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spaCy/spacy/gold.pxd

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* Refactored transition system code now compiling. Still need to hook up label oracle, and test
2015-02-22 05:32:07 +00:00
from cymem.cymem cimport Pool
* Add file to hold GoldParse class
2015-02-21 16:06:58 +00:00
WIP on stringstore change. 27 failures
2017-05-28 12:06:40 +00:00
from .typedefs cimport attr_t
* Move spacy.syntax.conll to spacy.gold
2015-05-24 19:35:02 +00:00
from .syntax.transition_system cimport Transition
* Tmp
2015-03-09 05:46:22 +00:00
Tidy up compiler flags and imports (#5071)
2020-03-02 10:48:10 +00:00
from .tokens import Doc
* Have oracle functions take a struct instead of a Python object
2015-06-02 18:01:06 +00:00
cdef struct GoldParseC:
int* tags
int* heads
Fix arc eager label costs for uint64
2017-05-30 18:37:24 +00:00
int* has_dep
Add support for sent_start to GoldParse
2017-08-26 01:03:14 +00:00
int* sent_start
WIP on stringstore change. 27 failures
2017-05-28 12:06:40 +00:00
attr_t* labels
* Have oracle functions take a struct instead of a Python object
2015-06-02 18:01:06 +00:00
int** brackets
Transition* ner
* Add file to hold GoldParse class
2015-02-21 16:06:58 +00:00
cdef class GoldParse:
* Refactored transition system code now compiling. Still need to hook up label oracle, and test
2015-02-22 05:32:07 +00:00
cdef Pool mem
* Have oracle functions take a struct instead of a Python object
2015-06-02 18:01:06 +00:00
cdef GoldParseC c
Example class for training data (#4543) * OrigAnnot class instead of gold.orig_annot list of zipped tuples * from_orig to replace from_annot_tuples * rename to RawAnnot * some unit tests for GoldParse creation and internal format * removing orig_annot and switching to lists instead of tuple * rewriting tuples to use RawAnnot (+ debug statements, WIP) * fix pop() changing the data * small fixes * pop-append fixes * return RawAnnot for existing GoldParse to have uniform interface * clean up imports * fix merge_sents * add unit test for 4402 with new structure (not working yet) * introduce DocAnnot * typo fixes * add unit test for merge_sents * rename from_orig to from_raw * fixing unit tests * fix nn parser * read_annots to produce text, doc_annot pairs * _make_golds fix * rename golds_to_gold_annots * small fixes * fix encoding * have golds_to_gold_annots use DocAnnot * missed a spot * merge_sents as function in DocAnnot * allow specifying only part of the token-level annotations * refactor with Example class + underlying dicts * pipeline components to work with Example objects (wip) * input checking * fix yielding * fix calls to update * small fixes * fix scorer unit test with new format * fix kwargs order * fixes for ud and conllu scripts * fix reading data for conllu script * add in proper errors (not fixed numbering yet to avoid merge conflicts) * fixing few more small bugs * fix EL script
2019-11-11 16:35:27 +00:00
cdef readonly TokenAnnotation orig
* Have oracle functions take a struct instead of a Python object
2015-06-02 18:01:06 +00:00
* Refactored transition system code now compiling. Still need to hook up label oracle, and test
2015-02-22 05:32:07 +00:00
cdef int length
Make GoldParse attributes writeable
2017-05-22 09:50:29 +00:00
cdef public int loss
cdef public list words
cdef public list tags
Add support for pos/morphs/lemmas in training data (#4941) Add support for pos/morphs/lemmas throughout `GoldParse`, `Example`, and `docs_to_json()`.
2020-01-28 10:36:29 +00:00
cdef public list pos
Restructure Example with merged sents as default (#4632) * Switch to train_dataset() function in train CLI * Fixes for pipe() methods in pipeline components * Don't clobber `examples` variable with `as_example` in pipe() methods * Remove unnecessary traversals of `examples` * Update Parser.pipe() for Examples * Add `as_examples` kwarg to `pipe()` with implementation to return `Example`s * Accept `Doc` or `Example` in `pipe()` with `_get_doc()` (copied from `Pipe`) * Fixes to Example implementation in spacy.gold * Move `make_projective` from an attribute of Example to an argument of `Example.get_gold_parses()` * Head of 0 are not treated as unset * Unset heads are set to self rather than `None` (which causes problems while projectivizing) * Check for `Doc` (not just not `None`) when creating GoldParses for pre-merged example * Don't clobber `examples` variable in `iter_gold_docs()` * Add/modify gold tests for handling projectivity * In JSON roundtrip compare results from `dev_dataset` rather than `train_dataset` to avoid projectivization (and other potential modifications) * Add test for projective train vs. nonprojective dev versions of the same `Doc` * Handle ignore_misaligned as arg rather than attr Move `ignore_misaligned` from an attribute of `Example` to an argument to `Example.get_gold_parses()`, which makes it parallel to `make_projective`. Add test with old and new align that checks whether `ignore_misaligned` errors are raised as expected (only for new align). * Remove unused attrs from gold.pxd Remove `ignore_misaligned` and `make_projective` from `gold.pxd` * Restructure Example with merged sents as default An `Example` now includes a single `TokenAnnotation` that includes all the information from one `Doc` (=JSON `paragraph`). If required, the individual sentences can be returned as a list of examples with `Example.split_sents()` with no raw text available. * Input/output a single `Example.token_annotation` * Add `sent_starts` to `TokenAnnotation` to handle sentence boundaries * Replace `Example.merge_sents()` with `Example.split_sents()` * Modify components to use a single `Example.token_annotation` * Pipeline components * conllu2json converter * Rework/rename `add_token_annotation()` and `add_doc_annotation()` to `set_token_annotation()` and `set_doc_annotation()`, functions that set rather then appending/extending. * Rename `morphology` to `morphs` in `TokenAnnotation` and `GoldParse` * Add getters to `TokenAnnotation` to supply default values when a given attribute is not available * `Example.get_gold_parses()` in `spacy.gold._make_golds()` is only applied on single examples, so the `GoldParse` is returned saved in the provided `Example` rather than creating a new `Example` with no other internal annotation * Update tests for API changes and `merge_sents()` vs. `split_sents()` * Refer to Example.goldparse in iter_gold_docs() Use `Example.goldparse` in `iter_gold_docs()` instead of `Example.gold` because a `None` `GoldParse` is generated with ignore_misaligned and generating it on-the-fly can raise an unwanted AlignmentError * Fix make_orth_variants() Fix bug in make_orth_variants() related to conversion from multiple to one TokenAnnotation per Example. * Add basic test for make_orth_variants() * Replace try/except with conditionals * Replace default morph value with set
2019-11-25 15:03:28 +00:00
cdef public list morphs
Add lemmas to GoldParse / Example / docs_to_json (#4726)
2019-11-28 13:53:44 +00:00
cdef public list lemmas
Add a tagger-based SentenceRecognizer (#4713) * Add sent_starts to GoldParse * Add SentTagger pipeline component Add `SentTagger` pipeline component as a subclass of `Tagger`. * Model reduces default parameters from `Tagger` to be small and fast * Hard-coded set of two labels: * S (1): token at beginning of sentence * I (0): all other sentence positions * Sets `token.sent_start` values * Add sentence segmentation to Scorer Report `sent_p/r/f` for sentence boundaries, which may be provided by various pipeline components. * Add sentence segmentation to CLI evaluate * Add senttagger metrics/scoring to train CLI * Rename SentTagger to SentenceRecognizer * Add SentenceRecognizer to spacy.pipes imports * Add SentenceRecognizer serialization test * Shorten component name to sentrec * Remove duplicates from train CLI output metrics
2019-11-28 10:10:07 +00:00
cdef public list sent_starts
Make GoldParse attributes writeable
2017-05-22 09:50:29 +00:00
cdef public list heads
cdef public list labels
cdef public dict orths
cdef public list ner
cdef public dict brackets
Example class for training data (#4543) * OrigAnnot class instead of gold.orig_annot list of zipped tuples * from_orig to replace from_annot_tuples * rename to RawAnnot * some unit tests for GoldParse creation and internal format * removing orig_annot and switching to lists instead of tuple * rewriting tuples to use RawAnnot (+ debug statements, WIP) * fix pop() changing the data * small fixes * pop-append fixes * return RawAnnot for existing GoldParse to have uniform interface * clean up imports * fix merge_sents * add unit test for 4402 with new structure (not working yet) * introduce DocAnnot * typo fixes * add unit test for merge_sents * rename from_orig to from_raw * fixing unit tests * fix nn parser * read_annots to produce text, doc_annot pairs * _make_golds fix * rename golds_to_gold_annots * small fixes * fix encoding * have golds_to_gold_annots use DocAnnot * missed a spot * merge_sents as function in DocAnnot * allow specifying only part of the token-level annotations * refactor with Example class + underlying dicts * pipeline components to work with Example objects (wip) * input checking * fix yielding * fix calls to update * small fixes * fix scorer unit test with new format * fix kwargs order * fixes for ud and conllu scripts * fix reading data for conllu script * add in proper errors (not fixed numbering yet to avoid merge conflicts) * fixing few more small bugs * fix EL script
2019-11-11 16:35:27 +00:00
cdef public dict cats
fixes in kb and gold
2019-07-17 15:18:26 +00:00
cdef public dict links
* Refactored transition system code now compiling. Still need to hook up label oracle, and test
2015-02-22 05:32:07 +00:00
* Remove cruft from conll.pyx --- unused stuff about evlauation, which now lives in spacy.scorer
2015-05-24 15:35:49 +00:00
cdef readonly list cand_to_gold
cdef readonly list gold_to_cand
Example class for training data (#4543) * OrigAnnot class instead of gold.orig_annot list of zipped tuples * from_orig to replace from_annot_tuples * rename to RawAnnot * some unit tests for GoldParse creation and internal format * removing orig_annot and switching to lists instead of tuple * rewriting tuples to use RawAnnot (+ debug statements, WIP) * fix pop() changing the data * small fixes * pop-append fixes * return RawAnnot for existing GoldParse to have uniform interface * clean up imports * fix merge_sents * add unit test for 4402 with new structure (not working yet) * introduce DocAnnot * typo fixes * add unit test for merge_sents * rename from_orig to from_raw * fixing unit tests * fix nn parser * read_annots to produce text, doc_annot pairs * _make_golds fix * rename golds_to_gold_annots * small fixes * fix encoding * have golds_to_gold_annots use DocAnnot * missed a spot * merge_sents as function in DocAnnot * allow specifying only part of the token-level annotations * refactor with Example class + underlying dicts * pipeline components to work with Example objects (wip) * input checking * fix yielding * fix calls to update * small fixes * fix scorer unit test with new format * fix kwargs order * fixes for ud and conllu scripts * fix reading data for conllu script * add in proper errors (not fixed numbering yet to avoid merge conflicts) * fixing few more small bugs * fix EL script
2019-11-11 16:35:27 +00:00
cdef class TokenAnnotation:
cdef public list ids
cdef public list words
cdef public list tags
Add support for pos/morphs/lemmas in training data (#4941) Add support for pos/morphs/lemmas throughout `GoldParse`, `Example`, and `docs_to_json()`.
2020-01-28 10:36:29 +00:00
cdef public list pos
cdef public list morphs
cdef public list lemmas
Example class for training data (#4543) * OrigAnnot class instead of gold.orig_annot list of zipped tuples * from_orig to replace from_annot_tuples * rename to RawAnnot * some unit tests for GoldParse creation and internal format * removing orig_annot and switching to lists instead of tuple * rewriting tuples to use RawAnnot (+ debug statements, WIP) * fix pop() changing the data * small fixes * pop-append fixes * return RawAnnot for existing GoldParse to have uniform interface * clean up imports * fix merge_sents * add unit test for 4402 with new structure (not working yet) * introduce DocAnnot * typo fixes * add unit test for merge_sents * rename from_orig to from_raw * fixing unit tests * fix nn parser * read_annots to produce text, doc_annot pairs * _make_golds fix * rename golds_to_gold_annots * small fixes * fix encoding * have golds_to_gold_annots use DocAnnot * missed a spot * merge_sents as function in DocAnnot * allow specifying only part of the token-level annotations * refactor with Example class + underlying dicts * pipeline components to work with Example objects (wip) * input checking * fix yielding * fix calls to update * small fixes * fix scorer unit test with new format * fix kwargs order * fixes for ud and conllu scripts * fix reading data for conllu script * add in proper errors (not fixed numbering yet to avoid merge conflicts) * fixing few more small bugs * fix EL script
2019-11-11 16:35:27 +00:00
cdef public list heads
cdef public list deps
cdef public list entities
Restructure Example with merged sents as default (#4632) * Switch to train_dataset() function in train CLI * Fixes for pipe() methods in pipeline components * Don't clobber `examples` variable with `as_example` in pipe() methods * Remove unnecessary traversals of `examples` * Update Parser.pipe() for Examples * Add `as_examples` kwarg to `pipe()` with implementation to return `Example`s * Accept `Doc` or `Example` in `pipe()` with `_get_doc()` (copied from `Pipe`) * Fixes to Example implementation in spacy.gold * Move `make_projective` from an attribute of Example to an argument of `Example.get_gold_parses()` * Head of 0 are not treated as unset * Unset heads are set to self rather than `None` (which causes problems while projectivizing) * Check for `Doc` (not just not `None`) when creating GoldParses for pre-merged example * Don't clobber `examples` variable in `iter_gold_docs()` * Add/modify gold tests for handling projectivity * In JSON roundtrip compare results from `dev_dataset` rather than `train_dataset` to avoid projectivization (and other potential modifications) * Add test for projective train vs. nonprojective dev versions of the same `Doc` * Handle ignore_misaligned as arg rather than attr Move `ignore_misaligned` from an attribute of `Example` to an argument to `Example.get_gold_parses()`, which makes it parallel to `make_projective`. Add test with old and new align that checks whether `ignore_misaligned` errors are raised as expected (only for new align). * Remove unused attrs from gold.pxd Remove `ignore_misaligned` and `make_projective` from `gold.pxd` * Restructure Example with merged sents as default An `Example` now includes a single `TokenAnnotation` that includes all the information from one `Doc` (=JSON `paragraph`). If required, the individual sentences can be returned as a list of examples with `Example.split_sents()` with no raw text available. * Input/output a single `Example.token_annotation` * Add `sent_starts` to `TokenAnnotation` to handle sentence boundaries * Replace `Example.merge_sents()` with `Example.split_sents()` * Modify components to use a single `Example.token_annotation` * Pipeline components * conllu2json converter * Rework/rename `add_token_annotation()` and `add_doc_annotation()` to `set_token_annotation()` and `set_doc_annotation()`, functions that set rather then appending/extending. * Rename `morphology` to `morphs` in `TokenAnnotation` and `GoldParse` * Add getters to `TokenAnnotation` to supply default values when a given attribute is not available * `Example.get_gold_parses()` in `spacy.gold._make_golds()` is only applied on single examples, so the `GoldParse` is returned saved in the provided `Example` rather than creating a new `Example` with no other internal annotation * Update tests for API changes and `merge_sents()` vs. `split_sents()` * Refer to Example.goldparse in iter_gold_docs() Use `Example.goldparse` in `iter_gold_docs()` instead of `Example.gold` because a `None` `GoldParse` is generated with ignore_misaligned and generating it on-the-fly can raise an unwanted AlignmentError * Fix make_orth_variants() Fix bug in make_orth_variants() related to conversion from multiple to one TokenAnnotation per Example. * Add basic test for make_orth_variants() * Replace try/except with conditionals * Replace default morph value with set
2019-11-25 15:03:28 +00:00
cdef public list sent_starts
Fix accidentally quadratic runtime in Example.split_sents (#5464) * Tidy up train-from-config a bit * Fix accidentally quadratic perf in TokenAnnotation.brackets When we're reading in the gold data, we had a nested loop where we looped over the brackets for each token, looking for brackets that start on that word. This is accidentally quadratic, because we have one bracket per word (for the POS tags). So we had an O(N**2) behaviour here that ended up being pretty slow. To solve this I'm indexing the brackets by their starting word on the TokenAnnotations object, and having a property to provide the previous view. * Fixes
2020-05-20 16:48:18 +00:00
cdef public dict brackets_by_start
Example class for training data (#4543) * OrigAnnot class instead of gold.orig_annot list of zipped tuples * from_orig to replace from_annot_tuples * rename to RawAnnot * some unit tests for GoldParse creation and internal format * removing orig_annot and switching to lists instead of tuple * rewriting tuples to use RawAnnot (+ debug statements, WIP) * fix pop() changing the data * small fixes * pop-append fixes * return RawAnnot for existing GoldParse to have uniform interface * clean up imports * fix merge_sents * add unit test for 4402 with new structure (not working yet) * introduce DocAnnot * typo fixes * add unit test for merge_sents * rename from_orig to from_raw * fixing unit tests * fix nn parser * read_annots to produce text, doc_annot pairs * _make_golds fix * rename golds_to_gold_annots * small fixes * fix encoding * have golds_to_gold_annots use DocAnnot * missed a spot * merge_sents as function in DocAnnot * allow specifying only part of the token-level annotations * refactor with Example class + underlying dicts * pipeline components to work with Example objects (wip) * input checking * fix yielding * fix calls to update * small fixes * fix scorer unit test with new format * fix kwargs order * fixes for ud and conllu scripts * fix reading data for conllu script * add in proper errors (not fixed numbering yet to avoid merge conflicts) * fixing few more small bugs * fix EL script
2019-11-11 16:35:27 +00:00
cdef class DocAnnotation:
cdef public object cats
cdef public object links
cdef class Example:
cdef public object doc
Restructure Example with merged sents as default (#4632) * Switch to train_dataset() function in train CLI * Fixes for pipe() methods in pipeline components * Don't clobber `examples` variable with `as_example` in pipe() methods * Remove unnecessary traversals of `examples` * Update Parser.pipe() for Examples * Add `as_examples` kwarg to `pipe()` with implementation to return `Example`s * Accept `Doc` or `Example` in `pipe()` with `_get_doc()` (copied from `Pipe`) * Fixes to Example implementation in spacy.gold * Move `make_projective` from an attribute of Example to an argument of `Example.get_gold_parses()` * Head of 0 are not treated as unset * Unset heads are set to self rather than `None` (which causes problems while projectivizing) * Check for `Doc` (not just not `None`) when creating GoldParses for pre-merged example * Don't clobber `examples` variable in `iter_gold_docs()` * Add/modify gold tests for handling projectivity * In JSON roundtrip compare results from `dev_dataset` rather than `train_dataset` to avoid projectivization (and other potential modifications) * Add test for projective train vs. nonprojective dev versions of the same `Doc` * Handle ignore_misaligned as arg rather than attr Move `ignore_misaligned` from an attribute of `Example` to an argument to `Example.get_gold_parses()`, which makes it parallel to `make_projective`. Add test with old and new align that checks whether `ignore_misaligned` errors are raised as expected (only for new align). * Remove unused attrs from gold.pxd Remove `ignore_misaligned` and `make_projective` from `gold.pxd` * Restructure Example with merged sents as default An `Example` now includes a single `TokenAnnotation` that includes all the information from one `Doc` (=JSON `paragraph`). If required, the individual sentences can be returned as a list of examples with `Example.split_sents()` with no raw text available. * Input/output a single `Example.token_annotation` * Add `sent_starts` to `TokenAnnotation` to handle sentence boundaries * Replace `Example.merge_sents()` with `Example.split_sents()` * Modify components to use a single `Example.token_annotation` * Pipeline components * conllu2json converter * Rework/rename `add_token_annotation()` and `add_doc_annotation()` to `set_token_annotation()` and `set_doc_annotation()`, functions that set rather then appending/extending. * Rename `morphology` to `morphs` in `TokenAnnotation` and `GoldParse` * Add getters to `TokenAnnotation` to supply default values when a given attribute is not available * `Example.get_gold_parses()` in `spacy.gold._make_golds()` is only applied on single examples, so the `GoldParse` is returned saved in the provided `Example` rather than creating a new `Example` with no other internal annotation * Update tests for API changes and `merge_sents()` vs. `split_sents()` * Refer to Example.goldparse in iter_gold_docs() Use `Example.goldparse` in `iter_gold_docs()` instead of `Example.gold` because a `None` `GoldParse` is generated with ignore_misaligned and generating it on-the-fly can raise an unwanted AlignmentError * Fix make_orth_variants() Fix bug in make_orth_variants() related to conversion from multiple to one TokenAnnotation per Example. * Add basic test for make_orth_variants() * Replace try/except with conditionals * Replace default morph value with set
2019-11-25 15:03:28 +00:00
cdef public TokenAnnotation token_annotation
Example class for training data (#4543) * OrigAnnot class instead of gold.orig_annot list of zipped tuples * from_orig to replace from_annot_tuples * rename to RawAnnot * some unit tests for GoldParse creation and internal format * removing orig_annot and switching to lists instead of tuple * rewriting tuples to use RawAnnot (+ debug statements, WIP) * fix pop() changing the data * small fixes * pop-append fixes * return RawAnnot for existing GoldParse to have uniform interface * clean up imports * fix merge_sents * add unit test for 4402 with new structure (not working yet) * introduce DocAnnot * typo fixes * add unit test for merge_sents * rename from_orig to from_raw * fixing unit tests * fix nn parser * read_annots to produce text, doc_annot pairs * _make_golds fix * rename golds_to_gold_annots * small fixes * fix encoding * have golds_to_gold_annots use DocAnnot * missed a spot * merge_sents as function in DocAnnot * allow specifying only part of the token-level annotations * refactor with Example class + underlying dicts * pipeline components to work with Example objects (wip) * input checking * fix yielding * fix calls to update * small fixes * fix scorer unit test with new format * fix kwargs order * fixes for ud and conllu scripts * fix reading data for conllu script * add in proper errors (not fixed numbering yet to avoid merge conflicts) * fixing few more small bugs * fix EL script
2019-11-11 16:35:27 +00:00
cdef public DocAnnotation doc_annotation
cdef public object goldparse