2020-06-29 14:54:47 +00:00
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from typing import List, Dict, Any, Optional, Sequence
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2020-06-21 11:44:00 +00:00
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import typer
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import srsly
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from pathlib import Path
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from wasabi import msg
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2020-06-21 22:30:05 +00:00
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import subprocess
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2020-06-21 22:15:06 +00:00
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import os
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import re
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2020-06-22 12:53:31 +00:00
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import shutil
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2020-06-25 10:26:53 +00:00
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import sys
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2020-06-28 14:25:53 +00:00
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import requests
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import tqdm
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2020-06-21 11:44:00 +00:00
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2020-06-27 11:02:10 +00:00
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from ._app import app, Arg, Opt, COMMAND, NAME
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from .. import about
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from ..schemas import ProjectConfigSchema, validate
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from ..util import ensure_path, run_command, make_tempdir, working_dir
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from ..util import get_hash, get_checksum
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2020-06-21 19:35:01 +00:00
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2020-06-21 11:44:00 +00:00
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CONFIG_FILE = "project.yml"
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DVC_CONFIG = "dvc.yaml"
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DVC_DIR = ".dvc"
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DIRS = [
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"assets",
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"metas",
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"configs",
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"packages",
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"metrics",
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"scripts",
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"notebooks",
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"training",
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"corpus",
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]
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2020-06-21 22:15:06 +00:00
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CACHES = [
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Path.home() / ".torch",
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Path.home() / ".caches" / "torch",
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os.environ.get("TORCH_HOME"),
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Path.home() / ".keras",
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]
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2020-06-27 11:02:10 +00:00
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DVC_CONFIG_COMMENT = """# This file is auto-generated by spaCy based on your project.yml. Do not edit
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# it directly and edit the project.yml instead and re-run the project."""
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2020-06-28 13:45:19 +00:00
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CLI_HELP = f"""Command-line interface for spaCy projects and working with project
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templates. You'd typically start by cloning a project template to a local
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directory and fetching its assets like datasets etc. See the project's
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{CONFIG_FILE} for the available commands. Under the hood, spaCy uses DVC (Data
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Version Control) to manage input and output files and to ensure steps are only
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re-run if their inputs change.
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"""
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2020-06-27 11:02:10 +00:00
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2020-06-29 18:11:34 +00:00
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project_cli = typer.Typer(help=CLI_HELP, no_args_is_help=True)
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@project_cli.callback(invoke_without_command=True)
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def callback(ctx: typer.Context):
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"""This runs before every project command and ensures DVC is installed."""
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ensure_dvc()
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################
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# CLI COMMANDS #
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################
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@project_cli.command("clone")
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def project_clone_cli(
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# fmt: off
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name: str = Arg(..., help="The name of the template to fetch"),
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dest: Path = Arg(Path.cwd(), help="Where to download and work. Defaults to current working directory.", exists=False),
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repo: str = Opt(about.__projects__, "--repo", "-r", help="The repository to look in."),
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git: bool = Opt(False, "--git", "-G", help="Initialize project as a Git repo"),
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no_init: bool = Opt(False, "--no-init", "-NI", help="Don't initialize the project with DVC"),
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# fmt: on
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):
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"""Clone a project template from a repository. Calls into "git" and will
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only download the files from the given subdirectory. The GitHub repo
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defaults to the official spaCy template repo, but can be customized
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(including using a private repo). Setting the --git flag will also
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initialize the project directory as a Git repo. If the project is intended
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to be a Git repo, it should be initialized with Git first, before
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initializing DVC (Data Version Control). This allows DVC to integrate with
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Git.
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"""
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if dest == Path.cwd():
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dest = dest / name
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project_clone(name, dest, repo=repo, git=git, no_init=no_init)
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@project_cli.command("init")
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def project_init_cli(
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path: Path = Arg(Path.cwd(), help="Path to cloned project. Defaults to current working directory.", exists=True, file_okay=False),
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git: bool = Opt(False, "--git", "-G", help="Initialize project as a Git repo"),
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force: bool = Opt(False, "--force", "-F", help="Force initiziation"),
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):
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"""Initialize a project directory with DVC and optionally Git. This should
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typically be taken care of automatically when you run the "project clone"
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command, but you can also run it separately. If the project is intended to
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be a Git repo, it should be initialized with Git first, before initializing
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DVC. This allows DVC to integrate with Git.
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"""
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project_init(path, git=git, force=force, silent=True)
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@project_cli.command("assets")
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def project_assets_cli(
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# fmt: off
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project_dir: Path = Arg(Path.cwd(), help="Path to cloned project. Defaults to current working directory.", exists=True, file_okay=False),
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# fmt: on
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):
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"""Use DVC (Data Version Control) to fetch project assets. Assets are
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defined in the "assets" section of the project config. If possible, DVC
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will try to track the files so you can pull changes from upstream. It will
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2020-06-29 14:32:25 +00:00
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also try and store the checksum so the assets are versioned. If the file
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2020-06-28 14:25:53 +00:00
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can't be tracked or checked, it will be downloaded without DVC. If a checksum
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is provided in the project config, the file is only downloaded if no local
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file with the same checksum exists.
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"""
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project_assets(project_dir)
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@project_cli.command(
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"run-all",
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context_settings={"allow_extra_args": True, "ignore_unknown_options": True},
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)
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def project_run_all_cli(
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# fmt: off
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ctx: typer.Context,
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project_dir: Path = Arg(Path.cwd(), help="Location of project directory. Defaults to current working directory.", exists=True, file_okay=False),
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show_help: bool = Opt(False, "--help", help="Show help message and available subcommands")
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# fmt: on
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):
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"""Run all commands defined in the project. This command will use DVC and
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the defined outputs and dependencies in the project config to determine
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which steps need to be re-run and where to start. This means you're only
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re-generating data if the inputs have changed.
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This command calls into "dvc repro" and all additional arguments are passed
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to the "dvc repro" command: https://dvc.org/doc/command-reference/repro
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"""
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if show_help:
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print_run_help(project_dir)
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else:
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project_run_all(project_dir, *ctx.args)
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@project_cli.command(
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"run", context_settings={"allow_extra_args": True, "ignore_unknown_options": True},
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)
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def project_run_cli(
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# fmt: off
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ctx: typer.Context,
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subcommand: str = Arg(None, help="Name of command defined in project config"),
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project_dir: Path = Arg(Path.cwd(), help="Location of project directory. Defaults to current working directory.", exists=True, file_okay=False),
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show_help: bool = Opt(False, "--help", help="Show help message and available subcommands")
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# fmt: on
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):
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"""Run a named script defined in the project config. If the command is
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part of the default pipeline defined in the "run" section, DVC is used to
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determine whether the step should re-run if its inputs have changed, or
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whether everything is up to date. If the script is not part of the default
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pipeline, it will be called separately without DVC.
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If DVC is used, the command calls into "dvc repro" and all additional
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arguments are passed to the "dvc repro" command:
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https://dvc.org/doc/command-reference/repro
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"""
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if show_help or not subcommand:
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print_run_help(project_dir, subcommand)
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else:
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project_run(project_dir, subcommand, *ctx.args)
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@project_cli.command("exec", hidden=True)
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def project_exec_cli(
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# fmt: off
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subcommand: str = Arg(..., help="Name of command defined in project config"),
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project_dir: Path = Arg(Path.cwd(), help="Location of project directory. Defaults to current working directory.", exists=True, file_okay=False),
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# fmt: on
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):
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"""Execute a command defined in the project config. This CLI command is
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only called internally in auto-generated DVC pipelines, as a shortcut for
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multi-step commands in the project config. You typically shouldn't have to
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call it yourself. To run a command, call "run" or "run-all".
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"""
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project_exec(project_dir, subcommand)
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@project_cli.command("update-dvc")
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def project_update_dvc_cli(
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# fmt: off
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project_dir: Path = Arg(Path.cwd(), help="Location of project directory. Defaults to current working directory.", exists=True, file_okay=False),
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verbose: bool = Opt(False, "--verbose", "-V", help="Print more info"),
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force: bool = Opt(False, "--force", "-F", help="Force update DVC config"),
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# fmt: on
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):
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"""Update the auto-generated DVC config file. Uses the steps defined in the
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"run" section of the project config. This typically happens automatically
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when running a command, but can also be triggered manually if needed.
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"""
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config = load_project_config(project_dir)
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updated = update_dvc_config(project_dir, config, verbose=verbose, force=force)
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if updated:
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msg.good(f"Updated DVC config from {CONFIG_FILE}")
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else:
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msg.info(f"No changes found in {CONFIG_FILE}, no update needed")
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2020-06-30 09:23:35 +00:00
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app.add_typer(project_cli, name="project")
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#################
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# CLI FUNCTIONS #
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#################
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2020-06-21 22:15:06 +00:00
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2020-06-22 12:53:31 +00:00
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def project_clone(
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name: str,
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dest: Path,
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*,
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repo: str = about.__projects__,
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git: bool = False,
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no_init: bool = False,
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) -> None:
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"""Clone a project template from a repository.
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name (str): Name of subdirectory to clone.
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dest (Path): Destination path of cloned project.
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repo (str): URL of Git repo containing project templates.
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git (bool): Initialize project as Git repo. Should be set to True if project
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is intended as a repo, since it will allow DVC to integrate with Git.
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no_init (bool): Don't initialize DVC and Git automatically. If True, the
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"init" command or "git init" and "dvc init" need to be run manually.
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"""
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dest = ensure_path(dest)
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check_clone(name, dest, repo)
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project_dir = dest.resolve()
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# We're using Git and sparse checkout to only clone the files we need
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with make_tempdir() as tmp_dir:
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cmd = f"git clone {repo} {tmp_dir} --no-checkout --depth 1 --config core.sparseCheckout=true"
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try:
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run_command(cmd)
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except SystemExit:
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err = f"Could not clone the repo '{repo}' into the temp dir '{tmp_dir}'"
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msg.fail(err)
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with (tmp_dir / ".git" / "info" / "sparse-checkout").open("w") as f:
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f.write(name)
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2020-06-29 16:16:39 +00:00
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run_command(["git", "-C", str(tmp_dir), "fetch"])
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run_command(["git", "-C", str(tmp_dir), "checkout"])
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shutil.move(str(tmp_dir / Path(name).name), str(project_dir))
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msg.good(f"Cloned project '{name}' from {repo} into {project_dir}")
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for sub_dir in DIRS:
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dir_path = project_dir / sub_dir
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if not dir_path.exists():
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dir_path.mkdir(parents=True)
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if not no_init:
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project_init(project_dir, git=git, force=True, silent=True)
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msg.good(f"Your project is now ready!", dest)
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2020-06-28 13:08:35 +00:00
|
|
|
|
print(f"To fetch the assets, run:\n{COMMAND} project assets {dest}")
|
2020-06-27 12:15:41 +00:00
|
|
|
|
|
|
|
|
|
|
2020-06-27 12:40:28 +00:00
|
|
|
|
def project_init(
|
2020-06-28 13:08:35 +00:00
|
|
|
|
project_dir: Path,
|
|
|
|
|
*,
|
|
|
|
|
git: bool = False,
|
2020-06-29 18:07:21 +00:00
|
|
|
|
force: bool = False,
|
2020-06-28 13:08:35 +00:00
|
|
|
|
silent: bool = False,
|
|
|
|
|
analytics: bool = False,
|
2020-06-27 12:40:28 +00:00
|
|
|
|
):
|
2020-06-28 13:08:35 +00:00
|
|
|
|
"""Initialize a project as a DVC and (optionally) as a Git repo.
|
|
|
|
|
|
|
|
|
|
project_dir (Path): Path to project directory.
|
|
|
|
|
git (bool): Also call "git init" to initialize directory as a Git repo.
|
|
|
|
|
silent (bool): Don't print any output (via DVC).
|
|
|
|
|
analytics (bool): Opt-in to DVC analytics (defaults to False).
|
|
|
|
|
"""
|
2020-06-30 11:29:45 +00:00
|
|
|
|
with working_dir(project_dir) as cwd:
|
2020-06-29 18:07:21 +00:00
|
|
|
|
if git:
|
|
|
|
|
run_command(["git", "init"])
|
2020-06-27 11:02:10 +00:00
|
|
|
|
init_cmd = ["dvc", "init"]
|
2020-06-27 12:40:28 +00:00
|
|
|
|
if silent:
|
|
|
|
|
init_cmd.append("--quiet")
|
2020-06-27 11:02:10 +00:00
|
|
|
|
if not git:
|
|
|
|
|
init_cmd.append("--no-scm")
|
2020-06-29 18:07:21 +00:00
|
|
|
|
if force:
|
|
|
|
|
init_cmd.append("--force")
|
2020-06-27 11:02:10 +00:00
|
|
|
|
run_command(init_cmd)
|
2020-06-28 13:08:35 +00:00
|
|
|
|
# We don't want to have analytics on by default – our users should
|
|
|
|
|
# opt-in explicitly. If they want it, they can always enable it.
|
2020-06-27 12:40:28 +00:00
|
|
|
|
if not analytics:
|
|
|
|
|
run_command(["dvc", "config", "core.analytics", "false"])
|
2020-06-29 18:07:21 +00:00
|
|
|
|
# Remove unused and confusing plot templates from .dvc directory
|
|
|
|
|
# TODO: maybe we shouldn't do this, but it's otherwise super confusing
|
|
|
|
|
# once you commit your changes via Git and it creates a bunch of files
|
|
|
|
|
# that have no purpose
|
2020-06-30 11:17:26 +00:00
|
|
|
|
plots_dir = cwd / DVC_DIR / "plots"
|
2020-06-29 18:07:21 +00:00
|
|
|
|
if plots_dir.exists():
|
|
|
|
|
shutil.rmtree(str(plots_dir))
|
2020-06-30 11:17:26 +00:00
|
|
|
|
config = load_project_config(cwd)
|
|
|
|
|
setup_check_dvc(cwd, config)
|
2020-06-21 22:15:06 +00:00
|
|
|
|
|
|
|
|
|
|
2020-06-28 13:08:35 +00:00
|
|
|
|
def project_assets(project_dir: Path) -> None:
|
|
|
|
|
"""Fetch assets for a project using DVC if possible.
|
2020-06-21 22:15:06 +00:00
|
|
|
|
|
2020-06-28 13:08:35 +00:00
|
|
|
|
project_dir (Path): Path to project directory.
|
|
|
|
|
"""
|
|
|
|
|
project_path = ensure_path(project_dir)
|
2020-06-21 22:15:06 +00:00
|
|
|
|
config = load_project_config(project_path)
|
2020-06-28 10:24:59 +00:00
|
|
|
|
setup_check_dvc(project_path, config)
|
2020-06-21 22:15:06 +00:00
|
|
|
|
assets = config.get("assets", {})
|
|
|
|
|
if not assets:
|
|
|
|
|
msg.warn(f"No assets specified in {CONFIG_FILE}", exits=0)
|
2020-06-27 11:02:10 +00:00
|
|
|
|
msg.info(f"Fetching {len(assets)} asset(s)")
|
2020-06-21 22:15:06 +00:00
|
|
|
|
variables = config.get("variables", {})
|
2020-06-29 14:55:24 +00:00
|
|
|
|
fetched_assets = []
|
2020-06-21 22:15:06 +00:00
|
|
|
|
for asset in assets:
|
|
|
|
|
url = asset["url"].format(**variables)
|
|
|
|
|
dest = asset["dest"].format(**variables)
|
2020-06-29 14:55:24 +00:00
|
|
|
|
fetched_path = fetch_asset(project_path, url, dest, asset.get("checksum"))
|
|
|
|
|
if fetched_path:
|
|
|
|
|
fetched_assets.append(str(fetched_path))
|
|
|
|
|
if fetched_assets:
|
|
|
|
|
with working_dir(project_path):
|
|
|
|
|
run_command(["dvc", "add", *fetched_assets, "--external"])
|
2020-06-27 12:15:41 +00:00
|
|
|
|
|
|
|
|
|
|
2020-06-27 19:13:06 +00:00
|
|
|
|
def fetch_asset(
|
|
|
|
|
project_path: Path, url: str, dest: Path, checksum: Optional[str] = None
|
2020-06-29 14:55:24 +00:00
|
|
|
|
) -> Optional[Path]:
|
2020-06-28 13:08:35 +00:00
|
|
|
|
"""Fetch an asset from a given URL or path. Will try to import the file
|
|
|
|
|
using DVC's import-url if possible (fully tracked and versioned) and falls
|
|
|
|
|
back to get-url (versioned) and a non-DVC download if necessary. If a
|
|
|
|
|
checksum is provided and a local file exists, it's only re-downloaded if the
|
|
|
|
|
checksum doesn't match.
|
|
|
|
|
|
|
|
|
|
project_path (Path): Path to project directory.
|
|
|
|
|
url (str): URL or path to asset.
|
|
|
|
|
checksum (Optional[str]): Optional expected checksum of local file.
|
2020-06-29 14:55:24 +00:00
|
|
|
|
RETURNS (Optional[Path]): The path to the fetched asset or None if fetching
|
|
|
|
|
the asset failed.
|
2020-06-28 13:08:35 +00:00
|
|
|
|
"""
|
|
|
|
|
url = convert_asset_url(url)
|
2020-06-28 10:40:11 +00:00
|
|
|
|
dest_path = (project_path / dest).resolve()
|
2020-06-27 12:15:41 +00:00
|
|
|
|
if dest_path.exists() and checksum:
|
|
|
|
|
# If there's already a file, check for checksum
|
2020-06-28 11:07:31 +00:00
|
|
|
|
# TODO: add support for caches (dvc import-url with local path)
|
2020-06-27 12:15:41 +00:00
|
|
|
|
if checksum == get_checksum(dest_path):
|
|
|
|
|
msg.good(f"Skipping download with matching checksum: {dest}")
|
2020-06-29 14:55:24 +00:00
|
|
|
|
return dest_path
|
2020-06-27 12:15:41 +00:00
|
|
|
|
with working_dir(project_path):
|
|
|
|
|
try:
|
2020-06-28 11:07:31 +00:00
|
|
|
|
# If these fail, we don't want to output an error or info message.
|
|
|
|
|
# Try with tracking the source first, then just downloading with
|
|
|
|
|
# DVC, then a regular non-DVC download.
|
2020-06-28 13:08:35 +00:00
|
|
|
|
try:
|
|
|
|
|
dvc_cmd = ["dvc", "import-url", url, str(dest_path)]
|
|
|
|
|
print(subprocess.check_output(dvc_cmd, stderr=subprocess.DEVNULL))
|
|
|
|
|
except subprocess.CalledProcessError:
|
|
|
|
|
dvc_cmd = ["dvc", "get-url", url, str(dest_path)]
|
|
|
|
|
print(subprocess.check_output(dvc_cmd, stderr=subprocess.DEVNULL))
|
2020-06-27 12:15:41 +00:00
|
|
|
|
except subprocess.CalledProcessError:
|
2020-06-28 14:25:53 +00:00
|
|
|
|
try:
|
|
|
|
|
download_file(url, dest_path)
|
|
|
|
|
except requests.exceptions.HTTPError as e:
|
|
|
|
|
msg.fail(f"Download failed: {dest}", e)
|
2020-06-29 14:55:24 +00:00
|
|
|
|
return None
|
2020-06-28 11:07:31 +00:00
|
|
|
|
if checksum and checksum != get_checksum(dest_path):
|
|
|
|
|
msg.warn(f"Checksum doesn't match value defined in {CONFIG_FILE}: {dest}")
|
2020-06-27 12:15:41 +00:00
|
|
|
|
msg.good(f"Fetched asset {dest}")
|
2020-06-29 14:55:24 +00:00
|
|
|
|
return dest_path
|
2020-06-27 11:02:10 +00:00
|
|
|
|
|
|
|
|
|
|
|
|
|
|
def project_run_all(project_dir: Path, *dvc_args) -> None:
|
2020-06-28 13:08:35 +00:00
|
|
|
|
"""Run all commands defined in the project using DVC.
|
|
|
|
|
|
|
|
|
|
project_dir (Path): Path to project directory.
|
|
|
|
|
*dvc_args: Other arguments passed to "dvc repro".
|
|
|
|
|
"""
|
2020-06-27 11:02:10 +00:00
|
|
|
|
config = load_project_config(project_dir)
|
2020-06-28 10:24:59 +00:00
|
|
|
|
setup_check_dvc(project_dir, config)
|
2020-06-27 11:02:10 +00:00
|
|
|
|
dvc_cmd = ["dvc", "repro", *dvc_args]
|
2020-06-27 12:15:41 +00:00
|
|
|
|
with working_dir(project_dir):
|
|
|
|
|
run_command(dvc_cmd)
|
2020-06-27 11:02:10 +00:00
|
|
|
|
|
|
|
|
|
|
|
|
|
|
def print_run_help(project_dir: Path, subcommand: Optional[str] = None) -> None:
|
2020-06-28 13:08:35 +00:00
|
|
|
|
"""Simulate a CLI help prompt using the info available in the project config.
|
|
|
|
|
|
|
|
|
|
project_dir (Path): The project directory.
|
|
|
|
|
subcommand (Optional[str]): The subcommand or None. If a subcommand is
|
|
|
|
|
provided, the subcommand help is shown. Otherwise, the top-level help
|
|
|
|
|
and a list of available commands is printed.
|
|
|
|
|
"""
|
2020-06-22 12:53:31 +00:00
|
|
|
|
config = load_project_config(project_dir)
|
2020-06-28 13:08:35 +00:00
|
|
|
|
setup_check_dvc(project_dir, config)
|
2020-06-22 12:53:31 +00:00
|
|
|
|
config_commands = config.get("commands", [])
|
|
|
|
|
commands = {cmd["name"]: cmd for cmd in config_commands}
|
|
|
|
|
if subcommand:
|
2020-06-29 14:54:47 +00:00
|
|
|
|
validate_subcommand(commands.keys(), subcommand)
|
2020-06-22 12:53:31 +00:00
|
|
|
|
print(f"Usage: {COMMAND} project run {project_dir} {subcommand}")
|
|
|
|
|
help_text = commands[subcommand].get("help")
|
|
|
|
|
if help_text:
|
|
|
|
|
msg.text(f"\n{help_text}\n")
|
|
|
|
|
else:
|
|
|
|
|
print(f"\nAvailable commands in {CONFIG_FILE}")
|
|
|
|
|
print(f"Usage: {COMMAND} project run {project_dir} [COMMAND]")
|
|
|
|
|
msg.table([(cmd["name"], cmd.get("help", "")) for cmd in config_commands])
|
2020-06-28 13:08:35 +00:00
|
|
|
|
msg.text("Run all commands defined in the 'run' block of the project config:")
|
|
|
|
|
print(f"{COMMAND} project run-all {project_dir}")
|
2020-06-21 19:35:01 +00:00
|
|
|
|
|
|
|
|
|
|
2020-06-27 11:02:10 +00:00
|
|
|
|
def project_run(project_dir: Path, subcommand: str, *dvc_args) -> None:
|
2020-06-28 13:08:35 +00:00
|
|
|
|
"""Run a named script defined in the project config. If the script is part
|
|
|
|
|
of the default pipeline (defined in the "run" section), DVC is used to
|
|
|
|
|
execute the command, so it can determine whether to rerun it. It then
|
|
|
|
|
calls into "exec" to execute it.
|
|
|
|
|
|
|
|
|
|
project_dir (Path): Path to project directory.
|
|
|
|
|
subcommand (str): Name of command to run.
|
|
|
|
|
*dvc_args: Other arguments passed to "dvc repro".
|
|
|
|
|
"""
|
2020-06-21 11:44:00 +00:00
|
|
|
|
config = load_project_config(project_dir)
|
2020-06-28 10:24:59 +00:00
|
|
|
|
setup_check_dvc(project_dir, config)
|
2020-06-21 11:44:00 +00:00
|
|
|
|
config_commands = config.get("commands", [])
|
|
|
|
|
variables = config.get("variables", {})
|
|
|
|
|
commands = {cmd["name"]: cmd for cmd in config_commands}
|
2020-06-29 14:54:47 +00:00
|
|
|
|
validate_subcommand(commands.keys(), subcommand)
|
2020-06-27 11:02:10 +00:00
|
|
|
|
if subcommand in config.get("run", []):
|
|
|
|
|
# This is one of the pipeline commands tracked in DVC
|
|
|
|
|
dvc_cmd = ["dvc", "repro", subcommand, *dvc_args]
|
2020-06-28 13:33:53 +00:00
|
|
|
|
with working_dir(project_dir):
|
|
|
|
|
run_command(dvc_cmd)
|
2020-06-27 11:02:10 +00:00
|
|
|
|
else:
|
2020-06-27 18:57:26 +00:00
|
|
|
|
cmd = commands[subcommand]
|
|
|
|
|
# Deps in non-DVC commands aren't tracked, but if they're defined,
|
|
|
|
|
# make sure they exist before running the command
|
|
|
|
|
for dep in cmd.get("deps", []):
|
|
|
|
|
if not (project_dir / dep).exists():
|
|
|
|
|
err = f"Missing dependency specified by command '{subcommand}': {dep}"
|
|
|
|
|
msg.fail(err, exits=1)
|
2020-06-27 11:02:10 +00:00
|
|
|
|
with working_dir(project_dir):
|
2020-06-27 18:57:26 +00:00
|
|
|
|
run_commands(cmd["script"], variables)
|
2020-06-21 11:44:00 +00:00
|
|
|
|
|
|
|
|
|
|
2020-06-27 11:02:10 +00:00
|
|
|
|
def project_exec(project_dir: Path, subcommand: str):
|
2020-06-28 13:08:35 +00:00
|
|
|
|
"""Execute a command defined in the project config.
|
|
|
|
|
|
|
|
|
|
project_dir (Path): Path to project directory.
|
|
|
|
|
subcommand (str): Name of command to run.
|
|
|
|
|
"""
|
2020-06-27 11:02:10 +00:00
|
|
|
|
config = load_project_config(project_dir)
|
|
|
|
|
config_commands = config.get("commands", [])
|
|
|
|
|
variables = config.get("variables", {})
|
|
|
|
|
commands = {cmd["name"]: cmd for cmd in config_commands}
|
|
|
|
|
with working_dir(project_dir):
|
|
|
|
|
run_commands(commands[subcommand]["script"], variables)
|
|
|
|
|
|
|
|
|
|
|
2020-06-28 13:08:35 +00:00
|
|
|
|
###########
|
|
|
|
|
# HELPERS #
|
|
|
|
|
###########
|
2020-06-21 19:35:01 +00:00
|
|
|
|
|
|
|
|
|
|
|
|
|
|
def load_project_config(path: Path) -> Dict[str, Any]:
|
2020-06-28 13:08:35 +00:00
|
|
|
|
"""Load the project config file from a directory and validate it.
|
|
|
|
|
|
|
|
|
|
path (Path): The path to the project directory.
|
|
|
|
|
RETURNS (Dict[str, Any]): The loaded project config.
|
|
|
|
|
"""
|
2020-06-21 19:35:01 +00:00
|
|
|
|
config_path = path / CONFIG_FILE
|
|
|
|
|
if not config_path.exists():
|
|
|
|
|
msg.fail("Can't find project config", config_path, exits=1)
|
2020-06-29 14:54:47 +00:00
|
|
|
|
invalid_err = f"Invalid project config in {CONFIG_FILE}"
|
|
|
|
|
try:
|
|
|
|
|
config = srsly.read_yaml(config_path)
|
|
|
|
|
except ValueError as e:
|
|
|
|
|
msg.fail(invalid_err, e, exits=1)
|
2020-06-21 19:35:01 +00:00
|
|
|
|
errors = validate(ProjectConfigSchema, config)
|
|
|
|
|
if errors:
|
2020-06-29 14:54:47 +00:00
|
|
|
|
msg.fail(invalid_err, "\n".join(errors), exits=1)
|
2020-06-21 19:35:01 +00:00
|
|
|
|
return config
|
|
|
|
|
|
|
|
|
|
|
2020-06-27 11:02:10 +00:00
|
|
|
|
def update_dvc_config(
|
|
|
|
|
path: Path,
|
|
|
|
|
config: Dict[str, Any],
|
|
|
|
|
verbose: bool = False,
|
|
|
|
|
silent: bool = False,
|
|
|
|
|
force: bool = False,
|
|
|
|
|
) -> bool:
|
2020-06-28 13:08:35 +00:00
|
|
|
|
"""Re-run the DVC commands in dry mode and update dvc.yaml file in the
|
|
|
|
|
project directory. The file is auto-generated based on the config. The
|
|
|
|
|
first line of the auto-generated file specifies the hash of the config
|
|
|
|
|
dict, so if any of the config values change, the DVC config is regenerated.
|
|
|
|
|
|
|
|
|
|
path (Path): The path to the project directory.
|
|
|
|
|
config (Dict[str, Any]): The loaded project config.
|
|
|
|
|
verbose (bool): Whether to print additional info (via DVC).
|
|
|
|
|
silent (bool): Don't output anything (via DVC).
|
|
|
|
|
force (bool): Force update, even if hashes match.
|
|
|
|
|
RETURNS (bool): Whether the DVC config file was updated.
|
2020-06-27 11:02:10 +00:00
|
|
|
|
"""
|
|
|
|
|
config_hash = get_hash(config)
|
2020-06-28 11:17:19 +00:00
|
|
|
|
path = path.resolve()
|
2020-06-27 11:02:10 +00:00
|
|
|
|
dvc_config_path = path / DVC_CONFIG
|
|
|
|
|
if dvc_config_path.exists():
|
2020-06-29 16:37:42 +00:00
|
|
|
|
# Check if the file was generated using the current config, if not, redo
|
2020-06-27 11:02:10 +00:00
|
|
|
|
with dvc_config_path.open("r", encoding="utf8") as f:
|
|
|
|
|
ref_hash = f.readline().strip().replace("# ", "")
|
|
|
|
|
if ref_hash == config_hash and not force:
|
|
|
|
|
return False # Nothing has changed in project config, don't need to update
|
|
|
|
|
dvc_config_path.unlink()
|
|
|
|
|
variables = config.get("variables", {})
|
|
|
|
|
commands = []
|
|
|
|
|
# We only want to include commands that are part of the main list of "run"
|
|
|
|
|
# commands in project.yml and should be run in sequence
|
|
|
|
|
config_commands = {cmd["name"]: cmd for cmd in config.get("commands", [])}
|
|
|
|
|
for name in config.get("run", []):
|
2020-06-29 14:54:47 +00:00
|
|
|
|
validate_subcommand(config_commands.keys(), name)
|
2020-06-27 11:02:10 +00:00
|
|
|
|
command = config_commands[name]
|
|
|
|
|
deps = command.get("deps", [])
|
|
|
|
|
outputs = command.get("outputs", [])
|
|
|
|
|
outputs_no_cache = command.get("outputs_no_cache", [])
|
|
|
|
|
if not deps and not outputs and not outputs_no_cache:
|
|
|
|
|
continue
|
|
|
|
|
# Default to "." as the project path since dvc.yaml is auto-generated
|
|
|
|
|
# and we don't want arbitrary paths in there
|
|
|
|
|
project_cmd = ["python", "-m", NAME, "project", "exec", ".", name]
|
|
|
|
|
deps_cmd = [c for cl in [["-d", p] for p in deps] for c in cl]
|
|
|
|
|
outputs_cmd = [c for cl in [["-o", p] for p in outputs] for c in cl]
|
|
|
|
|
outputs_nc_cmd = [c for cl in [["-O", p] for p in outputs_no_cache] for c in cl]
|
|
|
|
|
dvc_cmd = ["dvc", "run", "-n", name, "-w", str(path), "--no-exec"]
|
|
|
|
|
if verbose:
|
|
|
|
|
dvc_cmd.append("--verbose")
|
|
|
|
|
if silent:
|
|
|
|
|
dvc_cmd.append("--quiet")
|
|
|
|
|
full_cmd = [*dvc_cmd, *deps_cmd, *outputs_cmd, *outputs_nc_cmd, *project_cmd]
|
|
|
|
|
commands.append(" ".join(full_cmd))
|
2020-06-27 12:15:41 +00:00
|
|
|
|
with working_dir(path):
|
|
|
|
|
run_commands(commands, variables, silent=True)
|
2020-06-27 11:02:10 +00:00
|
|
|
|
with dvc_config_path.open("r+", encoding="utf8") as f:
|
|
|
|
|
content = f.read()
|
|
|
|
|
f.seek(0, 0)
|
|
|
|
|
f.write(f"# {config_hash}\n{DVC_CONFIG_COMMENT}\n{content}")
|
|
|
|
|
return True
|
|
|
|
|
|
|
|
|
|
|
2020-06-28 13:08:35 +00:00
|
|
|
|
def ensure_dvc() -> None:
|
|
|
|
|
"""Ensure that the "dvc" command is available and show an error if not."""
|
|
|
|
|
try:
|
|
|
|
|
subprocess.run(["dvc", "--version"], stdout=subprocess.DEVNULL)
|
|
|
|
|
except Exception:
|
|
|
|
|
msg.fail(
|
|
|
|
|
"spaCy projects require DVC (Data Version Control) and the 'dvc' command",
|
|
|
|
|
"You can install the Python package from pip (pip install dvc) or "
|
|
|
|
|
"conda (conda install -c conda-forge dvc). For more details, see the "
|
|
|
|
|
"documentation: https://dvc.org/doc/install",
|
|
|
|
|
exits=1,
|
|
|
|
|
)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
def setup_check_dvc(project_dir: Path, config: Dict[str, Any]) -> None:
|
|
|
|
|
"""Check that the project is set up correctly with DVC and update its
|
|
|
|
|
config if needed. Will raise an error if the project is not an initialized
|
|
|
|
|
DVC project.
|
|
|
|
|
|
|
|
|
|
project_dir (Path): The path to the project directory.
|
|
|
|
|
config (Dict[str, Any]): The loaded project config.
|
|
|
|
|
"""
|
|
|
|
|
if not project_dir.exists():
|
|
|
|
|
msg.fail(f"Can't find project directory: {project_dir}")
|
|
|
|
|
if not (project_dir / ".dvc").exists():
|
|
|
|
|
msg.fail(
|
|
|
|
|
"Project not initialized as a DVC project.",
|
|
|
|
|
f"Make sure that the project template was cloned correctly. To "
|
|
|
|
|
f"initialize the project directory manually, you can run: "
|
|
|
|
|
f"{COMMAND} project init {project_dir}",
|
|
|
|
|
exits=1,
|
|
|
|
|
)
|
2020-06-28 10:24:59 +00:00
|
|
|
|
with msg.loading("Updating DVC config..."):
|
2020-06-28 13:08:35 +00:00
|
|
|
|
updated = update_dvc_config(project_dir, config, silent=True)
|
2020-06-28 10:24:59 +00:00
|
|
|
|
if updated:
|
|
|
|
|
msg.good(f"Updated DVC config from changed {CONFIG_FILE}")
|
|
|
|
|
|
|
|
|
|
|
2020-06-27 11:02:10 +00:00
|
|
|
|
def run_commands(
|
|
|
|
|
commands: List[str] = tuple(), variables: Dict[str, str] = {}, silent: bool = False
|
|
|
|
|
) -> None:
|
2020-06-28 13:08:35 +00:00
|
|
|
|
"""Run a sequence of commands in a subprocess, in order.
|
|
|
|
|
|
|
|
|
|
commands (List[str]): The split commands.
|
|
|
|
|
variables (Dict[str, str]): Dictionary of variable names, mapped to their
|
|
|
|
|
values. Will be used to substitute format string variables in the
|
|
|
|
|
commands.
|
2020-06-29 14:32:25 +00:00
|
|
|
|
silent (bool): Don't print the commands.
|
2020-06-28 13:08:35 +00:00
|
|
|
|
"""
|
2020-06-21 19:35:01 +00:00
|
|
|
|
for command in commands:
|
|
|
|
|
# Substitute variables, e.g. "./{NAME}.json"
|
|
|
|
|
command = command.format(**variables)
|
2020-06-30 11:17:26 +00:00
|
|
|
|
# Not sure if this is needed or a good idea. Motivation: users may often
|
|
|
|
|
# use commands in their config that reference "python" and we want to
|
|
|
|
|
# make sure that it's always executing the same Python that spaCy is
|
|
|
|
|
# executed with and the pip in the same env, not some other Python/pip.
|
|
|
|
|
# Also ensures cross-compatibility if user 1 writes "python3" (because
|
|
|
|
|
# that's how it's set up on their system), and user 2 without the
|
|
|
|
|
# shortcut tries to re-run the command.
|
2020-06-29 18:30:42 +00:00
|
|
|
|
if len(command) and command[0] in ("python", "python3"):
|
2020-06-25 10:26:53 +00:00
|
|
|
|
command[0] = sys.executable
|
2020-06-29 18:30:42 +00:00
|
|
|
|
elif len(command) and command[0] in ("pip", "pip3"):
|
2020-06-28 10:24:59 +00:00
|
|
|
|
command = [sys.executable, "-m", "pip", *command[1:]]
|
2020-06-27 11:02:10 +00:00
|
|
|
|
if not silent:
|
2020-06-30 12:54:45 +00:00
|
|
|
|
print(f"Running command: {command}")
|
2020-06-25 10:26:53 +00:00
|
|
|
|
run_command(command)
|
2020-06-21 22:15:06 +00:00
|
|
|
|
|
|
|
|
|
|
2020-06-28 13:08:35 +00:00
|
|
|
|
def convert_asset_url(url: str) -> str:
|
|
|
|
|
"""Check and convert the asset URL if needed.
|
|
|
|
|
|
|
|
|
|
url (str): The asset URL.
|
|
|
|
|
RETURNS (str): The converted URL.
|
|
|
|
|
"""
|
2020-06-21 22:15:06 +00:00
|
|
|
|
# If the asset URL is a regular GitHub URL it's likely a mistake
|
|
|
|
|
if re.match("(http(s?)):\/\/github.com", url):
|
2020-06-28 13:08:35 +00:00
|
|
|
|
converted = url.replace("github.com", "raw.githubusercontent.com")
|
|
|
|
|
converted = re.sub(r"/(tree|blob)/", "/", converted)
|
2020-06-21 22:15:06 +00:00
|
|
|
|
msg.warn(
|
|
|
|
|
"Downloading from a regular GitHub URL. This will only download "
|
2020-06-28 13:08:35 +00:00
|
|
|
|
"the source of the page, not the actual file. Converting the URL "
|
|
|
|
|
"to a raw URL.",
|
|
|
|
|
converted,
|
2020-06-21 22:15:06 +00:00
|
|
|
|
)
|
2020-06-28 13:08:35 +00:00
|
|
|
|
return converted
|
|
|
|
|
return url
|
|
|
|
|
|
2020-06-22 12:53:31 +00:00
|
|
|
|
|
2020-06-28 13:08:35 +00:00
|
|
|
|
def check_clone(name: str, dest: Path, repo: str) -> None:
|
|
|
|
|
"""Check and validate that the destination path can be used to clone. Will
|
|
|
|
|
check that Git is available and that the destination path is suitable.
|
2020-06-22 12:53:31 +00:00
|
|
|
|
|
2020-06-28 13:08:35 +00:00
|
|
|
|
name (str): Name of the directory to clone from the repo.
|
|
|
|
|
dest (Path): Local destination of cloned directory.
|
|
|
|
|
repo (str): URL of the repo to clone from.
|
|
|
|
|
"""
|
|
|
|
|
try:
|
|
|
|
|
subprocess.run(["git", "--version"], stdout=subprocess.DEVNULL)
|
|
|
|
|
except Exception:
|
|
|
|
|
msg.fail(
|
|
|
|
|
f"Cloning spaCy project templates requires Git and the 'git' command. ",
|
|
|
|
|
f"To clone a project without Git, copy the files from the '{name}' "
|
|
|
|
|
f"directory in the {repo} to {dest} manually and then run:",
|
|
|
|
|
f"{COMMAND} project init {dest}",
|
|
|
|
|
exits=1,
|
|
|
|
|
)
|
2020-06-22 12:53:31 +00:00
|
|
|
|
if not dest:
|
|
|
|
|
msg.fail(f"Not a valid directory to clone project: {dest}", exits=1)
|
|
|
|
|
if dest.exists():
|
|
|
|
|
# Directory already exists (not allowed, clone needs to create it)
|
|
|
|
|
msg.fail(f"Can't clone project, directory already exists: {dest}", exits=1)
|
|
|
|
|
if not dest.parent.exists():
|
|
|
|
|
# We're not creating parents, parent dir should exist
|
|
|
|
|
msg.fail(
|
|
|
|
|
f"Can't clone project, parent directory doesn't exist: {dest.parent}",
|
|
|
|
|
exits=1,
|
|
|
|
|
)
|
2020-06-28 14:25:53 +00:00
|
|
|
|
|
|
|
|
|
|
2020-06-29 14:54:47 +00:00
|
|
|
|
def validate_subcommand(commands: Sequence[str], subcommand: str) -> None:
|
|
|
|
|
"""Check that a subcommand is valid and defined. Raises an error otherwise.
|
|
|
|
|
|
|
|
|
|
commands (Sequence[str]): The available commands.
|
|
|
|
|
subcommand (str): The subcommand.
|
|
|
|
|
"""
|
|
|
|
|
if subcommand not in commands:
|
|
|
|
|
msg.fail(
|
|
|
|
|
f"Can't find command '{subcommand}' in {CONFIG_FILE}. "
|
|
|
|
|
f"Available commands: {', '.join(commands)}",
|
|
|
|
|
exits=1,
|
|
|
|
|
)
|
|
|
|
|
|
|
|
|
|
|
2020-06-28 14:25:53 +00:00
|
|
|
|
def download_file(url: str, dest: Path, chunk_size: int = 1024) -> None:
|
|
|
|
|
"""Download a file using requests.
|
|
|
|
|
|
|
|
|
|
url (str): The URL of the file.
|
|
|
|
|
dest (Path): The destination path.
|
|
|
|
|
chunk_size (int): The size of chunks to read/write.
|
|
|
|
|
"""
|
|
|
|
|
response = requests.get(url, stream=True)
|
|
|
|
|
response.raise_for_status()
|
|
|
|
|
total = int(response.headers.get("content-length", 0))
|
|
|
|
|
progress_settings = {
|
|
|
|
|
"total": total,
|
|
|
|
|
"unit": "iB",
|
|
|
|
|
"unit_scale": True,
|
|
|
|
|
"unit_divisor": chunk_size,
|
|
|
|
|
"leave": False,
|
|
|
|
|
}
|
|
|
|
|
with dest.open("wb") as f, tqdm.tqdm(**progress_settings) as bar:
|
|
|
|
|
for data in response.iter_content(chunk_size=chunk_size):
|
|
|
|
|
size = f.write(data)
|
|
|
|
|
bar.update(size)
|