2020-09-21 14:58:40 +00:00
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from typing import Dict, Any, Optional, Iterable
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2020-07-10 17:47:53 +00:00
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from pathlib import Path
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2020-09-21 21:09:22 +00:00
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from spacy.training import Example
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from spacy.util import dot_to_object
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2020-07-10 17:47:53 +00:00
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from wasabi import msg
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2020-09-28 13:09:59 +00:00
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from thinc.api import fix_random_seed, set_dropout_rate, Adam
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2020-09-18 23:17:02 +00:00
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from thinc.api import Model, data_validation, set_gpu_allocator
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2020-07-22 11:42:59 +00:00
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import typer
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2020-07-10 17:47:53 +00:00
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2020-09-13 08:55:36 +00:00
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from ._util import Arg, Opt, debug_cli, show_validation_error
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2020-09-28 13:09:59 +00:00
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from ._util import parse_config_overrides, string_to_list, setup_gpu
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from ..schemas import ConfigSchemaTraining
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from ..util import registry
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2020-07-10 17:47:53 +00:00
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from .. import util
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2020-07-12 11:53:41 +00:00
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@debug_cli.command("model")
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2020-07-10 17:47:53 +00:00
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def debug_model_cli(
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# fmt: off
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2020-07-22 11:42:59 +00:00
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ctx: typer.Context, # This is only used to read additional arguments
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2020-07-10 17:47:53 +00:00
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config_path: Path = Arg(..., help="Path to config file", exists=True),
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2020-07-31 15:58:55 +00:00
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component: str = Arg(..., help="Name of the pipeline component of which the model should be analysed"),
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2020-07-22 11:42:59 +00:00
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layers: str = Opt("", "--layers", "-l", help="Comma-separated names of layer IDs to print"),
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2020-07-10 17:47:53 +00:00
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dimensions: bool = Opt(False, "--dimensions", "-DIM", help="Show dimensions"),
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parameters: bool = Opt(False, "--parameters", "-PAR", help="Show parameters"),
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gradients: bool = Opt(False, "--gradients", "-GRAD", help="Show gradients"),
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attributes: bool = Opt(False, "--attributes", "-ATTR", help="Show attributes"),
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P0: bool = Opt(False, "--print-step0", "-P0", help="Print model before training"),
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P1: bool = Opt(False, "--print-step1", "-P1", help="Print model after initialization"),
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P2: bool = Opt(False, "--print-step2", "-P2", help="Print model after training"),
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2020-07-31 15:36:32 +00:00
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P3: bool = Opt(False, "--print-step3", "-P3", help="Print final predictions"),
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2020-07-22 14:53:41 +00:00
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use_gpu: int = Opt(-1, "--gpu-id", "-g", help="GPU ID or -1 for CPU")
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2020-07-10 17:47:53 +00:00
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# fmt: on
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):
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"""
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2020-07-12 11:53:41 +00:00
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Analyze a Thinc model implementation. Includes checks for internal structure
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and activations during training.
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2020-09-04 10:58:50 +00:00
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DOCS: https://nightly.spacy.io/api/cli#debug-model
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2020-07-10 17:47:53 +00:00
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"""
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2020-09-28 13:09:59 +00:00
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setup_gpu(use_gpu)
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2020-09-12 12:43:22 +00:00
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layers = string_to_list(layers, intify=True)
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2020-07-10 17:47:53 +00:00
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print_settings = {
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"dimensions": dimensions,
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"parameters": parameters,
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"gradients": gradients,
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"attributes": attributes,
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2020-09-12 12:43:22 +00:00
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"layers": layers,
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2020-07-10 17:47:53 +00:00
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"print_before_training": P0,
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"print_after_init": P1,
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"print_after_training": P2,
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"print_prediction": P3,
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}
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2020-07-22 11:42:59 +00:00
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config_overrides = parse_config_overrides(ctx.args)
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2020-08-02 13:18:30 +00:00
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with show_validation_error(config_path):
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2020-09-27 20:21:31 +00:00
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raw_config = util.load_config(
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config_path, overrides=config_overrides, interpolate=False
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2020-09-18 23:17:02 +00:00
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)
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2020-09-27 20:21:31 +00:00
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config = raw_config.iterpolate()
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allocator = config["training"]["gpu_allocator"]
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if use_gpu >= 0 and allocator:
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set_gpu_allocator(allocator)
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with show_validation_error(config_path):
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nlp = util.load_model_from_config(raw_config)
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2020-09-28 13:34:00 +00:00
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T = registry.resolve(
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nlp.config.interpolate()["training"], schema=ConfigSchemaTraining
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)
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2020-09-28 13:09:59 +00:00
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seed = T["seed"]
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2020-07-10 17:47:53 +00:00
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if seed is not None:
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msg.info(f"Fixing random seed: {seed}")
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fix_random_seed(seed)
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2020-07-31 15:58:55 +00:00
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pipe = nlp.get_pipe(component)
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2020-09-17 20:34:36 +00:00
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if not hasattr(pipe, "model"):
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2020-07-22 11:42:59 +00:00
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msg.fail(
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f"The component '{component}' does not specify an object that holds a Model.",
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exits=1,
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)
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2020-09-17 20:34:36 +00:00
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model = pipe.model
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2020-09-28 13:09:59 +00:00
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debug_model(T, nlp, model, print_settings=print_settings)
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2020-07-22 11:42:59 +00:00
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2020-09-21 21:17:23 +00:00
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def debug_model(
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config, nlp, model: Model, *, print_settings: Optional[Dict[str, Any]] = None
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):
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2020-07-22 11:42:59 +00:00
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if not isinstance(model, Model):
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msg.fail(
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f"Requires a Thinc Model to be analysed, but found {type(model)} instead.",
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exits=1,
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)
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2020-07-10 17:47:53 +00:00
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if print_settings is None:
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print_settings = {}
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# STEP 0: Printing before training
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msg.info(f"Analysing model with ID {model.id}")
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if print_settings.get("print_before_training"):
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2020-07-31 16:06:48 +00:00
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msg.divider(f"STEP 0 - before training")
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2020-07-10 17:47:53 +00:00
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_print_model(model, print_settings)
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# STEP 1: Initializing the model and printing again
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2020-09-08 20:44:25 +00:00
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X = _get_docs()
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2020-07-31 14:49:42 +00:00
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# The output vector might differ from the official type of the output layer
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with data_validation(False):
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2020-09-21 21:09:22 +00:00
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try:
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train_corpus = dot_to_object(config, config["training"]["train_corpus"])
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2020-09-28 19:35:09 +00:00
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nlp.initialize(lambda: train_corpus(nlp))
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2020-09-21 21:09:22 +00:00
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msg.info("Initialized the model with the training corpus.")
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except ValueError:
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try:
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_set_output_dim(nO=7, model=model)
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2020-09-28 19:35:09 +00:00
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nlp.initialize(lambda: [Example.from_dict(x, {}) for x in X])
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2020-09-21 21:09:22 +00:00
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msg.info("Initialized the model with dummy data.")
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2020-09-27 20:21:31 +00:00
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except Exception:
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2020-09-21 21:17:23 +00:00
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msg.fail(
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"Could not initialize the model: you'll have to provide a valid train_corpus argument in the config file.",
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exits=1,
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)
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2020-09-21 21:09:22 +00:00
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2020-07-10 17:47:53 +00:00
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if print_settings.get("print_after_init"):
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2020-07-31 16:06:48 +00:00
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msg.divider(f"STEP 1 - after initialization")
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2020-07-10 17:47:53 +00:00
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_print_model(model, print_settings)
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# STEP 2: Updating the model and printing again
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optimizer = Adam(0.001)
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set_dropout_rate(model, 0.2)
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2020-09-18 14:43:15 +00:00
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# ugly hack to deal with Tok2Vec listeners
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tok2vec = None
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if model.has_ref("tok2vec") and model.get_ref("tok2vec").name == "tok2vec-listener":
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tok2vec = nlp.get_pipe("tok2vec")
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2020-09-21 14:58:40 +00:00
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goldY = None
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2020-07-10 17:47:53 +00:00
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for e in range(3):
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2020-09-18 14:43:15 +00:00
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if tok2vec:
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2020-09-22 19:54:52 +00:00
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tok2vec.update([Example.from_dict(x, {}) for x in X])
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2020-09-18 14:43:15 +00:00
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Y, get_dX = model.begin_update(X)
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2020-09-21 21:09:22 +00:00
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if goldY is None:
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2020-09-21 14:58:40 +00:00
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goldY = _simulate_gold(Y)
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dY = get_gradient(goldY, Y, model.ops)
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2020-07-10 18:52:00 +00:00
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get_dX(dY)
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2020-07-10 17:47:53 +00:00
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model.finish_update(optimizer)
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if print_settings.get("print_after_training"):
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2020-07-31 16:06:48 +00:00
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msg.divider(f"STEP 2 - after training")
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2020-07-10 17:47:53 +00:00
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_print_model(model, print_settings)
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# STEP 3: the final prediction
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2020-09-18 14:43:15 +00:00
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prediction = model.predict(X)
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2020-07-10 17:47:53 +00:00
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if print_settings.get("print_prediction"):
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2020-07-31 16:06:48 +00:00
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msg.divider(f"STEP 3 - prediction")
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msg.info(str(prediction))
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2020-07-10 17:47:53 +00:00
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2020-09-21 14:58:40 +00:00
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msg.good(f"Succesfully ended analysis - model looks good.")
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2020-09-17 20:34:36 +00:00
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2020-07-10 17:47:53 +00:00
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2020-09-21 21:17:23 +00:00
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def get_gradient(goldY, Y, ops):
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return ops.asarray(Y) - ops.asarray(goldY)
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2020-09-21 14:58:40 +00:00
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def _simulate_gold(element, counter=1):
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if isinstance(element, Iterable):
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for i in range(len(element)):
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2020-09-21 21:17:23 +00:00
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element[i] = _simulate_gold(element[i], counter + i)
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2020-09-21 14:58:40 +00:00
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return element
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else:
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2020-09-21 21:17:23 +00:00
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return 1 / counter
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2020-07-10 17:47:53 +00:00
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def _sentences():
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return [
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"Apple is looking at buying U.K. startup for $1 billion",
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"Autonomous cars shift insurance liability toward manufacturers",
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"San Francisco considers banning sidewalk delivery robots",
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"London is a big city in the United Kingdom.",
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]
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2020-08-05 14:00:59 +00:00
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def _get_docs(lang: str = "en"):
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nlp = util.get_lang_class(lang)()
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2020-07-10 17:47:53 +00:00
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return list(nlp.pipe(_sentences()))
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2020-09-21 14:58:40 +00:00
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def _set_output_dim(model, nO):
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# simulating dim inference by directly setting the nO argument of the model
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if model.has_dim("nO") is None:
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model.set_dim("nO", nO)
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if model.has_ref("output_layer"):
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if model.get_ref("output_layer").has_dim("nO") is None:
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model.get_ref("output_layer").set_dim("nO", nO)
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2020-09-19 17:11:30 +00:00
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2020-07-10 17:47:53 +00:00
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def _print_model(model, print_settings):
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layers = print_settings.get("layers", "")
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parameters = print_settings.get("parameters", False)
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dimensions = print_settings.get("dimensions", False)
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gradients = print_settings.get("gradients", False)
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attributes = print_settings.get("attributes", False)
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for i, node in enumerate(model.walk()):
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if not layers or i in layers:
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msg.info(f"Layer {i}: model ID {node.id}: '{node.name}'")
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if dimensions:
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for name in node.dim_names:
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if node.has_dim(name):
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msg.info(f" - dim {name}: {node.get_dim(name)}")
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else:
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msg.info(f" - dim {name}: {node.has_dim(name)}")
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if parameters:
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for name in node.param_names:
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if node.has_param(name):
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print_value = _print_matrix(node.get_param(name))
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msg.info(f" - param {name}: {print_value}")
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else:
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msg.info(f" - param {name}: {node.has_param(name)}")
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if gradients:
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for name in node.param_names:
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if node.has_grad(name):
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print_value = _print_matrix(node.get_grad(name))
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msg.info(f" - grad {name}: {print_value}")
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else:
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msg.info(f" - grad {name}: {node.has_grad(name)}")
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if attributes:
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attrs = node.attrs
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for name, value in attrs.items():
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msg.info(f" - attr {name}: {value}")
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def _print_matrix(value):
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if value is None or isinstance(value, bool):
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return value
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result = str(value.shape) + " - sample: "
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sample_matrix = value
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for d in range(value.ndim - 1):
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sample_matrix = sample_matrix[0]
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sample_matrix = sample_matrix[0:5]
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result = result + str(sample_matrix)
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return result
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