correct styling * Fix broken list * Fix broken CSS classes * Implement layout * Fix links * Fix broken images * Fix pattern image * Fix heading attributes * Rename heading attribute `new` was causing some weird issue, so renaming it to `version` * Update comment syntax in MDX * Merge imports * Fix markdown rendering inside components * Add model pages * Simplify anchors * Fix default value for theme * Add Universe index page * Add Universe categories * Add Universe projects * Fix Next problem with copy Next complains when the server renders something different then the client, therfor we move the differing logic to `useEffect` * Fix improper component nesting Next doesn't allow block elements inside a `<p>` * Replace landing page MDX with page component * Remove inlined iframe content * Remove ability to inline HTML content in iFrames * Remove MDX imports * Fix problem with image inside link in MDX * Escape character for MDX * Fix unescaped characters in MDX * Fix headings with logo * Allow to export static HTML pages * Add prebuild script This command is automatically run by Next * Replace `svg-loader` with `react-inlinesvg` `svg-loader` is no longer maintained * Fix ESLint `react-hooks/exhaustive-deps` * Fix dropdowns * Change code language from `cli` to `bash` * Remove unnessary language `none` * Fix invalid code language `markdown_` with an underscore was used to basically turn of syntax highlighting, but using unknown languages know throws an error. * Enable code blocks plugin * Readd `InlineCode` component MDX2 removed the `inlineCode` component > The special component name `inlineCode` was removed, we recommend to use `pre` for the block version of code, and code for both the block and inline versions Source: https://mdxjs.com/migrating/v2/#update-mdx-content * Remove unused code * Extract function to own file * Fix code syntax highlighting * Update syntax for code block meta data * Remove unused prop * Fix internal link recognition There is a problem with regex between Node and browser, and since Next runs the component on both, this create an error. `Prop `rel` did not match. Server: "null" Client: "noopener nofollow noreferrer"` This simplifies the implementation and fixes the above error. * Replace `react-helmet` with `next/head` * Fix `className` problem for JSX component * Fix broken bold markdown * Convert file to `.mjs` to be used by Node process * Add plugin to replace strings * Fix custom table row styling * Fix problem with `span` inside inline `code` React doesn't allow a `span` inside an inline `code` element and throws an error in dev mode. * Add `_document` to be able to customize `<html>` and `<body>` * Add `lang="en"` * Store Netlify settings in file This way we don't need to update via Netlify UI, which can be tricky if changing build settings. * Add sitemap * Add Smartypants * Add PWA support * Add `manifest.webmanifest` * Fix bug with anchor links after reloading There was no need for the previous implementation, since the browser handles this nativly. Additional the manual scrolling into view was actually broken, because the heading would disappear behind the menu bar. * Rename custom event I was googeling for ages to find out what kind of event `inview` is, only to figure out it was a custom event with a name that sounds pretty much like a native one. 🫠 * Fix missing comment syntax highlighting * Refactor Quickstart component The previous implementation was hidding the irrelevant lines via data-props and dynamically generated CSS. This created problems with Next and was also hard to follow. CSS was used to do what React is supposed to handle. The new implementation simplfy filters the list of children (React elements) via their props. * Fix syntax highlighting for Training Quickstart * Unify code rendering * Improve error logging in Juniper * Fix Juniper component * Automatically generate "Read Next" link * Add Plausible * Use recent DocSearch component and adjust styling * Fix images * Turn of image optimization > Image Optimization using Next.js' default loader is not compatible with `next export`. We currently deploy to Netlify via `next export` * Dont build pages starting with `_` * Remove unused files * Add Next plugin to Netlify * Fix button layout MDX automatically adds `p` tags around text on a new line and Prettier wants to put the text on a new line. Hacking with JSX string. * Add 404 page * Apply Prettier * Update Prettier for `package.json` Next sometimes wants to patch `package-lock.json`. The old Prettier setting indended with 4 spaces, but Next always indends with 2 spaces. Since `npm install` automatically uses the indendation from `package.json` for `package-lock.json` and to avoid the format switching back and forth, both files are now set to 2 spaces. * Apply Next patch to `package-lock.json` When starting the dev server Next would warn `warn - Found lockfile missing swc dependencies, patching...` and update the `package-lock.json`. These are the patched changes. * fix link Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * small backslash fixes * adjust to new style Co-authored-by: Marcus Blättermann <marcus@essenmitsosse.de>
2023-01-11 16:30:07 +00:00
## SpanCategorizer.to_bytes {id="to_bytes",tag="method"}
Add SpanCategorizer component (#6747) * Draft spancat model * Add spancat model * Add test for extract_spans * Add extract_spans layer * Upd extract_spans * Add spancat model * Add test for spancat model * Upd spancat model * Update spancat component * Upd spancat * Update spancat model * Add quick spancat test * Import SpanCategorizer * Fix SpanCategorizer component * Import SpanGroup * Fix span extraction * Fix import * Fix import * Upd model * Update spancat models * Add scoring, update defaults * Update and add docs * Fix type * Update spacy/ml/extract_spans.py * Auto-format and fix import * Fix comment * Fix type * Fix type * Update website/docs/api/spancategorizer.md * Fix comment Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Better defense Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Fix labels list Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/ml/extract_spans.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/pipeline/spancat.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Set annotations during update * Set annotations in spancat * fix imports in test * Update spacy/pipeline/spancat.py * replace MaxoutLogistic with LinearLogistic * fix config * various small fixes * remove set_annotations parameter in update * use our beloved tupley format with recent support for doc.spans * bugfix to allow renaming the default span_key (scores weren't showing up) * use different key in docs example * change defaults to better-working parameters from project (WIP) * register spacy.extract_spans.v1 for legacy purposes * Upd dev version so can build wheel * layers instead of architectures for smaller building blocks * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Include additional scores from overrides in combined score weights * Parameterize spans key in scoring Parameterize the `SpanCategorizer` `spans_key` for scoring purposes so that it's possible to evaluate multiple `spancat` components in the same pipeline. * Use the (intentionally very short) default spans key `sc` in the `SpanCategorizer` * Adjust the default score weights to include the default key * Adjust the scorer to use `spans_{spans_key}` as the prefix for the returned score * Revert addition of `attr_name` argument to `score_spans` and adjust the key in the `getter` instead. Note that for `spancat` components with a custom `span_key`, the score weights currently need to be modified manually in `[training.score_weights]` for them to be available during training. To suppress the default score weights `spans_sc_p/r/f` during training, set them to `null` in `[training.score_weights]`. * Update website/docs/api/scorer.md * Fix scorer for spans key containing underscore * Increment version * Add Spans to Evaluate CLI (#8439) * Add Spans to Evaluate CLI * Change to spans_key * Add spans per_type output Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Fix spancat GPU issues (#8455) * Fix GPU issues * Require thinc >=8.0.6 * Switch to glorot_uniform_init * Fix and test ngram suggester * Include final ngram in doc for all sizes * Fix ngrams for docs of the same length as ngram size * Handle batches of docs that result in no ngrams * Add tests Co-authored-by: Ines Montani <ines@ines.io> Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> Co-authored-by: Nirant <NirantK@users.noreply.github.com>
2021-06-24 10:35:27 +00:00
> #### Example
>
> ```python
> spancat = nlp.add_pipe("spancat")
> spancat_bytes = spancat.to_bytes()
> ```
Serialize the pipe to a bytestring.
| Name | Description |
| -------------- | ------------------------------------------------------------------------------------------- |
| _keyword-only_ | |
| `exclude` | String names of [serialization fields](#serialization-fields) to exclude. ~~Iterable[str]~~ |
| **RETURNS** | The serialized form of the `SpanCategorizer` object. ~~bytes~~ |
Website migration from Gatsby to Next (#12058) * Rename all MDX file to `.mdx` * Lock current node version (#11885) * Apply Prettier (#11996) * Minor website fixes (#11974) [ci skip] * fix table * Migrate to Next WEB-17 (#12005) * Initial commit * Run `npx create-next-app@13 next-blog` * Install MDX packages Following: https://github.com/vercel/next.js/blob/77b5f79a4dff453abb62346bf75b14d859539b81/packages/next-mdx/readme.md * Add MDX to Next * Allow Next to handle `.md` and `.mdx` files. * Add VSCode extension recommendation * Disabled TypeScript strict mode for now * Add prettier * Apply Prettier to all files * Make sure to use correct Node version * Add basic implementation for `MDXRemote` * Add experimental Rust MDX parser * Add `/public` * Add SASS support * Remove default pages and styling * Convert to module This allows to use `import/export` syntax * Add import for custom components * Add ability to load plugins * Extract function This will make the next commit easier to read * Allow to handle directories for page creation * Refactoring * Allow to parse subfolders for pages * Extract logic * Redirect `index.mdx` to parent directory * Disabled ESLint during builds * Disabled typescript during build * Remove Gatsby from `README.md` * Rephrase Docker part of `README.md` * Update project structure in `README.md` * Move and rename plugins * Update plugin for wrapping sections * Add dependencies for plugin * Use plugin * Rename wrapper type * Simplify unnessary adding of id to sections The slugified section ids are useless, because they can not be referenced anywhere anyway. The navigation only works if the section has the same id as the heading. * Add plugin for custom attributes on Markdown elements * Add plugin to readd support for tables * Add plugin to fix problem with wrapped images For more details see this issue: https://github.com/mdx-js/mdx/issues/1798 * Add necessary meta data to pages * Install necessary dependencies * Remove outdated MDX handling * Remove reliance on `InlineList` * Use existing Remark components * Remove unallowed heading Before `h1` components where not overwritten and would never have worked and they aren't used anywhere either. * Add missing components to MDX * Add correct styling * Fix broken list * Fix broken CSS classes * Implement layout * Fix links * Fix broken images * Fix pattern image * Fix heading attributes * Rename heading attribute `new` was causing some weird issue, so renaming it to `version` * Update comment syntax in MDX * Merge imports * Fix markdown rendering inside components * Add model pages * Simplify anchors * Fix default value for theme * Add Universe index page * Add Universe categories * Add Universe projects * Fix Next problem with copy Next complains when the server renders something different then the client, therfor we move the differing logic to `useEffect` * Fix improper component nesting Next doesn't allow block elements inside a `<p>` * Replace landing page MDX with page component * Remove inlined iframe content * Remove ability to inline HTML content in iFrames * Remove MDX imports * Fix problem with image inside link in MDX * Escape character for MDX * Fix unescaped characters in MDX * Fix headings with logo * Allow to export static HTML pages * Add prebuild script This command is automatically run by Next * Replace `svg-loader` with `react-inlinesvg` `svg-loader` is no longer maintained * Fix ESLint `react-hooks/exhaustive-deps` * Fix dropdowns * Change code language from `cli` to `bash` * Remove unnessary language `none` * Fix invalid code language `markdown_` with an underscore was used to basically turn of syntax highlighting, but using unknown languages know throws an error. * Enable code blocks plugin * Readd `InlineCode` component MDX2 removed the `inlineCode` component > The special component name `inlineCode` was removed, we recommend to use `pre` for the block version of code, and code for both the block and inline versions Source: https://mdxjs.com/migrating/v2/#update-mdx-content * Remove unused code * Extract function to own file * Fix code syntax highlighting * Update syntax for code block meta data * Remove unused prop * Fix internal link recognition There is a problem with regex between Node and browser, and since Next runs the component on both, this create an error. `Prop `rel` did not match. Server: "null" Client: "noopener nofollow noreferrer"` This simplifies the implementation and fixes the above error. * Replace `react-helmet` with `next/head` * Fix `className` problem for JSX component * Fix broken bold markdown * Convert file to `.mjs` to be used by Node process * Add plugin to replace strings * Fix custom table row styling * Fix problem with `span` inside inline `code` React doesn't allow a `span` inside an inline `code` element and throws an error in dev mode. * Add `_document` to be able to customize `<html>` and `<body>` * Add `lang="en"` * Store Netlify settings in file This way we don't need to update via Netlify UI, which can be tricky if changing build settings. * Add sitemap * Add Smartypants * Add PWA support * Add `manifest.webmanifest` * Fix bug with anchor links after reloading There was no need for the previous implementation, since the browser handles this nativly. Additional the manual scrolling into view was actually broken, because the heading would disappear behind the menu bar. * Rename custom event I was googeling for ages to find out what kind of event `inview` is, only to figure out it was a custom event with a name that sounds pretty much like a native one. 🫠 * Fix missing comment syntax highlighting * Refactor Quickstart component The previous implementation was hidding the irrelevant lines via data-props and dynamically generated CSS. This created problems with Next and was also hard to follow. CSS was used to do what React is supposed to handle. The new implementation simplfy filters the list of children (React elements) via their props. * Fix syntax highlighting for Training Quickstart * Unify code rendering * Improve error logging in Juniper * Fix Juniper component * Automatically generate "Read Next" link * Add Plausible * Use recent DocSearch component and adjust styling * Fix images * Turn of image optimization > Image Optimization using Next.js' default loader is not compatible with `next export`. We currently deploy to Netlify via `next export` * Dont build pages starting with `_` * Remove unused files * Add Next plugin to Netlify * Fix button layout MDX automatically adds `p` tags around text on a new line and Prettier wants to put the text on a new line. Hacking with JSX string. * Add 404 page * Apply Prettier * Update Prettier for `package.json` Next sometimes wants to patch `package-lock.json`. The old Prettier setting indended with 4 spaces, but Next always indends with 2 spaces. Since `npm install` automatically uses the indendation from `package.json` for `package-lock.json` and to avoid the format switching back and forth, both files are now set to 2 spaces. * Apply Next patch to `package-lock.json` When starting the dev server Next would warn `warn - Found lockfile missing swc dependencies, patching...` and update the `package-lock.json`. These are the patched changes. * fix link Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * small backslash fixes * adjust to new style Co-authored-by: Marcus Blättermann <marcus@essenmitsosse.de>
2023-01-11 16:30:07 +00:00
## SpanCategorizer.from_bytes {id="from_bytes",tag="method"}
Add SpanCategorizer component (#6747) * Draft spancat model * Add spancat model * Add test for extract_spans * Add extract_spans layer * Upd extract_spans * Add spancat model * Add test for spancat model * Upd spancat model * Update spancat component * Upd spancat * Update spancat model * Add quick spancat test * Import SpanCategorizer * Fix SpanCategorizer component * Import SpanGroup * Fix span extraction * Fix import * Fix import * Upd model * Update spancat models * Add scoring, update defaults * Update and add docs * Fix type * Update spacy/ml/extract_spans.py * Auto-format and fix import * Fix comment * Fix type * Fix type * Update website/docs/api/spancategorizer.md * Fix comment Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Better defense Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Fix labels list Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/ml/extract_spans.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/pipeline/spancat.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Set annotations during update * Set annotations in spancat * fix imports in test * Update spacy/pipeline/spancat.py * replace MaxoutLogistic with LinearLogistic * fix config * various small fixes * remove set_annotations parameter in update * use our beloved tupley format with recent support for doc.spans * bugfix to allow renaming the default span_key (scores weren't showing up) * use different key in docs example * change defaults to better-working parameters from project (WIP) * register spacy.extract_spans.v1 for legacy purposes * Upd dev version so can build wheel * layers instead of architectures for smaller building blocks * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Include additional scores from overrides in combined score weights * Parameterize spans key in scoring Parameterize the `SpanCategorizer` `spans_key` for scoring purposes so that it's possible to evaluate multiple `spancat` components in the same pipeline. * Use the (intentionally very short) default spans key `sc` in the `SpanCategorizer` * Adjust the default score weights to include the default key * Adjust the scorer to use `spans_{spans_key}` as the prefix for the returned score * Revert addition of `attr_name` argument to `score_spans` and adjust the key in the `getter` instead. Note that for `spancat` components with a custom `span_key`, the score weights currently need to be modified manually in `[training.score_weights]` for them to be available during training. To suppress the default score weights `spans_sc_p/r/f` during training, set them to `null` in `[training.score_weights]`. * Update website/docs/api/scorer.md * Fix scorer for spans key containing underscore * Increment version * Add Spans to Evaluate CLI (#8439) * Add Spans to Evaluate CLI * Change to spans_key * Add spans per_type output Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Fix spancat GPU issues (#8455) * Fix GPU issues * Require thinc >=8.0.6 * Switch to glorot_uniform_init * Fix and test ngram suggester * Include final ngram in doc for all sizes * Fix ngrams for docs of the same length as ngram size * Handle batches of docs that result in no ngrams * Add tests Co-authored-by: Ines Montani <ines@ines.io> Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> Co-authored-by: Nirant <NirantK@users.noreply.github.com>
2021-06-24 10:35:27 +00:00
Load the pipe from a bytestring. Modifies the object in place and returns it.
> #### Example
>
> ```python
> spancat_bytes = spancat.to_bytes()
> spancat = nlp.add_pipe("spancat")
> spancat.from_bytes(spancat_bytes)
> ```
| Name | Description |
| -------------- | ------------------------------------------------------------------------------------------- |
| `bytes_data` | The data to load from. ~~bytes~~ |
| _keyword-only_ | |
| `exclude` | String names of [serialization fields](#serialization-fields) to exclude. ~~Iterable[str]~~ |
| **RETURNS** | The `SpanCategorizer` object. ~~SpanCategorizer~~ |
Website migration from Gatsby to Next (#12058) * Rename all MDX file to `.mdx` * Lock current node version (#11885) * Apply Prettier (#11996) * Minor website fixes (#11974) [ci skip] * fix table * Migrate to Next WEB-17 (#12005) * Initial commit * Run `npx create-next-app@13 next-blog` * Install MDX packages Following: https://github.com/vercel/next.js/blob/77b5f79a4dff453abb62346bf75b14d859539b81/packages/next-mdx/readme.md * Add MDX to Next * Allow Next to handle `.md` and `.mdx` files. * Add VSCode extension recommendation * Disabled TypeScript strict mode for now * Add prettier * Apply Prettier to all files * Make sure to use correct Node version * Add basic implementation for `MDXRemote` * Add experimental Rust MDX parser * Add `/public` * Add SASS support * Remove default pages and styling * Convert to module This allows to use `import/export` syntax * Add import for custom components * Add ability to load plugins * Extract function This will make the next commit easier to read * Allow to handle directories for page creation * Refactoring * Allow to parse subfolders for pages * Extract logic * Redirect `index.mdx` to parent directory * Disabled ESLint during builds * Disabled typescript during build * Remove Gatsby from `README.md` * Rephrase Docker part of `README.md` * Update project structure in `README.md` * Move and rename plugins * Update plugin for wrapping sections * Add dependencies for plugin * Use plugin * Rename wrapper type * Simplify unnessary adding of id to sections The slugified section ids are useless, because they can not be referenced anywhere anyway. The navigation only works if the section has the same id as the heading. * Add plugin for custom attributes on Markdown elements * Add plugin to readd support for tables * Add plugin to fix problem with wrapped images For more details see this issue: https://github.com/mdx-js/mdx/issues/1798 * Add necessary meta data to pages * Install necessary dependencies * Remove outdated MDX handling * Remove reliance on `InlineList` * Use existing Remark components * Remove unallowed heading Before `h1` components where not overwritten and would never have worked and they aren't used anywhere either. * Add missing components to MDX * Add correct styling * Fix broken list * Fix broken CSS classes * Implement layout * Fix links * Fix broken images * Fix pattern image * Fix heading attributes * Rename heading attribute `new` was causing some weird issue, so renaming it to `version` * Update comment syntax in MDX * Merge imports * Fix markdown rendering inside components * Add model pages * Simplify anchors * Fix default value for theme * Add Universe index page * Add Universe categories * Add Universe projects * Fix Next problem with copy Next complains when the server renders something different then the client, therfor we move the differing logic to `useEffect` * Fix improper component nesting Next doesn't allow block elements inside a `<p>` * Replace landing page MDX with page component * Remove inlined iframe content * Remove ability to inline HTML content in iFrames * Remove MDX imports * Fix problem with image inside link in MDX * Escape character for MDX * Fix unescaped characters in MDX * Fix headings with logo * Allow to export static HTML pages * Add prebuild script This command is automatically run by Next * Replace `svg-loader` with `react-inlinesvg` `svg-loader` is no longer maintained * Fix ESLint `react-hooks/exhaustive-deps` * Fix dropdowns * Change code language from `cli` to `bash` * Remove unnessary language `none` * Fix invalid code language `markdown_` with an underscore was used to basically turn of syntax highlighting, but using unknown languages know throws an error. * Enable code blocks plugin * Readd `InlineCode` component MDX2 removed the `inlineCode` component > The special component name `inlineCode` was removed, we recommend to use `pre` for the block version of code, and code for both the block and inline versions Source: https://mdxjs.com/migrating/v2/#update-mdx-content * Remove unused code * Extract function to own file * Fix code syntax highlighting * Update syntax for code block meta data * Remove unused prop * Fix internal link recognition There is a problem with regex between Node and browser, and since Next runs the component on both, this create an error. `Prop `rel` did not match. Server: "null" Client: "noopener nofollow noreferrer"` This simplifies the implementation and fixes the above error. * Replace `react-helmet` with `next/head` * Fix `className` problem for JSX component * Fix broken bold markdown * Convert file to `.mjs` to be used by Node process * Add plugin to replace strings * Fix custom table row styling * Fix problem with `span` inside inline `code` React doesn't allow a `span` inside an inline `code` element and throws an error in dev mode. * Add `_document` to be able to customize `<html>` and `<body>` * Add `lang="en"` * Store Netlify settings in file This way we don't need to update via Netlify UI, which can be tricky if changing build settings. * Add sitemap * Add Smartypants * Add PWA support * Add `manifest.webmanifest` * Fix bug with anchor links after reloading There was no need for the previous implementation, since the browser handles this nativly. Additional the manual scrolling into view was actually broken, because the heading would disappear behind the menu bar. * Rename custom event I was googeling for ages to find out what kind of event `inview` is, only to figure out it was a custom event with a name that sounds pretty much like a native one. 🫠 * Fix missing comment syntax highlighting * Refactor Quickstart component The previous implementation was hidding the irrelevant lines via data-props and dynamically generated CSS. This created problems with Next and was also hard to follow. CSS was used to do what React is supposed to handle. The new implementation simplfy filters the list of children (React elements) via their props. * Fix syntax highlighting for Training Quickstart * Unify code rendering * Improve error logging in Juniper * Fix Juniper component * Automatically generate "Read Next" link * Add Plausible * Use recent DocSearch component and adjust styling * Fix images * Turn of image optimization > Image Optimization using Next.js' default loader is not compatible with `next export`. We currently deploy to Netlify via `next export` * Dont build pages starting with `_` * Remove unused files * Add Next plugin to Netlify * Fix button layout MDX automatically adds `p` tags around text on a new line and Prettier wants to put the text on a new line. Hacking with JSX string. * Add 404 page * Apply Prettier * Update Prettier for `package.json` Next sometimes wants to patch `package-lock.json`. The old Prettier setting indended with 4 spaces, but Next always indends with 2 spaces. Since `npm install` automatically uses the indendation from `package.json` for `package-lock.json` and to avoid the format switching back and forth, both files are now set to 2 spaces. * Apply Next patch to `package-lock.json` When starting the dev server Next would warn `warn - Found lockfile missing swc dependencies, patching...` and update the `package-lock.json`. These are the patched changes. * fix link Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * small backslash fixes * adjust to new style Co-authored-by: Marcus Blättermann <marcus@essenmitsosse.de>
2023-01-11 16:30:07 +00:00
## SpanCategorizer.labels {id="labels",tag="property"}
Add SpanCategorizer component (#6747) * Draft spancat model * Add spancat model * Add test for extract_spans * Add extract_spans layer * Upd extract_spans * Add spancat model * Add test for spancat model * Upd spancat model * Update spancat component * Upd spancat * Update spancat model * Add quick spancat test * Import SpanCategorizer * Fix SpanCategorizer component * Import SpanGroup * Fix span extraction * Fix import * Fix import * Upd model * Update spancat models * Add scoring, update defaults * Update and add docs * Fix type * Update spacy/ml/extract_spans.py * Auto-format and fix import * Fix comment * Fix type * Fix type * Update website/docs/api/spancategorizer.md * Fix comment Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Better defense Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Fix labels list Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/ml/extract_spans.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/pipeline/spancat.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Set annotations during update * Set annotations in spancat * fix imports in test * Update spacy/pipeline/spancat.py * replace MaxoutLogistic with LinearLogistic * fix config * various small fixes * remove set_annotations parameter in update * use our beloved tupley format with recent support for doc.spans * bugfix to allow renaming the default span_key (scores weren't showing up) * use different key in docs example * change defaults to better-working parameters from project (WIP) * register spacy.extract_spans.v1 for legacy purposes * Upd dev version so can build wheel * layers instead of architectures for smaller building blocks * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Include additional scores from overrides in combined score weights * Parameterize spans key in scoring Parameterize the `SpanCategorizer` `spans_key` for scoring purposes so that it's possible to evaluate multiple `spancat` components in the same pipeline. * Use the (intentionally very short) default spans key `sc` in the `SpanCategorizer` * Adjust the default score weights to include the default key * Adjust the scorer to use `spans_{spans_key}` as the prefix for the returned score * Revert addition of `attr_name` argument to `score_spans` and adjust the key in the `getter` instead. Note that for `spancat` components with a custom `span_key`, the score weights currently need to be modified manually in `[training.score_weights]` for them to be available during training. To suppress the default score weights `spans_sc_p/r/f` during training, set them to `null` in `[training.score_weights]`. * Update website/docs/api/scorer.md * Fix scorer for spans key containing underscore * Increment version * Add Spans to Evaluate CLI (#8439) * Add Spans to Evaluate CLI * Change to spans_key * Add spans per_type output Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Fix spancat GPU issues (#8455) * Fix GPU issues * Require thinc >=8.0.6 * Switch to glorot_uniform_init * Fix and test ngram suggester * Include final ngram in doc for all sizes * Fix ngrams for docs of the same length as ngram size * Handle batches of docs that result in no ngrams * Add tests Co-authored-by: Ines Montani <ines@ines.io> Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> Co-authored-by: Nirant <NirantK@users.noreply.github.com>
2021-06-24 10:35:27 +00:00
The labels currently added to the component.
> #### Example
>
> ```python
> spancat.add_label("MY_LABEL")
> assert "MY_LABEL" in spancat.labels
> ```
| Name | Description |
| ----------- | ------------------------------------------------------ |
| **RETURNS** | The labels added to the component. ~~Tuple[str, ...]~~ |
Website migration from Gatsby to Next (#12058) * Rename all MDX file to `.mdx` * Lock current node version (#11885) * Apply Prettier (#11996) * Minor website fixes (#11974) [ci skip] * fix table * Migrate to Next WEB-17 (#12005) * Initial commit * Run `npx create-next-app@13 next-blog` * Install MDX packages Following: https://github.com/vercel/next.js/blob/77b5f79a4dff453abb62346bf75b14d859539b81/packages/next-mdx/readme.md * Add MDX to Next * Allow Next to handle `.md` and `.mdx` files. * Add VSCode extension recommendation * Disabled TypeScript strict mode for now * Add prettier * Apply Prettier to all files * Make sure to use correct Node version * Add basic implementation for `MDXRemote` * Add experimental Rust MDX parser * Add `/public` * Add SASS support * Remove default pages and styling * Convert to module This allows to use `import/export` syntax * Add import for custom components * Add ability to load plugins * Extract function This will make the next commit easier to read * Allow to handle directories for page creation * Refactoring * Allow to parse subfolders for pages * Extract logic * Redirect `index.mdx` to parent directory * Disabled ESLint during builds * Disabled typescript during build * Remove Gatsby from `README.md` * Rephrase Docker part of `README.md` * Update project structure in `README.md` * Move and rename plugins * Update plugin for wrapping sections * Add dependencies for plugin * Use plugin * Rename wrapper type * Simplify unnessary adding of id to sections The slugified section ids are useless, because they can not be referenced anywhere anyway. The navigation only works if the section has the same id as the heading. * Add plugin for custom attributes on Markdown elements * Add plugin to readd support for tables * Add plugin to fix problem with wrapped images For more details see this issue: https://github.com/mdx-js/mdx/issues/1798 * Add necessary meta data to pages * Install necessary dependencies * Remove outdated MDX handling * Remove reliance on `InlineList` * Use existing Remark components * Remove unallowed heading Before `h1` components where not overwritten and would never have worked and they aren't used anywhere either. * Add missing components to MDX * Add correct styling * Fix broken list * Fix broken CSS classes * Implement layout * Fix links * Fix broken images * Fix pattern image * Fix heading attributes * Rename heading attribute `new` was causing some weird issue, so renaming it to `version` * Update comment syntax in MDX * Merge imports * Fix markdown rendering inside components * Add model pages * Simplify anchors * Fix default value for theme * Add Universe index page * Add Universe categories * Add Universe projects * Fix Next problem with copy Next complains when the server renders something different then the client, therfor we move the differing logic to `useEffect` * Fix improper component nesting Next doesn't allow block elements inside a `<p>` * Replace landing page MDX with page component * Remove inlined iframe content * Remove ability to inline HTML content in iFrames * Remove MDX imports * Fix problem with image inside link in MDX * Escape character for MDX * Fix unescaped characters in MDX * Fix headings with logo * Allow to export static HTML pages * Add prebuild script This command is automatically run by Next * Replace `svg-loader` with `react-inlinesvg` `svg-loader` is no longer maintained * Fix ESLint `react-hooks/exhaustive-deps` * Fix dropdowns * Change code language from `cli` to `bash` * Remove unnessary language `none` * Fix invalid code language `markdown_` with an underscore was used to basically turn of syntax highlighting, but using unknown languages know throws an error. * Enable code blocks plugin * Readd `InlineCode` component MDX2 removed the `inlineCode` component > The special component name `inlineCode` was removed, we recommend to use `pre` for the block version of code, and code for both the block and inline versions Source: https://mdxjs.com/migrating/v2/#update-mdx-content * Remove unused code * Extract function to own file * Fix code syntax highlighting * Update syntax for code block meta data * Remove unused prop * Fix internal link recognition There is a problem with regex between Node and browser, and since Next runs the component on both, this create an error. `Prop `rel` did not match. Server: "null" Client: "noopener nofollow noreferrer"` This simplifies the implementation and fixes the above error. * Replace `react-helmet` with `next/head` * Fix `className` problem for JSX component * Fix broken bold markdown * Convert file to `.mjs` to be used by Node process * Add plugin to replace strings * Fix custom table row styling * Fix problem with `span` inside inline `code` React doesn't allow a `span` inside an inline `code` element and throws an error in dev mode. * Add `_document` to be able to customize `<html>` and `<body>` * Add `lang="en"` * Store Netlify settings in file This way we don't need to update via Netlify UI, which can be tricky if changing build settings. * Add sitemap * Add Smartypants * Add PWA support * Add `manifest.webmanifest` * Fix bug with anchor links after reloading There was no need for the previous implementation, since the browser handles this nativly. Additional the manual scrolling into view was actually broken, because the heading would disappear behind the menu bar. * Rename custom event I was googeling for ages to find out what kind of event `inview` is, only to figure out it was a custom event with a name that sounds pretty much like a native one. 🫠 * Fix missing comment syntax highlighting * Refactor Quickstart component The previous implementation was hidding the irrelevant lines via data-props and dynamically generated CSS. This created problems with Next and was also hard to follow. CSS was used to do what React is supposed to handle. The new implementation simplfy filters the list of children (React elements) via their props. * Fix syntax highlighting for Training Quickstart * Unify code rendering * Improve error logging in Juniper * Fix Juniper component * Automatically generate "Read Next" link * Add Plausible * Use recent DocSearch component and adjust styling * Fix images * Turn of image optimization > Image Optimization using Next.js' default loader is not compatible with `next export`. We currently deploy to Netlify via `next export` * Dont build pages starting with `_` * Remove unused files * Add Next plugin to Netlify * Fix button layout MDX automatically adds `p` tags around text on a new line and Prettier wants to put the text on a new line. Hacking with JSX string. * Add 404 page * Apply Prettier * Update Prettier for `package.json` Next sometimes wants to patch `package-lock.json`. The old Prettier setting indended with 4 spaces, but Next always indends with 2 spaces. Since `npm install` automatically uses the indendation from `package.json` for `package-lock.json` and to avoid the format switching back and forth, both files are now set to 2 spaces. * Apply Next patch to `package-lock.json` When starting the dev server Next would warn `warn - Found lockfile missing swc dependencies, patching...` and update the `package-lock.json`. These are the patched changes. * fix link Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * small backslash fixes * adjust to new style Co-authored-by: Marcus Blättermann <marcus@essenmitsosse.de>
2023-01-11 16:30:07 +00:00
## SpanCategorizer.label_data {id="label_data",tag="property"}
Add SpanCategorizer component (#6747) * Draft spancat model * Add spancat model * Add test for extract_spans * Add extract_spans layer * Upd extract_spans * Add spancat model * Add test for spancat model * Upd spancat model * Update spancat component * Upd spancat * Update spancat model * Add quick spancat test * Import SpanCategorizer * Fix SpanCategorizer component * Import SpanGroup * Fix span extraction * Fix import * Fix import * Upd model * Update spancat models * Add scoring, update defaults * Update and add docs * Fix type * Update spacy/ml/extract_spans.py * Auto-format and fix import * Fix comment * Fix type * Fix type * Update website/docs/api/spancategorizer.md * Fix comment Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Better defense Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Fix labels list Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/ml/extract_spans.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/pipeline/spancat.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Set annotations during update * Set annotations in spancat * fix imports in test * Update spacy/pipeline/spancat.py * replace MaxoutLogistic with LinearLogistic * fix config * various small fixes * remove set_annotations parameter in update * use our beloved tupley format with recent support for doc.spans * bugfix to allow renaming the default span_key (scores weren't showing up) * use different key in docs example * change defaults to better-working parameters from project (WIP) * register spacy.extract_spans.v1 for legacy purposes * Upd dev version so can build wheel * layers instead of architectures for smaller building blocks * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Include additional scores from overrides in combined score weights * Parameterize spans key in scoring Parameterize the `SpanCategorizer` `spans_key` for scoring purposes so that it's possible to evaluate multiple `spancat` components in the same pipeline. * Use the (intentionally very short) default spans key `sc` in the `SpanCategorizer` * Adjust the default score weights to include the default key * Adjust the scorer to use `spans_{spans_key}` as the prefix for the returned score * Revert addition of `attr_name` argument to `score_spans` and adjust the key in the `getter` instead. Note that for `spancat` components with a custom `span_key`, the score weights currently need to be modified manually in `[training.score_weights]` for them to be available during training. To suppress the default score weights `spans_sc_p/r/f` during training, set them to `null` in `[training.score_weights]`. * Update website/docs/api/scorer.md * Fix scorer for spans key containing underscore * Increment version * Add Spans to Evaluate CLI (#8439) * Add Spans to Evaluate CLI * Change to spans_key * Add spans per_type output Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Fix spancat GPU issues (#8455) * Fix GPU issues * Require thinc >=8.0.6 * Switch to glorot_uniform_init * Fix and test ngram suggester * Include final ngram in doc for all sizes * Fix ngrams for docs of the same length as ngram size * Handle batches of docs that result in no ngrams * Add tests Co-authored-by: Ines Montani <ines@ines.io> Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> Co-authored-by: Nirant <NirantK@users.noreply.github.com>
2021-06-24 10:35:27 +00:00
The labels currently added to the component and their internal meta information.
This is the data generated by [`init labels`](/api/cli#init-labels) and used by
[`SpanCategorizer.initialize`](/api/spancategorizer#initialize) to initialize
the model with a pre-defined label set.
> #### Example
>
> ```python
> labels = spancat.label_data
> spancat.initialize(lambda: [], nlp=nlp, labels=labels)
> ```
| Name | Description |
| ----------- | ---------------------------------------------------------- |
| **RETURNS** | The label data added to the component. ~~Tuple[str, ...]~~ |
Website migration from Gatsby to Next (#12058) * Rename all MDX file to `.mdx` * Lock current node version (#11885) * Apply Prettier (#11996) * Minor website fixes (#11974) [ci skip] * fix table * Migrate to Next WEB-17 (#12005) * Initial commit * Run `npx create-next-app@13 next-blog` * Install MDX packages Following: https://github.com/vercel/next.js/blob/77b5f79a4dff453abb62346bf75b14d859539b81/packages/next-mdx/readme.md * Add MDX to Next * Allow Next to handle `.md` and `.mdx` files. * Add VSCode extension recommendation * Disabled TypeScript strict mode for now * Add prettier * Apply Prettier to all files * Make sure to use correct Node version * Add basic implementation for `MDXRemote` * Add experimental Rust MDX parser * Add `/public` * Add SASS support * Remove default pages and styling * Convert to module This allows to use `import/export` syntax * Add import for custom components * Add ability to load plugins * Extract function This will make the next commit easier to read * Allow to handle directories for page creation * Refactoring * Allow to parse subfolders for pages * Extract logic * Redirect `index.mdx` to parent directory * Disabled ESLint during builds * Disabled typescript during build * Remove Gatsby from `README.md` * Rephrase Docker part of `README.md` * Update project structure in `README.md` * Move and rename plugins * Update plugin for wrapping sections * Add dependencies for plugin * Use plugin * Rename wrapper type * Simplify unnessary adding of id to sections The slugified section ids are useless, because they can not be referenced anywhere anyway. The navigation only works if the section has the same id as the heading. * Add plugin for custom attributes on Markdown elements * Add plugin to readd support for tables * Add plugin to fix problem with wrapped images For more details see this issue: https://github.com/mdx-js/mdx/issues/1798 * Add necessary meta data to pages * Install necessary dependencies * Remove outdated MDX handling * Remove reliance on `InlineList` * Use existing Remark components * Remove unallowed heading Before `h1` components where not overwritten and would never have worked and they aren't used anywhere either. * Add missing components to MDX * Add correct styling * Fix broken list * Fix broken CSS classes * Implement layout * Fix links * Fix broken images * Fix pattern image * Fix heading attributes * Rename heading attribute `new` was causing some weird issue, so renaming it to `version` * Update comment syntax in MDX * Merge imports * Fix markdown rendering inside components * Add model pages * Simplify anchors * Fix default value for theme * Add Universe index page * Add Universe categories * Add Universe projects * Fix Next problem with copy Next complains when the server renders something different then the client, therfor we move the differing logic to `useEffect` * Fix improper component nesting Next doesn't allow block elements inside a `<p>` * Replace landing page MDX with page component * Remove inlined iframe content * Remove ability to inline HTML content in iFrames * Remove MDX imports * Fix problem with image inside link in MDX * Escape character for MDX * Fix unescaped characters in MDX * Fix headings with logo * Allow to export static HTML pages * Add prebuild script This command is automatically run by Next * Replace `svg-loader` with `react-inlinesvg` `svg-loader` is no longer maintained * Fix ESLint `react-hooks/exhaustive-deps` * Fix dropdowns * Change code language from `cli` to `bash` * Remove unnessary language `none` * Fix invalid code language `markdown_` with an underscore was used to basically turn of syntax highlighting, but using unknown languages know throws an error. * Enable code blocks plugin * Readd `InlineCode` component MDX2 removed the `inlineCode` component > The special component name `inlineCode` was removed, we recommend to use `pre` for the block version of code, and code for both the block and inline versions Source: https://mdxjs.com/migrating/v2/#update-mdx-content * Remove unused code * Extract function to own file * Fix code syntax highlighting * Update syntax for code block meta data * Remove unused prop * Fix internal link recognition There is a problem with regex between Node and browser, and since Next runs the component on both, this create an error. `Prop `rel` did not match. Server: "null" Client: "noopener nofollow noreferrer"` This simplifies the implementation and fixes the above error. * Replace `react-helmet` with `next/head` * Fix `className` problem for JSX component * Fix broken bold markdown * Convert file to `.mjs` to be used by Node process * Add plugin to replace strings * Fix custom table row styling * Fix problem with `span` inside inline `code` React doesn't allow a `span` inside an inline `code` element and throws an error in dev mode. * Add `_document` to be able to customize `<html>` and `<body>` * Add `lang="en"` * Store Netlify settings in file This way we don't need to update via Netlify UI, which can be tricky if changing build settings. * Add sitemap * Add Smartypants * Add PWA support * Add `manifest.webmanifest` * Fix bug with anchor links after reloading There was no need for the previous implementation, since the browser handles this nativly. Additional the manual scrolling into view was actually broken, because the heading would disappear behind the menu bar. * Rename custom event I was googeling for ages to find out what kind of event `inview` is, only to figure out it was a custom event with a name that sounds pretty much like a native one. 🫠 * Fix missing comment syntax highlighting * Refactor Quickstart component The previous implementation was hidding the irrelevant lines via data-props and dynamically generated CSS. This created problems with Next and was also hard to follow. CSS was used to do what React is supposed to handle. The new implementation simplfy filters the list of children (React elements) via their props. * Fix syntax highlighting for Training Quickstart * Unify code rendering * Improve error logging in Juniper * Fix Juniper component * Automatically generate "Read Next" link * Add Plausible * Use recent DocSearch component and adjust styling * Fix images * Turn of image optimization > Image Optimization using Next.js' default loader is not compatible with `next export`. We currently deploy to Netlify via `next export` * Dont build pages starting with `_` * Remove unused files * Add Next plugin to Netlify * Fix button layout MDX automatically adds `p` tags around text on a new line and Prettier wants to put the text on a new line. Hacking with JSX string. * Add 404 page * Apply Prettier * Update Prettier for `package.json` Next sometimes wants to patch `package-lock.json`. The old Prettier setting indended with 4 spaces, but Next always indends with 2 spaces. Since `npm install` automatically uses the indendation from `package.json` for `package-lock.json` and to avoid the format switching back and forth, both files are now set to 2 spaces. * Apply Next patch to `package-lock.json` When starting the dev server Next would warn `warn - Found lockfile missing swc dependencies, patching...` and update the `package-lock.json`. These are the patched changes. * fix link Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * small backslash fixes * adjust to new style Co-authored-by: Marcus Blättermann <marcus@essenmitsosse.de>
2023-01-11 16:30:07 +00:00
## Serialization fields {id="serialization-fields"}
Add SpanCategorizer component (#6747) * Draft spancat model * Add spancat model * Add test for extract_spans * Add extract_spans layer * Upd extract_spans * Add spancat model * Add test for spancat model * Upd spancat model * Update spancat component * Upd spancat * Update spancat model * Add quick spancat test * Import SpanCategorizer * Fix SpanCategorizer component * Import SpanGroup * Fix span extraction * Fix import * Fix import * Upd model * Update spancat models * Add scoring, update defaults * Update and add docs * Fix type * Update spacy/ml/extract_spans.py * Auto-format and fix import * Fix comment * Fix type * Fix type * Update website/docs/api/spancategorizer.md * Fix comment Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Better defense Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Fix labels list Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/ml/extract_spans.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/pipeline/spancat.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Set annotations during update * Set annotations in spancat * fix imports in test * Update spacy/pipeline/spancat.py * replace MaxoutLogistic with LinearLogistic * fix config * various small fixes * remove set_annotations parameter in update * use our beloved tupley format with recent support for doc.spans * bugfix to allow renaming the default span_key (scores weren't showing up) * use different key in docs example * change defaults to better-working parameters from project (WIP) * register spacy.extract_spans.v1 for legacy purposes * Upd dev version so can build wheel * layers instead of architectures for smaller building blocks * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Include additional scores from overrides in combined score weights * Parameterize spans key in scoring Parameterize the `SpanCategorizer` `spans_key` for scoring purposes so that it's possible to evaluate multiple `spancat` components in the same pipeline. * Use the (intentionally very short) default spans key `sc` in the `SpanCategorizer` * Adjust the default score weights to include the default key * Adjust the scorer to use `spans_{spans_key}` as the prefix for the returned score * Revert addition of `attr_name` argument to `score_spans` and adjust the key in the `getter` instead. Note that for `spancat` components with a custom `span_key`, the score weights currently need to be modified manually in `[training.score_weights]` for them to be available during training. To suppress the default score weights `spans_sc_p/r/f` during training, set them to `null` in `[training.score_weights]`. * Update website/docs/api/scorer.md * Fix scorer for spans key containing underscore * Increment version * Add Spans to Evaluate CLI (#8439) * Add Spans to Evaluate CLI * Change to spans_key * Add spans per_type output Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Fix spancat GPU issues (#8455) * Fix GPU issues * Require thinc >=8.0.6 * Switch to glorot_uniform_init * Fix and test ngram suggester * Include final ngram in doc for all sizes * Fix ngrams for docs of the same length as ngram size * Handle batches of docs that result in no ngrams * Add tests Co-authored-by: Ines Montani <ines@ines.io> Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> Co-authored-by: Nirant <NirantK@users.noreply.github.com>
2021-06-24 10:35:27 +00:00
During serialization, spaCy will export several data fields used to restore
different aspects of the object. If needed, you can exclude them from
serialization by passing in the string names via the `exclude` argument.
> #### Example
>
> ```python
> data = spancat.to_disk("/path", exclude=["vocab"])
> ```
| Name | Description |
| ------- | -------------------------------------------------------------- |
| `vocab` | The shared [`Vocab`](/api/vocab). |
| `cfg` | The config file. You usually don't want to exclude this. |
| `model` | The binary model data. You usually don't want to exclude this. |
Website migration from Gatsby to Next (#12058) * Rename all MDX file to `.mdx` * Lock current node version (#11885) * Apply Prettier (#11996) * Minor website fixes (#11974) [ci skip] * fix table * Migrate to Next WEB-17 (#12005) * Initial commit * Run `npx create-next-app@13 next-blog` * Install MDX packages Following: https://github.com/vercel/next.js/blob/77b5f79a4dff453abb62346bf75b14d859539b81/packages/next-mdx/readme.md * Add MDX to Next * Allow Next to handle `.md` and `.mdx` files. * Add VSCode extension recommendation * Disabled TypeScript strict mode for now * Add prettier * Apply Prettier to all files * Make sure to use correct Node version * Add basic implementation for `MDXRemote` * Add experimental Rust MDX parser * Add `/public` * Add SASS support * Remove default pages and styling * Convert to module This allows to use `import/export` syntax * Add import for custom components * Add ability to load plugins * Extract function This will make the next commit easier to read * Allow to handle directories for page creation * Refactoring * Allow to parse subfolders for pages * Extract logic * Redirect `index.mdx` to parent directory * Disabled ESLint during builds * Disabled typescript during build * Remove Gatsby from `README.md` * Rephrase Docker part of `README.md` * Update project structure in `README.md` * Move and rename plugins * Update plugin for wrapping sections * Add dependencies for plugin * Use plugin * Rename wrapper type * Simplify unnessary adding of id to sections The slugified section ids are useless, because they can not be referenced anywhere anyway. The navigation only works if the section has the same id as the heading. * Add plugin for custom attributes on Markdown elements * Add plugin to readd support for tables * Add plugin to fix problem with wrapped images For more details see this issue: https://github.com/mdx-js/mdx/issues/1798 * Add necessary meta data to pages * Install necessary dependencies * Remove outdated MDX handling * Remove reliance on `InlineList` * Use existing Remark components * Remove unallowed heading Before `h1` components where not overwritten and would never have worked and they aren't used anywhere either. * Add missing components to MDX * Add correct styling * Fix broken list * Fix broken CSS classes * Implement layout * Fix links * Fix broken images * Fix pattern image * Fix heading attributes * Rename heading attribute `new` was causing some weird issue, so renaming it to `version` * Update comment syntax in MDX * Merge imports * Fix markdown rendering inside components * Add model pages * Simplify anchors * Fix default value for theme * Add Universe index page * Add Universe categories * Add Universe projects * Fix Next problem with copy Next complains when the server renders something different then the client, therfor we move the differing logic to `useEffect` * Fix improper component nesting Next doesn't allow block elements inside a `<p>` * Replace landing page MDX with page component * Remove inlined iframe content * Remove ability to inline HTML content in iFrames * Remove MDX imports * Fix problem with image inside link in MDX * Escape character for MDX * Fix unescaped characters in MDX * Fix headings with logo * Allow to export static HTML pages * Add prebuild script This command is automatically run by Next * Replace `svg-loader` with `react-inlinesvg` `svg-loader` is no longer maintained * Fix ESLint `react-hooks/exhaustive-deps` * Fix dropdowns * Change code language from `cli` to `bash` * Remove unnessary language `none` * Fix invalid code language `markdown_` with an underscore was used to basically turn of syntax highlighting, but using unknown languages know throws an error. * Enable code blocks plugin * Readd `InlineCode` component MDX2 removed the `inlineCode` component > The special component name `inlineCode` was removed, we recommend to use `pre` for the block version of code, and code for both the block and inline versions Source: https://mdxjs.com/migrating/v2/#update-mdx-content * Remove unused code * Extract function to own file * Fix code syntax highlighting * Update syntax for code block meta data * Remove unused prop * Fix internal link recognition There is a problem with regex between Node and browser, and since Next runs the component on both, this create an error. `Prop `rel` did not match. Server: "null" Client: "noopener nofollow noreferrer"` This simplifies the implementation and fixes the above error. * Replace `react-helmet` with `next/head` * Fix `className` problem for JSX component * Fix broken bold markdown * Convert file to `.mjs` to be used by Node process * Add plugin to replace strings * Fix custom table row styling * Fix problem with `span` inside inline `code` React doesn't allow a `span` inside an inline `code` element and throws an error in dev mode. * Add `_document` to be able to customize `<html>` and `<body>` * Add `lang="en"` * Store Netlify settings in file This way we don't need to update via Netlify UI, which can be tricky if changing build settings. * Add sitemap * Add Smartypants * Add PWA support * Add `manifest.webmanifest` * Fix bug with anchor links after reloading There was no need for the previous implementation, since the browser handles this nativly. Additional the manual scrolling into view was actually broken, because the heading would disappear behind the menu bar. * Rename custom event I was googeling for ages to find out what kind of event `inview` is, only to figure out it was a custom event with a name that sounds pretty much like a native one. 🫠 * Fix missing comment syntax highlighting * Refactor Quickstart component The previous implementation was hidding the irrelevant lines via data-props and dynamically generated CSS. This created problems with Next and was also hard to follow. CSS was used to do what React is supposed to handle. The new implementation simplfy filters the list of children (React elements) via their props. * Fix syntax highlighting for Training Quickstart * Unify code rendering * Improve error logging in Juniper * Fix Juniper component * Automatically generate "Read Next" link * Add Plausible * Use recent DocSearch component and adjust styling * Fix images * Turn of image optimization > Image Optimization using Next.js' default loader is not compatible with `next export`. We currently deploy to Netlify via `next export` * Dont build pages starting with `_` * Remove unused files * Add Next plugin to Netlify * Fix button layout MDX automatically adds `p` tags around text on a new line and Prettier wants to put the text on a new line. Hacking with JSX string. * Add 404 page * Apply Prettier * Update Prettier for `package.json` Next sometimes wants to patch `package-lock.json`. The old Prettier setting indended with 4 spaces, but Next always indends with 2 spaces. Since `npm install` automatically uses the indendation from `package.json` for `package-lock.json` and to avoid the format switching back and forth, both files are now set to 2 spaces. * Apply Next patch to `package-lock.json` When starting the dev server Next would warn `warn - Found lockfile missing swc dependencies, patching...` and update the `package-lock.json`. These are the patched changes. * fix link Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * small backslash fixes * adjust to new style Co-authored-by: Marcus Blättermann <marcus@essenmitsosse.de>
2023-01-11 16:30:07 +00:00
## Suggesters {id="suggesters",tag="registered functions",source="spacy/pipeline/spancat.py"}
Add SpanCategorizer component (#6747) * Draft spancat model * Add spancat model * Add test for extract_spans * Add extract_spans layer * Upd extract_spans * Add spancat model * Add test for spancat model * Upd spancat model * Update spancat component * Upd spancat * Update spancat model * Add quick spancat test * Import SpanCategorizer * Fix SpanCategorizer component * Import SpanGroup * Fix span extraction * Fix import * Fix import * Upd model * Update spancat models * Add scoring, update defaults * Update and add docs * Fix type * Update spacy/ml/extract_spans.py * Auto-format and fix import * Fix comment * Fix type * Fix type * Update website/docs/api/spancategorizer.md * Fix comment Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Better defense Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Fix labels list Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/ml/extract_spans.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/pipeline/spancat.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Set annotations during update * Set annotations in spancat * fix imports in test * Update spacy/pipeline/spancat.py * replace MaxoutLogistic with LinearLogistic * fix config * various small fixes * remove set_annotations parameter in update * use our beloved tupley format with recent support for doc.spans * bugfix to allow renaming the default span_key (scores weren't showing up) * use different key in docs example * change defaults to better-working parameters from project (WIP) * register spacy.extract_spans.v1 for legacy purposes * Upd dev version so can build wheel * layers instead of architectures for smaller building blocks * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Include additional scores from overrides in combined score weights * Parameterize spans key in scoring Parameterize the `SpanCategorizer` `spans_key` for scoring purposes so that it's possible to evaluate multiple `spancat` components in the same pipeline. * Use the (intentionally very short) default spans key `sc` in the `SpanCategorizer` * Adjust the default score weights to include the default key * Adjust the scorer to use `spans_{spans_key}` as the prefix for the returned score * Revert addition of `attr_name` argument to `score_spans` and adjust the key in the `getter` instead. Note that for `spancat` components with a custom `span_key`, the score weights currently need to be modified manually in `[training.score_weights]` for them to be available during training. To suppress the default score weights `spans_sc_p/r/f` during training, set them to `null` in `[training.score_weights]`. * Update website/docs/api/scorer.md * Fix scorer for spans key containing underscore * Increment version * Add Spans to Evaluate CLI (#8439) * Add Spans to Evaluate CLI * Change to spans_key * Add spans per_type output Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Fix spancat GPU issues (#8455) * Fix GPU issues * Require thinc >=8.0.6 * Switch to glorot_uniform_init * Fix and test ngram suggester * Include final ngram in doc for all sizes * Fix ngrams for docs of the same length as ngram size * Handle batches of docs that result in no ngrams * Add tests Co-authored-by: Ines Montani <ines@ines.io> Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> Co-authored-by: Nirant <NirantK@users.noreply.github.com>
2021-06-24 10:35:27 +00:00
Website migration from Gatsby to Next (#12058) * Rename all MDX file to `.mdx` * Lock current node version (#11885) * Apply Prettier (#11996) * Minor website fixes (#11974) [ci skip] * fix table * Migrate to Next WEB-17 (#12005) * Initial commit * Run `npx create-next-app@13 next-blog` * Install MDX packages Following: https://github.com/vercel/next.js/blob/77b5f79a4dff453abb62346bf75b14d859539b81/packages/next-mdx/readme.md * Add MDX to Next * Allow Next to handle `.md` and `.mdx` files. * Add VSCode extension recommendation * Disabled TypeScript strict mode for now * Add prettier * Apply Prettier to all files * Make sure to use correct Node version * Add basic implementation for `MDXRemote` * Add experimental Rust MDX parser * Add `/public` * Add SASS support * Remove default pages and styling * Convert to module This allows to use `import/export` syntax * Add import for custom components * Add ability to load plugins * Extract function This will make the next commit easier to read * Allow to handle directories for page creation * Refactoring * Allow to parse subfolders for pages * Extract logic * Redirect `index.mdx` to parent directory * Disabled ESLint during builds * Disabled typescript during build * Remove Gatsby from `README.md` * Rephrase Docker part of `README.md` * Update project structure in `README.md` * Move and rename plugins * Update plugin for wrapping sections * Add dependencies for plugin * Use plugin * Rename wrapper type * Simplify unnessary adding of id to sections The slugified section ids are useless, because they can not be referenced anywhere anyway. The navigation only works if the section has the same id as the heading. * Add plugin for custom attributes on Markdown elements * Add plugin to readd support for tables * Add plugin to fix problem with wrapped images For more details see this issue: https://github.com/mdx-js/mdx/issues/1798 * Add necessary meta data to pages * Install necessary dependencies * Remove outdated MDX handling * Remove reliance on `InlineList` * Use existing Remark components * Remove unallowed heading Before `h1` components where not overwritten and would never have worked and they aren't used anywhere either. * Add missing components to MDX * Add correct styling * Fix broken list * Fix broken CSS classes * Implement layout * Fix links * Fix broken images * Fix pattern image * Fix heading attributes * Rename heading attribute `new` was causing some weird issue, so renaming it to `version` * Update comment syntax in MDX * Merge imports * Fix markdown rendering inside components * Add model pages * Simplify anchors * Fix default value for theme * Add Universe index page * Add Universe categories * Add Universe projects * Fix Next problem with copy Next complains when the server renders something different then the client, therfor we move the differing logic to `useEffect` * Fix improper component nesting Next doesn't allow block elements inside a `<p>` * Replace landing page MDX with page component * Remove inlined iframe content * Remove ability to inline HTML content in iFrames * Remove MDX imports * Fix problem with image inside link in MDX * Escape character for MDX * Fix unescaped characters in MDX * Fix headings with logo * Allow to export static HTML pages * Add prebuild script This command is automatically run by Next * Replace `svg-loader` with `react-inlinesvg` `svg-loader` is no longer maintained * Fix ESLint `react-hooks/exhaustive-deps` * Fix dropdowns * Change code language from `cli` to `bash` * Remove unnessary language `none` * Fix invalid code language `markdown_` with an underscore was used to basically turn of syntax highlighting, but using unknown languages know throws an error. * Enable code blocks plugin * Readd `InlineCode` component MDX2 removed the `inlineCode` component > The special component name `inlineCode` was removed, we recommend to use `pre` for the block version of code, and code for both the block and inline versions Source: https://mdxjs.com/migrating/v2/#update-mdx-content * Remove unused code * Extract function to own file * Fix code syntax highlighting * Update syntax for code block meta data * Remove unused prop * Fix internal link recognition There is a problem with regex between Node and browser, and since Next runs the component on both, this create an error. `Prop `rel` did not match. Server: "null" Client: "noopener nofollow noreferrer"` This simplifies the implementation and fixes the above error. * Replace `react-helmet` with `next/head` * Fix `className` problem for JSX component * Fix broken bold markdown * Convert file to `.mjs` to be used by Node process * Add plugin to replace strings * Fix custom table row styling * Fix problem with `span` inside inline `code` React doesn't allow a `span` inside an inline `code` element and throws an error in dev mode. * Add `_document` to be able to customize `<html>` and `<body>` * Add `lang="en"` * Store Netlify settings in file This way we don't need to update via Netlify UI, which can be tricky if changing build settings. * Add sitemap * Add Smartypants * Add PWA support * Add `manifest.webmanifest` * Fix bug with anchor links after reloading There was no need for the previous implementation, since the browser handles this nativly. Additional the manual scrolling into view was actually broken, because the heading would disappear behind the menu bar. * Rename custom event I was googeling for ages to find out what kind of event `inview` is, only to figure out it was a custom event with a name that sounds pretty much like a native one. 🫠 * Fix missing comment syntax highlighting * Refactor Quickstart component The previous implementation was hidding the irrelevant lines via data-props and dynamically generated CSS. This created problems with Next and was also hard to follow. CSS was used to do what React is supposed to handle. The new implementation simplfy filters the list of children (React elements) via their props. * Fix syntax highlighting for Training Quickstart * Unify code rendering * Improve error logging in Juniper * Fix Juniper component * Automatically generate "Read Next" link * Add Plausible * Use recent DocSearch component and adjust styling * Fix images * Turn of image optimization > Image Optimization using Next.js' default loader is not compatible with `next export`. We currently deploy to Netlify via `next export` * Dont build pages starting with `_` * Remove unused files * Add Next plugin to Netlify * Fix button layout MDX automatically adds `p` tags around text on a new line and Prettier wants to put the text on a new line. Hacking with JSX string. * Add 404 page * Apply Prettier * Update Prettier for `package.json` Next sometimes wants to patch `package-lock.json`. The old Prettier setting indended with 4 spaces, but Next always indends with 2 spaces. Since `npm install` automatically uses the indendation from `package.json` for `package-lock.json` and to avoid the format switching back and forth, both files are now set to 2 spaces. * Apply Next patch to `package-lock.json` When starting the dev server Next would warn `warn - Found lockfile missing swc dependencies, patching...` and update the `package-lock.json`. These are the patched changes. * fix link Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * small backslash fixes * adjust to new style Co-authored-by: Marcus Blättermann <marcus@essenmitsosse.de>
2023-01-11 16:30:07 +00:00
### spacy.ngram_suggester.v1 {id="ngram_suggester"}
Add SpanCategorizer component (#6747) * Draft spancat model * Add spancat model * Add test for extract_spans * Add extract_spans layer * Upd extract_spans * Add spancat model * Add test for spancat model * Upd spancat model * Update spancat component * Upd spancat * Update spancat model * Add quick spancat test * Import SpanCategorizer * Fix SpanCategorizer component * Import SpanGroup * Fix span extraction * Fix import * Fix import * Upd model * Update spancat models * Add scoring, update defaults * Update and add docs * Fix type * Update spacy/ml/extract_spans.py * Auto-format and fix import * Fix comment * Fix type * Fix type * Update website/docs/api/spancategorizer.md * Fix comment Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Better defense Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Fix labels list Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/ml/extract_spans.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/pipeline/spancat.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Set annotations during update * Set annotations in spancat * fix imports in test * Update spacy/pipeline/spancat.py * replace MaxoutLogistic with LinearLogistic * fix config * various small fixes * remove set_annotations parameter in update * use our beloved tupley format with recent support for doc.spans * bugfix to allow renaming the default span_key (scores weren't showing up) * use different key in docs example * change defaults to better-working parameters from project (WIP) * register spacy.extract_spans.v1 for legacy purposes * Upd dev version so can build wheel * layers instead of architectures for smaller building blocks * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Update website/docs/api/spancategorizer.md Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Include additional scores from overrides in combined score weights * Parameterize spans key in scoring Parameterize the `SpanCategorizer` `spans_key` for scoring purposes so that it's possible to evaluate multiple `spancat` components in the same pipeline. * Use the (intentionally very short) default spans key `sc` in the `SpanCategorizer` * Adjust the default score weights to include the default key * Adjust the scorer to use `spans_{spans_key}` as the prefix for the returned score * Revert addition of `attr_name` argument to `score_spans` and adjust the key in the `getter` instead. Note that for `spancat` components with a custom `span_key`, the score weights currently need to be modified manually in `[training.score_weights]` for them to be available during training. To suppress the default score weights `spans_sc_p/r/f` during training, set them to `null` in `[training.score_weights]`. * Update website/docs/api/scorer.md * Fix scorer for spans key containing underscore * Increment version * Add Spans to Evaluate CLI (#8439) * Add Spans to Evaluate CLI * Change to spans_key * Add spans per_type output Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Fix spancat GPU issues (#8455) * Fix GPU issues * Require thinc >=8.0.6 * Switch to glorot_uniform_init * Fix and test ngram suggester * Include final ngram in doc for all sizes * Fix ngrams for docs of the same length as ngram size * Handle batches of docs that result in no ngrams * Add tests Co-authored-by: Ines Montani <ines@ines.io> Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> Co-authored-by: Nirant <NirantK@users.noreply.github.com>
2021-06-24 10:35:27 +00:00
> #### Example Config
>
> ```ini
> [components.spancat.suggester]
> @misc = "spacy.ngram_suggester.v1"
> sizes = [1, 2, 3]
> ```
Suggest all spans of the given lengths. Spans are returned as a ragged array of
integers. The array has two columns, indicating the start and end position.
| Name | Description |
| ----------- | -------------------------------------------------------------------------------------------------------------------- |
| `sizes` | The phrase lengths to suggest. For example, `[1, 2]` will suggest phrases consisting of 1 or 2 tokens. ~~List[int]~~ |
🏷 Add Mypy check to CI and ignore all existing Mypy errors (#9167) * 🚨 Ignore all existing Mypy errors * 🏗 Add Mypy check to CI * Add types-mock and types-requests as dev requirements * Add additional type ignore directives * Add types packages to dev-only list in reqs test * Add types-dataclasses for python 3.6 * Add ignore to pretrain * 🏷 Improve type annotation on `run_command` helper The `run_command` helper previously declared that it returned an `Optional[subprocess.CompletedProcess]`, but it isn't actually possible for the function to return `None`. These changes modify the type annotation of the `run_command` helper and remove all now-unnecessary `# type: ignore` directives. * 🔧 Allow variable type redefinition in limited contexts These changes modify how Mypy is configured to allow variables to have their type automatically redefined under certain conditions. The Mypy documentation contains the following example: ```python def process(items: List[str]) -> None: # 'items' has type List[str] items = [item.split() for item in items] # 'items' now has type List[List[str]] ... ``` This configuration change is especially helpful in reducing the number of `# type: ignore` directives needed to handle the common pattern of: * Accepting a filepath as a string * Overwriting the variable using `filepath = ensure_path(filepath)` These changes enable redefinition and remove all `# type: ignore` directives rendered redundant by this change. * 🏷 Add type annotation to converters mapping * 🚨 Fix Mypy error in convert CLI argument verification * 🏷 Improve type annotation on `resolve_dot_names` helper * 🏷 Add type annotations for `Vocab` attributes `strings` and `vectors` * 🏷 Add type annotations for more `Vocab` attributes * 🏷 Add loose type annotation for gold data compilation * 🏷 Improve `_format_labels` type annotation * 🏷 Fix `get_lang_class` type annotation * 🏷 Loosen return type of `Language.evaluate` * 🏷 Don't accept `Scorer` in `handle_scores_per_type` * 🏷 Add `string_to_list` overloads * 🏷 Fix non-Optional command-line options * 🙈 Ignore redefinition of `wandb_logger` in `loggers.py` * ➕ Install `typing_extensions` in Python 3.8+ The `typing_extensions` package states that it should be used when "writing code that must be compatible with multiple Python versions". Since SpaCy needs to support multiple Python versions, it should be used when newer `typing` module members are required. One example of this is `Literal`, which is available starting with Python 3.8. Previously SpaCy tried to import `Literal` from `typing`, falling back to `typing_extensions` if the import failed. However, Mypy doesn't seem to be able to understand what `Literal` means when the initial import means. Therefore, these changes modify how `compat` imports `Literal` by always importing it from `typing_extensions`. These changes also modify how `typing_extensions` is installed, so that it is a requirement for all Python versions, including those greater than or equal to 3.8. * 🏷 Improve type annotation for `Language.pipe` These changes add a missing overload variant to the type signature of `Language.pipe`. Additionally, the type signature is enhanced to allow type checkers to differentiate between the two overload variants based on the `as_tuple` parameter. Fixes #8772 * ➖ Don't install `typing-extensions` in Python 3.8+ After more detailed analysis of how to implement Python version-specific type annotations using SpaCy, it has been determined that by branching on a comparison against `sys.version_info` can be statically analyzed by Mypy well enough to enable us to conditionally use `typing_extensions.Literal`. This means that we no longer need to install `typing_extensions` for Python versions greater than or equal to 3.8! 🎉 These changes revert previous changes installing `typing-extensions` regardless of Python version and modify how we import the `Literal` type to ensure that Mypy treats it properly. * resolve mypy errors for Strict pydantic types * refactor code to avoid missing return statement * fix types of convert CLI command * avoid list-set confustion in debug_data * fix typo and formatting * small fixes to avoid type ignores * fix types in profile CLI command and make it more efficient * type fixes in projects CLI * put one ignore back * type fixes for render * fix render types - the sequel * fix BaseDefault in language definitions * fix type of noun_chunks iterator - yields tuple instead of span * fix types in language-specific modules * 🏷 Expand accepted inputs of `get_string_id` `get_string_id` accepts either a string (in which case it returns its ID) or an ID (in which case it immediately returns the ID). These changes extend the type annotation of `get_string_id` to indicate that it can accept either strings or IDs. * 🏷 Handle override types in `combine_score_weights` The `combine_score_weights` function allows users to pass an `overrides` mapping to override data extracted from the `weights` argument. Since it allows `Optional` dictionary values, the return value may also include `Optional` dictionary values. These changes update the type annotations for `combine_score_weights` to reflect this fact. * 🏷 Fix tokenizer serialization method signatures in `DummyTokenizer` * 🏷 Fix redefinition of `wandb_logger` These changes fix the redefinition of `wandb_logger` by giving a separate name to each `WandbLogger` version. For backwards-compatibility, `spacy.train` still exports `wandb_logger_v3` as `wandb_logger` for now. * more fixes for typing in language * type fixes in model definitions * 🏷 Annotate `_RandomWords.probs` as `NDArray` * 🏷 Annotate `tok2vec` layers to help Mypy * 🐛 Fix `_RandomWords.probs` type annotations for Python 3.6 Also remove an import that I forgot to move to the top of the module 😅 * more fixes for matchers and other pipeline components * quick fix for entity linker * fixing types for spancat, textcat, etc * bugfix for tok2vec * type annotations for scorer * add runtime_checkable for Protocol * type and import fixes in tests * mypy fixes for training utilities * few fixes in util * fix import * 🐵 Remove unused `# type: ignore` directives * 🏷 Annotate `Language._components` * 🏷 Annotate `spacy.pipeline.Pipe` * add doc as property to span.pyi * small fixes and cleanup * explicit type annotations instead of via comment Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: svlandeg <svlandeg@github.com>
2021-10-14 13:21:40 +00:00
| **CREATES** | The suggester function. ~~Callable[[Iterable[Doc], Optional[Ops]], Ragged]~~ |
2021-07-15 08:01:22 +00:00
Website migration from Gatsby to Next (#12058) * Rename all MDX file to `.mdx` * Lock current node version (#11885) * Apply Prettier (#11996) * Minor website fixes (#11974) [ci skip] * fix table * Migrate to Next WEB-17 (#12005) * Initial commit * Run `npx create-next-app@13 next-blog` * Install MDX packages Following: https://github.com/vercel/next.js/blob/77b5f79a4dff453abb62346bf75b14d859539b81/packages/next-mdx/readme.md * Add MDX to Next * Allow Next to handle `.md` and `.mdx` files. * Add VSCode extension recommendation * Disabled TypeScript strict mode for now * Add prettier * Apply Prettier to all files * Make sure to use correct Node version * Add basic implementation for `MDXRemote` * Add experimental Rust MDX parser * Add `/public` * Add SASS support * Remove default pages and styling * Convert to module This allows to use `import/export` syntax * Add import for custom components * Add ability to load plugins * Extract function This will make the next commit easier to read * Allow to handle directories for page creation * Refactoring * Allow to parse subfolders for pages * Extract logic * Redirect `index.mdx` to parent directory * Disabled ESLint during builds * Disabled typescript during build * Remove Gatsby from `README.md` * Rephrase Docker part of `README.md` * Update project structure in `README.md` * Move and rename plugins * Update plugin for wrapping sections * Add dependencies for plugin * Use plugin * Rename wrapper type * Simplify unnessary adding of id to sections The slugified section ids are useless, because they can not be referenced anywhere anyway. The navigation only works if the section has the same id as the heading. * Add plugin for custom attributes on Markdown elements * Add plugin to readd support for tables * Add plugin to fix problem with wrapped images For more details see this issue: https://github.com/mdx-js/mdx/issues/1798 * Add necessary meta data to pages * Install necessary dependencies * Remove outdated MDX handling * Remove reliance on `InlineList` * Use existing Remark components * Remove unallowed heading Before `h1` components where not overwritten and would never have worked and they aren't used anywhere either. * Add missing components to MDX * Add correct styling * Fix broken list * Fix broken CSS classes * Implement layout * Fix links * Fix broken images * Fix pattern image * Fix heading attributes * Rename heading attribute `new` was causing some weird issue, so renaming it to `version` * Update comment syntax in MDX * Merge imports * Fix markdown rendering inside components * Add model pages * Simplify anchors * Fix default value for theme * Add Universe index page * Add Universe categories * Add Universe projects * Fix Next problem with copy Next complains when the server renders something different then the client, therfor we move the differing logic to `useEffect` * Fix improper component nesting Next doesn't allow block elements inside a `<p>` * Replace landing page MDX with page component * Remove inlined iframe content * Remove ability to inline HTML content in iFrames * Remove MDX imports * Fix problem with image inside link in MDX * Escape character for MDX * Fix unescaped characters in MDX * Fix headings with logo * Allow to export static HTML pages * Add prebuild script This command is automatically run by Next * Replace `svg-loader` with `react-inlinesvg` `svg-loader` is no longer maintained * Fix ESLint `react-hooks/exhaustive-deps` * Fix dropdowns * Change code language from `cli` to `bash` * Remove unnessary language `none` * Fix invalid code language `markdown_` with an underscore was used to basically turn of syntax highlighting, but using unknown languages know throws an error. * Enable code blocks plugin * Readd `InlineCode` component MDX2 removed the `inlineCode` component > The special component name `inlineCode` was removed, we recommend to use `pre` for the block version of code, and code for both the block and inline versions Source: https://mdxjs.com/migrating/v2/#update-mdx-content * Remove unused code * Extract function to own file * Fix code syntax highlighting * Update syntax for code block meta data * Remove unused prop * Fix internal link recognition There is a problem with regex between Node and browser, and since Next runs the component on both, this create an error. `Prop `rel` did not match. Server: "null" Client: "noopener nofollow noreferrer"` This simplifies the implementation and fixes the above error. * Replace `react-helmet` with `next/head` * Fix `className` problem for JSX component * Fix broken bold markdown * Convert file to `.mjs` to be used by Node process * Add plugin to replace strings * Fix custom table row styling * Fix problem with `span` inside inline `code` React doesn't allow a `span` inside an inline `code` element and throws an error in dev mode. * Add `_document` to be able to customize `<html>` and `<body>` * Add `lang="en"` * Store Netlify settings in file This way we don't need to update via Netlify UI, which can be tricky if changing build settings. * Add sitemap * Add Smartypants * Add PWA support * Add `manifest.webmanifest` * Fix bug with anchor links after reloading There was no need for the previous implementation, since the browser handles this nativly. Additional the manual scrolling into view was actually broken, because the heading would disappear behind the menu bar. * Rename custom event I was googeling for ages to find out what kind of event `inview` is, only to figure out it was a custom event with a name that sounds pretty much like a native one. 🫠 * Fix missing comment syntax highlighting * Refactor Quickstart component The previous implementation was hidding the irrelevant lines via data-props and dynamically generated CSS. This created problems with Next and was also hard to follow. CSS was used to do what React is supposed to handle. The new implementation simplfy filters the list of children (React elements) via their props. * Fix syntax highlighting for Training Quickstart * Unify code rendering * Improve error logging in Juniper * Fix Juniper component * Automatically generate "Read Next" link * Add Plausible * Use recent DocSearch component and adjust styling * Fix images * Turn of image optimization > Image Optimization using Next.js' default loader is not compatible with `next export`. We currently deploy to Netlify via `next export` * Dont build pages starting with `_` * Remove unused files * Add Next plugin to Netlify * Fix button layout MDX automatically adds `p` tags around text on a new line and Prettier wants to put the text on a new line. Hacking with JSX string. * Add 404 page * Apply Prettier * Update Prettier for `package.json` Next sometimes wants to patch `package-lock.json`. The old Prettier setting indended with 4 spaces, but Next always indends with 2 spaces. Since `npm install` automatically uses the indendation from `package.json` for `package-lock.json` and to avoid the format switching back and forth, both files are now set to 2 spaces. * Apply Next patch to `package-lock.json` When starting the dev server Next would warn `warn - Found lockfile missing swc dependencies, patching...` and update the `package-lock.json`. These are the patched changes. * fix link Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * small backslash fixes * adjust to new style Co-authored-by: Marcus Blättermann <marcus@essenmitsosse.de>
2023-01-11 16:30:07 +00:00
### spacy.ngram_range_suggester.v1 {id="ngram_range_suggester"}
2021-07-15 08:01:22 +00:00
> #### Example Config
>
> ```ini
> [components.spancat.suggester]
> @misc = "spacy.ngram_range_suggester.v1"
> min_size = 2
> max_size = 4
> ```
Suggest all spans of at least length `min_size` and at most length `max_size`
(both inclusive). Spans are returned as a ragged array of integers. The array
has two columns, indicating the start and end position.
🏷 Add Mypy check to CI and ignore all existing Mypy errors (#9167) * 🚨 Ignore all existing Mypy errors * 🏗 Add Mypy check to CI * Add types-mock and types-requests as dev requirements * Add additional type ignore directives * Add types packages to dev-only list in reqs test * Add types-dataclasses for python 3.6 * Add ignore to pretrain * 🏷 Improve type annotation on `run_command` helper The `run_command` helper previously declared that it returned an `Optional[subprocess.CompletedProcess]`, but it isn't actually possible for the function to return `None`. These changes modify the type annotation of the `run_command` helper and remove all now-unnecessary `# type: ignore` directives. * 🔧 Allow variable type redefinition in limited contexts These changes modify how Mypy is configured to allow variables to have their type automatically redefined under certain conditions. The Mypy documentation contains the following example: ```python def process(items: List[str]) -> None: # 'items' has type List[str] items = [item.split() for item in items] # 'items' now has type List[List[str]] ... ``` This configuration change is especially helpful in reducing the number of `# type: ignore` directives needed to handle the common pattern of: * Accepting a filepath as a string * Overwriting the variable using `filepath = ensure_path(filepath)` These changes enable redefinition and remove all `# type: ignore` directives rendered redundant by this change. * 🏷 Add type annotation to converters mapping * 🚨 Fix Mypy error in convert CLI argument verification * 🏷 Improve type annotation on `resolve_dot_names` helper * 🏷 Add type annotations for `Vocab` attributes `strings` and `vectors` * 🏷 Add type annotations for more `Vocab` attributes * 🏷 Add loose type annotation for gold data compilation * 🏷 Improve `_format_labels` type annotation * 🏷 Fix `get_lang_class` type annotation * 🏷 Loosen return type of `Language.evaluate` * 🏷 Don't accept `Scorer` in `handle_scores_per_type` * 🏷 Add `string_to_list` overloads * 🏷 Fix non-Optional command-line options * 🙈 Ignore redefinition of `wandb_logger` in `loggers.py` * ➕ Install `typing_extensions` in Python 3.8+ The `typing_extensions` package states that it should be used when "writing code that must be compatible with multiple Python versions". Since SpaCy needs to support multiple Python versions, it should be used when newer `typing` module members are required. One example of this is `Literal`, which is available starting with Python 3.8. Previously SpaCy tried to import `Literal` from `typing`, falling back to `typing_extensions` if the import failed. However, Mypy doesn't seem to be able to understand what `Literal` means when the initial import means. Therefore, these changes modify how `compat` imports `Literal` by always importing it from `typing_extensions`. These changes also modify how `typing_extensions` is installed, so that it is a requirement for all Python versions, including those greater than or equal to 3.8. * 🏷 Improve type annotation for `Language.pipe` These changes add a missing overload variant to the type signature of `Language.pipe`. Additionally, the type signature is enhanced to allow type checkers to differentiate between the two overload variants based on the `as_tuple` parameter. Fixes #8772 * ➖ Don't install `typing-extensions` in Python 3.8+ After more detailed analysis of how to implement Python version-specific type annotations using SpaCy, it has been determined that by branching on a comparison against `sys.version_info` can be statically analyzed by Mypy well enough to enable us to conditionally use `typing_extensions.Literal`. This means that we no longer need to install `typing_extensions` for Python versions greater than or equal to 3.8! 🎉 These changes revert previous changes installing `typing-extensions` regardless of Python version and modify how we import the `Literal` type to ensure that Mypy treats it properly. * resolve mypy errors for Strict pydantic types * refactor code to avoid missing return statement * fix types of convert CLI command * avoid list-set confustion in debug_data * fix typo and formatting * small fixes to avoid type ignores * fix types in profile CLI command and make it more efficient * type fixes in projects CLI * put one ignore back * type fixes for render * fix render types - the sequel * fix BaseDefault in language definitions * fix type of noun_chunks iterator - yields tuple instead of span * fix types in language-specific modules * 🏷 Expand accepted inputs of `get_string_id` `get_string_id` accepts either a string (in which case it returns its ID) or an ID (in which case it immediately returns the ID). These changes extend the type annotation of `get_string_id` to indicate that it can accept either strings or IDs. * 🏷 Handle override types in `combine_score_weights` The `combine_score_weights` function allows users to pass an `overrides` mapping to override data extracted from the `weights` argument. Since it allows `Optional` dictionary values, the return value may also include `Optional` dictionary values. These changes update the type annotations for `combine_score_weights` to reflect this fact. * 🏷 Fix tokenizer serialization method signatures in `DummyTokenizer` * 🏷 Fix redefinition of `wandb_logger` These changes fix the redefinition of `wandb_logger` by giving a separate name to each `WandbLogger` version. For backwards-compatibility, `spacy.train` still exports `wandb_logger_v3` as `wandb_logger` for now. * more fixes for typing in language * type fixes in model definitions * 🏷 Annotate `_RandomWords.probs` as `NDArray` * 🏷 Annotate `tok2vec` layers to help Mypy * 🐛 Fix `_RandomWords.probs` type annotations for Python 3.6 Also remove an import that I forgot to move to the top of the module 😅 * more fixes for matchers and other pipeline components * quick fix for entity linker * fixing types for spancat, textcat, etc * bugfix for tok2vec * type annotations for scorer * add runtime_checkable for Protocol * type and import fixes in tests * mypy fixes for training utilities * few fixes in util * fix import * 🐵 Remove unused `# type: ignore` directives * 🏷 Annotate `Language._components` * 🏷 Annotate `spacy.pipeline.Pipe` * add doc as property to span.pyi * small fixes and cleanup * explicit type annotations instead of via comment Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: svlandeg <svlandeg@github.com>
2021-10-14 13:21:40 +00:00
| Name | Description |
| ----------- | ---------------------------------------------------------------------------- |
| `min_size` | The minimal phrase lengths to suggest (inclusive). ~~[int]~~ |
| `max_size` | The maximal phrase lengths to suggest (exclusive). ~~[int]~~ |
| **CREATES** | The suggester function. ~~Callable[[Iterable[Doc], Optional[Ops]], Ragged]~~ |