spaCy/spacy/cli/pretrain.py

'''This script is experimental.

Try pre-training the CNN component of the text categorizer using a cheap
language modelling-like objective. Specifically, we load pre-trained vectors
(from something like word2vec, GloVe, FastText etc), and use the CNN to
predict the tokens' pre-trained vectors. This isn't as easy as it sounds:
we're not merely doing compression here, because heavy dropout is applied,
including over the input words. This means the model must often (50% of the time)
use the context in order to predict the word.

To evaluate the technique, we're pre-training with the 50k texts from the IMDB
corpus, and then training with only 100 labels. Note that it's a bit dirty to
pre-train with the development data, but also not *so* terrible: we're not using
the development labels, after all --- only the unlabelled text.
'''
from __future__ import print_function, unicode_literals
import plac
import random
import numpy
import time
import ujson as json
from pathlib import Path
import sys
from collections import Counter

import spacy
from spacy.attrs import ID
from spacy.util import minibatch, minibatch_by_words, use_gpu, compounding, ensure_path
from spacy._ml import Tok2Vec, flatten, chain, zero_init, create_default_optimizer
from thinc.v2v import Affine


def prefer_gpu():
    used = spacy.util.use_gpu(0)
    if used is None:
        return False
    else:
        import cupy.random
        cupy.random.seed(0)
        return True


def load_texts(path):
    '''Load inputs from a jsonl file.
    
    Each line should be a dict like {"text": "..."}
    '''
    path = ensure_path(path)
    with path.open('r', encoding='utf8') as file_:
        texts = [json.loads(line)['text'] for line in file_]
    random.shuffle(texts)
    return texts

def stream_texts():
    for line in sys.stdin:
        yield json.loads(line)['text']


def make_update(model, docs, optimizer, drop=0.):
    """Perform an update over a single batch of documents.

    docs (iterable): A batch of `Doc` objects.
    drop (float): The droput rate.
    optimizer (callable): An optimizer.
    RETURNS loss: A float for the loss.
    """
    predictions, backprop = model.begin_update(docs, drop=drop)
    loss, gradients = get_vectors_loss(model.ops, docs, predictions)
    backprop(gradients, sgd=optimizer)
    return loss


def get_vectors_loss(ops, docs, prediction):
    """Compute a mean-squared error loss between the documents' vectors and
    the prediction.    

    Note that this is ripe for customization! We could compute the vectors
    in some other word, e.g. with an LSTM language model, or use some other
    type of objective.
    """
    # The simplest way to implement this would be to vstack the
    # token.vector values, but that's a bit inefficient, especially on GPU.
    # Instead we fetch the index into the vectors table for each of our tokens,
    # and look them up all at once. This prevents data copying.
    ids = ops.flatten([doc.to_array(ID).ravel() for doc in docs])
    target = docs[0].vocab.vectors.data[ids]
    d_scores = (prediction - target) / prediction.shape[0]
    # Don't want to return a cupy object here
    loss = float((d_scores**2).sum())
    return loss, d_scores


def create_pretraining_model(nlp, tok2vec):
    '''Define a network for the pretraining. We simply add an output layer onto
    the tok2vec input model. The tok2vec input model needs to be a model that
    takes a batch of Doc objects (as a list), and returns a list of arrays.
    Each array in the output needs to have one row per token in the doc.
    '''
    output_size = nlp.vocab.vectors.data.shape[1]
    output_layer = zero_init(Affine(output_size, drop_factor=0.0))
    # This is annoying, but the parser etc have the flatten step after
    # the tok2vec. To load the weights in cleanly, we need to match
    # the shape of the models' components exactly. So what we cann
    # "tok2vec" has to be the same set of processes as what the components do.
    tok2vec = chain(tok2vec, flatten)
    model = chain(
        tok2vec,
        output_layer
    )
    model.tok2vec = tok2vec
    model.output_layer = output_layer
    model.begin_training([nlp.make_doc('Give it a doc to infer shapes')])
    return model


class ProgressTracker(object):
    def __init__(self, frequency=100000):
        self.loss = 0.
        self.nr_word = 0
        self.words_per_epoch = Counter()
        self.frequency = frequency
        self.last_time = time.time()
        self.last_update = 0

    def update(self, epoch, loss, docs):
        self.loss += loss
        words_in_batch = sum(len(doc) for doc in docs)
        self.words_per_epoch[epoch] += words_in_batch
        self.nr_word += words_in_batch
        words_since_update = self.nr_word - self.last_update
        if words_since_update >= self.frequency:
            wps = words_since_update / (time.time() - self.last_time)
            self.last_update = self.nr_word
            self.last_time = time.time()
            status = (epoch, self.nr_word, '%.5f' % self.loss, int(wps))
            return status
        else:
            return None


@plac.annotations(
    texts_loc=("Path to jsonl file with texts to learn from", "positional", None, str),
    vectors_model=("Name or path to vectors model to learn from"),
    output_dir=("Directory to write models each epoch", "positional", None, str),
    width=("Width of CNN layers", "option", "cw", int),
    depth=("Depth of CNN layers", "option", "cd", int),
    embed_rows=("Embedding rows", "option", "er", int),
    dropout=("Dropout", "option", "d", float),
    seed=("Seed for random number generators", "option", "s", float),
    nr_iter=("Number of iterations to pretrain", "option", "i", int),
)
def pretrain(texts_loc, vectors_model, output_dir, width=128, depth=4,
        embed_rows=1000, dropout=0.2, nr_iter=10, seed=0):
    """
    Pre-train the 'token-to-vector' (tok2vec) layer of pipeline components,
    using an approximate language-modelling objective. Specifically, we load
    pre-trained vectors, and train a component like a CNN, BiLSTM, etc to predict
    vectors which match the pre-trained ones. The weights are saved to a directory
    after each epoch. You can then pass a path to one of these pre-trained weights
    files to the 'spacy train' command.

    This technique may be especially helpful if you have little labelled data.
    However, it's still quite experimental, so your mileage may vary.

    To load the weights back in during 'spacy train', you need to ensure
    all settings are the same between pretraining and training. The API and
    errors around this need some improvement.
    """
    config = dict(locals())
    output_dir = ensure_path(output_dir)
    random.seed(seed)
    numpy.random.seed(seed)
    if not output_dir.exists():
        output_dir.mkdir()
    with (output_dir / 'config.json').open('w') as file_:
        file_.write(json.dumps(config))
    has_gpu = prefer_gpu()
    nlp = spacy.load(vectors_model)
    model = create_pretraining_model(nlp,
                Tok2Vec(width, embed_rows,
                    conv_depth=depth,
                    pretrained_vectors=nlp.vocab.vectors.name,
                    bilstm_depth=0, # Requires PyTorch. Experimental.
                    cnn_maxout_pieces=2, # You can try setting this higher
                    subword_features=True)) # Set to False for character models, e.g. Chinese
    optimizer = create_default_optimizer(model.ops)
    tracker = ProgressTracker()
    print('Epoch', '#Words', 'Loss', 'w/s')
    texts = stream_texts() if texts_loc == '-' else load_texts(texts_loc) 
    for epoch in range(nr_iter):
        for batch in minibatch(texts, size=64):
            docs = [nlp.make_doc(text) for text in batch]
            loss = make_update(model, docs, optimizer, drop=dropout)
            progress = tracker.update(epoch, loss, docs)
            if progress:
                print(*progress)
                if texts_loc == '-' and tracker.words_per_epoch[epoch] >= 10**6:
                    break
        with model.use_params(optimizer.averages):
            with (output_dir / ('model%d.bin' % epoch)).open('wb') as file_:
                file_.write(model.tok2vec.to_bytes())
            with (output_dir / 'log.jsonl').open('a') as file_:
                file_.write(json.dumps({'nr_word': tracker.nr_word,
                    'loss': tracker.loss, 'epoch': epoch}))
        if texts_loc != '-':
            texts = load_texts(texts_loc)