spaCy/spacy/serialize/packer.pyx

from libc.stdint cimport uint32_t
from libc.stdint cimport uint64_t
from libc.math cimport exp as c_exp
from libcpp.queue cimport priority_queue
from libcpp.pair cimport pair

from cymem.cymem cimport Address, Pool
from preshed.maps cimport PreshMap

from ..attrs cimport ID, SPACY, TAG, HEAD, DEP, ENT_IOB, ENT_TYPE
from ..tokens.doc cimport Doc
from ..vocab cimport Vocab
from ..typedefs cimport attr_t
from .bits cimport BitArray
from .huffman cimport HuffmanCodec

from os import path
import numpy

cimport cython


# Format
# - Total number of bytes in message (32 bit int) --- handled outside this
# - Number of words (32 bit int)
# - Words, terminating in an EOL symbol, huffman coded ~12 bits per word
# - Spaces 1 bit per word
# - Attributes:
#       POS tag
#       Head offset
#       Dep label
#       Entity IOB
#       Entity tag


def make_vocab_codec(Vocab vocab):
    cdef int length = len(vocab)
    cdef Address mem = Address(length, sizeof(float))
    probs = <float*>mem.ptr
    cdef int i
    for i in range(length):
        probs[i] = <float>c_exp(vocab.lexemes[i].prob)
    cdef float[:] cv_probs = <float[:len(vocab)]>probs
    return HuffmanCodec(cv_probs)


cdef class _BinaryCodec:
    def encode(self, src, bits):
        cdef int i
        for i in range(len(src)):
            bits.append(src[i])

    def decode(self, dest, bits, n):
        for i in range(n):
            dest[i] = bits.next()


cdef class _AttributeCodec:
    cdef Pool mem
    cdef attr_t* _keys
    cdef PreshMap _map
    cdef HuffmanCodec _codec

    def __init__(self, freqs):
        cdef uint64_t key
        cdef uint64_t count
        cdef pair[uint64_t, uint64_t] item

        cdef priority_queue[pair[uint64_t, uint64_t]] items

        for key, count in freqs:
            item.first = count
            item.second = key
            items.push(item)
        weights = numpy.array(shape=(len(freqs),), dtype=numpy.float32)
        self._keys = <attr_t*>self.mem.alloc(len(freqs), sizeof(attr_t))
        self._map = PreshMap()
        cdef int i = 0
        while not items.empty():
            item = items.top()
            weights[i] = item.first
            self._keys[i] = item.second
            self._map[self.keys[i]] = i
            items.pop()
        self._codec = HuffmanCodec(weights)

    def encode(self, attr_t[:] msg, BitArray into_bits):
        for i in range(len(msg)):
            msg[i] = self._map[msg[i]]
        self._codec.encode(msg, into_bits)

    def decode(self, BitArray bits, attr_t[:] into_msg):
        cdef int i
        self._codec.decode(bits, into_msg)
        for i in range(len(into_msg)):
            into_msg[i] = self._keys[into_msg[i]]


cdef class Packer:
    def __init__(self, Vocab vocab, list_of_attr_freqs):
        self.vocab = vocab
        codecs = []
        self.attrs = []

        for attr, freqs in list_of_attr_freqs:
            if attr == ID:
                codecs.append(make_vocab_codec(vocab))
            elif attr == SPACY:
                codecs.append(_BinaryCodec())
            else:
                codecs.append(_AttributeCodec(freqs))
            self.attrs.append(attr)
        self._codecs = tuple(codecs)

    def __call__(self, msg_or_bits):
        if isinstance(msg_or_bits, BitArray):
            bits = msg_or_bits
            return Doc.from_array(self.vocab, self.attrs, self.deserialize(bits))
        else:
            msg = msg_or_bits
            return self.serialize(msg.to_array(self.attrs))

    def serialize(self, array):
        cdef BitArray bits = BitArray()
        cdef uint32_t length = len(array)
        bits.extend(length, 32)
        for i, codec in enumerate(self._codecs):
            codec.encode(array[i], bits)
        return bits

    def deserialize(self, bits):
        cdef uint32_t length = bits.read(32)
        array = numpy.ndarray(shape=(len(self.codecs), length), dtype=numpy.int)
        for i, codec in enumerate(self.codecs):
            array[i] = codec.decode(bits)
        return array