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spaCy/requirements.txt

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2018-12-03 01:41:05 +00:00
# Our libraries
💫 Use Blis for matrix multiplications (#2966) Our epic matrix multiplication odyssey is drawing to a close... I've now finally got the Blis linear algebra routines in a self-contained Python package, with wheels for Windows, Linux and OSX. The only missing platform at the moment is Windows Python 2.7. The result is at https://github.com/explosion/cython-blis Thinc v7.0.0 will make the change to Blis. I've put a Thinc v7.0.0.dev0 up on PyPi so that we can test these changes with the CI, and even get them out to spacy-nightly, before Thinc v7.0.0 is released. This PR also updates the other dependencies to be in line with the current versions master is using. I've also resolved the msgpack deprecation problems, and gotten spaCy and Thinc up to date with the latest Cython. The point of switching to Blis is to have control of how our matrix multiplications are executed across platforms. When we were using numpy for this, a different library would be used on pip and conda, OSX would use Accelerate, etc. This would open up different bugs and performance problems, especially when multi-threading was introduced. With the change to Blis, we now strictly single-thread the matrix multiplications. This will make it much easier to use multiprocessing to parallelise the runtime, since we won't have nested parallelism problems to deal with. * Use blis * Use -2 arg to Cython * Update dependencies * Fix requirements * Update setup dependencies * Fix requirement typo * Fix msgpack errors * Remove Python27 test from Appveyor, until Blis works there * Auto-format setup.py * Fix murmurhash version
2018-11-26 23:44:04 +00:00
cymem>=2.0.2,<2.1.0
Require preshed 3.0.2
2019-09-28 20:23:24 +00:00
preshed>=3.0.2,<3.1.0
Update Thinc pin
2020-07-11 15:02:54 +00:00
thinc>=8.0.0a17,<8.0.0a20
Update to blis 0.4 and thinc 7.1
2019-08-25 11:50:47 +00:00
blis>=0.4.0,<0.5.0
Update spaCy for thinc 8.0.0 (#4920) * Add load_from_config function * Add train_from_config script * Merge configs and expose via spacy.config * Fix script * Suggest create_evaluation_callback * Hard-code for NER * Fix errors * Register command * Add TODO * Update train-from-config todos * Fix imports * Allow delayed setting of parser model nr_class * Get train-from-config working * Tidy up and fix scores and printing * Hide traceback if cancelled * Fix weighted score formatting * Fix score formatting * Make output_path optional * Add Tok2Vec component * Tidy up and add tok2vec_tensors * Add option to copy docs in nlp.update * Copy docs in nlp.update * Adjust nlp.update() for set_annotations * Don't shuffle pipes in nlp.update, decruft * Support set_annotations arg in component update * Support set_annotations in parser update * Add get_gradients method * Add get_gradients to parser * Update errors.py * Fix problems caused by merge * Add _link_components method in nlp * Add concept of 'listeners' and ControlledModel * Support optional attributes arg in ControlledModel * Try having tok2vec component in pipeline * Fix tok2vec component * Fix config * Fix tok2vec * Update for Example * Update for Example * Update config * Add eg2doc util * Update and add schemas/types * Update schemas * Fix nlp.update * Fix tagger * Remove hacks from train-from-config * Remove hard-coded config str * Calculate loss in tok2vec component * Tidy up and use function signatures instead of models * Support union types for registry models * Minor cleaning in Language.update * Make ControlledModel specifically Tok2VecListener * Fix train_from_config * Fix tok2vec * Tidy up * Add function for bilstm tok2vec * Fix type * Fix syntax * Fix pytorch optimizer * Add example configs * Update for thinc describe changes * Update for Thinc changes * Update for dropout/sgd changes * Update for dropout/sgd changes * Unhack gradient update * Work on refactoring _ml * Remove _ml.py module * WIP upgrade cli scripts for thinc * Move some _ml stuff to util * Import link_vectors from util * Update train_from_config * Import from util * Import from util * Temporarily add ml.component_models module * Move ml methods * Move typedefs * Update load vectors * Update gitignore * Move imports * Add PrecomputableAffine * Fix imports * Fix imports * Fix imports * Fix missing imports * Update CLI scripts * Update spacy.language * Add stubs for building the models * Update model definition * Update create_default_optimizer * Fix import * Fix comment * Update imports in tests * Update imports in spacy.cli * Fix import * fix obsolete thinc imports * update srsly pin * from thinc to ml_datasets for example data such as imdb * update ml_datasets pin * using STATE.vectors * small fix * fix Sentencizer.pipe * black formatting * rename Affine to Linear as in thinc * set validate explicitely to True * rename with_square_sequences to with_list2padded * rename with_flatten to with_list2array * chaining layernorm * small fixes * revert Optimizer import * build_nel_encoder with new thinc style * fixes using model's get and set methods * Tok2Vec in component models, various fixes * fix up legacy tok2vec code * add model initialize calls * add in build_tagger_model * small fixes * setting model dims * fixes for ParserModel * various small fixes * initialize thinc Models * fixes * consistent naming of window_size * fixes, removing set_dropout * work around Iterable issue * remove legacy tok2vec * util fix * fix forward function of tok2vec listener * more fixes * trying to fix PrecomputableAffine (not succesful yet) * alloc instead of allocate * add morphologizer * rename residual * rename fixes * Fix predict function * Update parser and parser model * fixing few more tests * Fix precomputable affine * Update component model * Update parser model * Move backprop padding to own function, for test * Update test * Fix p. affine * Update NEL * build_bow_text_classifier and extract_ngrams * Fix parser init * Fix test add label * add build_simple_cnn_text_classifier * Fix parser init * Set gpu off by default in example * Fix tok2vec listener * Fix parser model * Small fixes * small fix for PyTorchLSTM parameters * revert my_compounding hack (iterable fixed now) * fix biLSTM * Fix uniqued * PyTorchRNNWrapper fix * small fixes * use helper function to calculate cosine loss * small fixes for build_simple_cnn_text_classifier * putting dropout default at 0.0 to ensure the layer gets built * using thinc util's set_dropout_rate * moving layer normalization inside of maxout definition to optimize dropout * temp debugging in NEL * fixed NEL model by using init defaults ! * fixing after set_dropout_rate refactor * proper fix * fix test_update_doc after refactoring optimizers in thinc * Add CharacterEmbed layer * Construct tagger Model * Add missing import * Remove unused stuff * Work on textcat * fix test (again :)) after optimizer refactor * fixes to allow reading Tagger from_disk without overwriting dimensions * don't build the tok2vec prematuraly * fix CharachterEmbed init * CharacterEmbed fixes * Fix CharacterEmbed architecture * fix imports * renames from latest thinc update * one more rename * add initialize calls where appropriate * fix parser initialization * Update Thinc version * Fix errors, auto-format and tidy up imports * Fix validation * fix if bias is cupy array * revert for now * ensure it's a numpy array before running bp in ParserStepModel * no reason to call require_gpu twice * use CupyOps.to_numpy instead of cupy directly * fix initialize of ParserModel * remove unnecessary import * fixes for CosineDistance * fix device renaming * use refactored loss functions (Thinc PR 251) * overfitting test for tagger * experimental settings for the tagger: avoid zero-init and subword normalization * clean up tagger overfitting test * use previous default value for nP * remove toy config * bringing layernorm back (had a bug - fixed in thinc) * revert setting nP explicitly * remove setting default in constructor * restore values as they used to be * add overfitting test for NER * add overfitting test for dep parser * add overfitting test for textcat * fixing init for linear (previously affine) * larger eps window for textcat * ensure doc is not None * Require newer thinc * Make float check vaguer * Slop the textcat overfit test more * Fix textcat test * Fix exclusive classes for textcat * fix after renaming of alloc methods * fixing renames and mandatory arguments (staticvectors WIP) * upgrade to thinc==8.0.0.dev3 * refer to vocab.vectors directly instead of its name * rename alpha to learn_rate * adding hashembed and staticvectors dropout * upgrade to thinc 8.0.0.dev4 * add name back to avoid warning W020 * thinc dev4 * update srsly * using thinc 8.0.0a0 ! Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com> Co-authored-by: Ines Montani <ines@ines.io>
2020-01-29 16:06:46 +00:00
ml_datasets>=0.1.1
💫 Use Blis for matrix multiplications (#2966) Our epic matrix multiplication odyssey is drawing to a close... I've now finally got the Blis linear algebra routines in a self-contained Python package, with wheels for Windows, Linux and OSX. The only missing platform at the moment is Windows Python 2.7. The result is at https://github.com/explosion/cython-blis Thinc v7.0.0 will make the change to Blis. I've put a Thinc v7.0.0.dev0 up on PyPi so that we can test these changes with the CI, and even get them out to spacy-nightly, before Thinc v7.0.0 is released. This PR also updates the other dependencies to be in line with the current versions master is using. I've also resolved the msgpack deprecation problems, and gotten spaCy and Thinc up to date with the latest Cython. The point of switching to Blis is to have control of how our matrix multiplications are executed across platforms. When we were using numpy for this, a different library would be used on pip and conda, OSX would use Accelerate, etc. This would open up different bugs and performance problems, especially when multi-threading was introduced. With the change to Blis, we now strictly single-thread the matrix multiplications. This will make it much easier to use multiprocessing to parallelise the runtime, since we won't have nested parallelism problems to deal with. * Use blis * Use -2 arg to Cython * Update dependencies * Fix requirements * Update setup dependencies * Fix requirement typo * Fix msgpack errors * Remove Python27 test from Appveyor, until Blis works there * Auto-format setup.py * Fix murmurhash version
2018-11-26 23:44:04 +00:00
murmurhash>=0.28.0,<1.1.0
Update wasabi pin
2020-06-21 20:25:34 +00:00
wasabi>=0.7.0,<1.1.0
Update srsly pin [ci skip]
2020-06-22 09:57:46 +00:00
srsly>=2.1.0,<3.0.0
Replace function registries with catalogue (#4584) * Replace functions registries with catalogue * Update __init__.py * Fix test * Revert unrelated flag [ci skip]
2019-11-07 10:45:22 +00:00
catalogue>=0.0.7,<1.1.0
➕ Add shellingham for automatic shell detection and update Typer pinning
2020-07-01 18:20:04 +00:00
typer>=0.3.0,<0.4.0
Sort requirements
2018-12-03 01:41:05 +00:00
# Third party dependencies
numpy>=1.15.0
requests>=2.13.0,<3.0.0
Restore tqdm imports (#4804) * set 4.38.0 to minimal version with color bug fix * set imports back to proper place * add upper range for tqdm
2019-12-16 12:12:19 +00:00
tqdm>=4.38.0,<5.0.0
Tidy up setup and update requirements tests
2020-02-25 14:46:39 +00:00
pydantic>=1.3.0,<2.0.0
Improve gold-standard alignment (#5711) * Remove previous alignment * Implement better alignment, using ragged data structure * Use pytokenizations for alignment * Fixes * Fixes * Fix overlapping entities in alignment * Fix align split_sents * Update test * Commit align.py * Try to appease setuptools * Fix flake8 * use realistic entities for testing * Update tests for better alignment * Improve alignment heuristic Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
2020-07-06 15:39:31 +00:00
pytokenizations
Tidy up requirements
2020-05-30 12:59:55 +00:00
# Official Python utilities
setuptools
packaging
importlib_metadata>=0.20; python_version < "3.8"
💫 Tidy up and auto-format .py files (#2983) <!--- Provide a general summary of your changes in the title. --> ## Description - [x] Use [`black`](https://github.com/ambv/black) to auto-format all `.py` files. - [x] Update flake8 config to exclude very large files (lemmatization tables etc.) - [x] Update code to be compatible with flake8 rules - [x] Fix various small bugs, inconsistencies and messy stuff in the language data - [x] Update docs to explain new code style (`black`, `flake8`, when to use `# fmt: off` and `# fmt: on` and what `# noqa` means) Once #2932 is merged, which auto-formats and tidies up the CLI, we'll be able to run `flake8 spacy` actually get meaningful results. At the moment, the code style and linting isn't applied automatically, but I'm hoping that the new [GitHub Actions](https://github.com/features/actions) will let us auto-format pull requests and post comments with relevant linting information. ### Types of change enhancement, code style ## Checklist <!--- Before you submit the PR, go over this checklist and make sure you can tick off all the boxes. [] -> [x] --> - [x] I have submitted the spaCy Contributor Agreement. - [x] I ran the tests, and all new and existing tests passed. - [x] My changes don't require a change to the documentation, or if they do, I've added all required information.
2018-11-30 16:03:03 +00:00
# Development dependencies
Change order of requirements [ci skip]
2018-12-01 03:28:51 +00:00
cython>=0.25
Refactor lemmatizer and data table integration (#4353) * Move test * Allow default in Lookups.get_table * Start with blank tables in Lookups.from_bytes * Refactor lemmatizer to hold instance of Lookups * Get lookups table within the lemmatization methods to make sure it references the correct table (even if the table was replaced or modified, e.g. when loading a model from disk) * Deprecate other arguments on Lemmatizer.__init__ and expect Lookups for consistency * Remove old and unsupported Lemmatizer.load classmethod * Refactor language-specific lemmatizers to inherit as much as possible from base class and override only what they need * Update tests and docs * Fix more tests * Fix lemmatizer * Upgrade pytest to try and fix weird CI errors * Try pytest 4.6.5
2019-10-01 19:36:04 +00:00
pytest>=4.6.5
💫 Refactor test suite (#2568) ## Description Related issues: #2379 (should be fixed by separating model tests) * **total execution time down from > 300 seconds to under 60 seconds** 🎉 * removed all model-specific tests that could only really be run manually anyway – those will now live in a separate test suite in the [`spacy-models`](https://github.com/explosion/spacy-models) repository and are already integrated into our new model training infrastructure * changed all relative imports to absolute imports to prepare for moving the test suite from `/spacy/tests` to `/tests` (it'll now always test against the installed version) * merged old regression tests into collections, e.g. `test_issue1001-1500.py` (about 90% of the regression tests are very short anyways) * tidied up and rewrote existing tests wherever possible ### Todo - [ ] move tests to `/tests` and adjust CI commands accordingly - [x] move model test suite from internal repo to `spacy-models` - [x] ~~investigate why `pipeline/test_textcat.py` is flakey~~ - [x] review old regression tests (leftover files) and see if they can be merged, simplified or deleted - [ ] update documentation on how to run tests ### Types of change enhancement, tests ## Checklist <!--- Before you submit the PR, go over this checklist and make sure you can tick off all the boxes. [] -> [x] --> - [x] I have submitted the spaCy Contributor Agreement. - [x] I ran the tests, and all new and existing tests passed. - [ ] My changes don't require a change to the documentation, or if they do, I've added all required information.
2018-07-24 21:38:44 +00:00
pytest-timeout>=1.3.0,<2.0.0
Add mock to requirements
2017-05-20 11:54:31 +00:00
mock>=2.0.0,<3.0.0
💫 Tidy up and auto-format .py files (#2983) <!--- Provide a general summary of your changes in the title. --> ## Description - [x] Use [`black`](https://github.com/ambv/black) to auto-format all `.py` files. - [x] Update flake8 config to exclude very large files (lemmatization tables etc.) - [x] Update code to be compatible with flake8 rules - [x] Fix various small bugs, inconsistencies and messy stuff in the language data - [x] Update docs to explain new code style (`black`, `flake8`, when to use `# fmt: off` and `# fmt: on` and what `# noqa` means) Once #2932 is merged, which auto-formats and tidies up the CLI, we'll be able to run `flake8 spacy` actually get meaningful results. At the moment, the code style and linting isn't applied automatically, but I'm hoping that the new [GitHub Actions](https://github.com/features/actions) will let us auto-format pull requests and post comments with relevant linting information. ### Types of change enhancement, code style ## Checklist <!--- Before you submit the PR, go over this checklist and make sure you can tick off all the boxes. [] -> [x] --> - [x] I have submitted the spaCy Contributor Agreement. - [x] I ran the tests, and all new and existing tests passed. - [x] My changes don't require a change to the documentation, or if they do, I've added all required information.
2018-11-30 16:03:03 +00:00
flake8>=3.5.0,<3.6.0