2021-12-29 10:04:39 +00:00
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from itertools import islice
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2023-06-14 15:48:41 +00:00
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from typing import Any, Callable, Dict, Iterable, List, Optional
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from thinc.api import Config, Model
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from thinc.types import Floats2d
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2021-01-06 02:07:14 +00:00
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from ..errors import Errors
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2023-06-14 15:48:41 +00:00
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from ..language import Language
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2021-01-06 02:07:14 +00:00
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from ..scorer import Scorer
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from ..tokens import Doc
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from ..training import Example, validate_get_examples
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from ..util import registry
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2021-01-06 02:07:14 +00:00
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from ..vocab import Vocab
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from .textcat import TextCategorizer
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multi_label_default_config = """
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[model]
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@architectures = "spacy.TextCatEnsemble.v2"
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[model.tok2vec]
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@architectures = "spacy.Tok2Vec.v2"
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[model.tok2vec.embed]
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@architectures = "spacy.MultiHashEmbed.v2"
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width = 64
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rows = [2000, 2000, 500, 1000, 500]
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attrs = ["NORM", "LOWER", "PREFIX", "SUFFIX", "SHAPE"]
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include_static_vectors = false
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[model.tok2vec.encode]
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@architectures = "spacy.MaxoutWindowEncoder.v2"
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width = ${model.tok2vec.embed.width}
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window_size = 1
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maxout_pieces = 3
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depth = 2
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[model.linear_model]
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@architectures = "spacy.TextCatBOW.v3"
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exclusive_classes = false
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length = 262144
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ngram_size = 1
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no_output_layer = false
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"""
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DEFAULT_MULTI_TEXTCAT_MODEL = Config().from_str(multi_label_default_config)["model"]
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multi_label_bow_config = """
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[model]
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@architectures = "spacy.TextCatBOW.v3"
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exclusive_classes = false
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ngram_size = 1
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no_output_layer = false
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"""
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multi_label_cnn_config = """
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[model]
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@architectures = "spacy.TextCatReduce.v1"
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exclusive_classes = false
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use_reduce_first = false
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use_reduce_last = false
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use_reduce_max = false
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use_reduce_mean = true
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2021-01-06 02:07:14 +00:00
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[model.tok2vec]
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2021-04-22 08:04:15 +00:00
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@architectures = "spacy.HashEmbedCNN.v2"
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pretrained_vectors = null
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width = 96
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depth = 4
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embed_size = 2000
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window_size = 1
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maxout_pieces = 3
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subword_features = true
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"""
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@Language.factory(
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"textcat_multilabel",
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assigns=["doc.cats"],
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default_config={
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"threshold": 0.5,
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"model": DEFAULT_MULTI_TEXTCAT_MODEL,
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"scorer": {"@scorers": "spacy.textcat_multilabel_scorer.v2"},
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},
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default_score_weights={
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"cats_score": 1.0,
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"cats_score_desc": None,
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"cats_micro_p": None,
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"cats_micro_r": None,
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"cats_micro_f": None,
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"cats_macro_p": None,
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"cats_macro_r": None,
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"cats_macro_f": None,
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"cats_macro_auc": None,
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"cats_f_per_type": None,
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},
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)
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def make_multilabel_textcat(
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nlp: Language,
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name: str,
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model: Model[List[Doc], List[Floats2d]],
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threshold: float,
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scorer: Optional[Callable],
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2022-10-12 13:17:40 +00:00
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) -> "MultiLabel_TextCategorizer":
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"""Create a MultiLabel_TextCategorizer component. The text categorizer predicts categories
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over a whole document. It can learn one or more labels, and the labels are considered
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to be non-mutually exclusive, which means that there can be zero or more labels
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per doc).
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model (Model[List[Doc], List[Floats2d]]): A model instance that predicts
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scores for each category.
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threshold (float): Cutoff to consider a prediction "positive".
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scorer (Optional[Callable]): The scoring method.
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"""
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return MultiLabel_TextCategorizer(
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nlp.vocab, model, name, threshold=threshold, scorer=scorer
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)
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def textcat_multilabel_score(examples: Iterable[Example], **kwargs) -> Dict[str, Any]:
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return Scorer.score_cats(
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examples,
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"cats",
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multi_label=True,
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**kwargs,
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)
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@registry.scorers("spacy.textcat_multilabel_scorer.v2")
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def make_textcat_multilabel_scorer():
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return textcat_multilabel_score
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class MultiLabel_TextCategorizer(TextCategorizer):
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"""Pipeline component for multi-label text classification.
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2021-03-09 12:04:22 +00:00
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DOCS: https://spacy.io/api/textcategorizer
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2021-01-06 02:07:14 +00:00
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"""
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def __init__(
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self,
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vocab: Vocab,
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model: Model,
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name: str = "textcat_multilabel",
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*,
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threshold: float,
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scorer: Optional[Callable] = textcat_multilabel_score,
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) -> None:
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"""Initialize a text categorizer for multi-label classification.
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vocab (Vocab): The shared vocabulary.
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model (thinc.api.Model): The Thinc Model powering the pipeline component.
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name (str): The component instance name, used to add entries to the
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losses during training.
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threshold (float): Cutoff to consider a prediction "positive".
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2022-10-12 13:17:40 +00:00
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scorer (Optional[Callable]): The scoring method.
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2021-01-06 02:07:14 +00:00
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2021-03-09 12:04:22 +00:00
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DOCS: https://spacy.io/api/textcategorizer#init
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2021-01-06 02:07:14 +00:00
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"""
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self.vocab = vocab
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self.model = model
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self.name = name
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self._rehearsal_model = None
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cfg = {"labels": [], "threshold": threshold}
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self.cfg = dict(cfg)
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self.scorer = scorer
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2021-01-06 02:07:14 +00:00
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@property
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def support_missing_values(self):
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return True
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🏷 Add Mypy check to CI and ignore all existing Mypy errors (#9167)
* 🚨 Ignore all existing Mypy errors
* 🏗 Add Mypy check to CI
* Add types-mock and types-requests as dev requirements
* Add additional type ignore directives
* Add types packages to dev-only list in reqs test
* Add types-dataclasses for python 3.6
* Add ignore to pretrain
* 🏷 Improve type annotation on `run_command` helper
The `run_command` helper previously declared that it returned an
`Optional[subprocess.CompletedProcess]`, but it isn't actually possible
for the function to return `None`. These changes modify the type
annotation of the `run_command` helper and remove all now-unnecessary
`# type: ignore` directives.
* 🔧 Allow variable type redefinition in limited contexts
These changes modify how Mypy is configured to allow variables to have
their type automatically redefined under certain conditions. The Mypy
documentation contains the following example:
```python
def process(items: List[str]) -> None:
# 'items' has type List[str]
items = [item.split() for item in items]
# 'items' now has type List[List[str]]
...
```
This configuration change is especially helpful in reducing the number
of `# type: ignore` directives needed to handle the common pattern of:
* Accepting a filepath as a string
* Overwriting the variable using `filepath = ensure_path(filepath)`
These changes enable redefinition and remove all `# type: ignore`
directives rendered redundant by this change.
* 🏷 Add type annotation to converters mapping
* 🚨 Fix Mypy error in convert CLI argument verification
* 🏷 Improve type annotation on `resolve_dot_names` helper
* 🏷 Add type annotations for `Vocab` attributes `strings` and `vectors`
* 🏷 Add type annotations for more `Vocab` attributes
* 🏷 Add loose type annotation for gold data compilation
* 🏷 Improve `_format_labels` type annotation
* 🏷 Fix `get_lang_class` type annotation
* 🏷 Loosen return type of `Language.evaluate`
* 🏷 Don't accept `Scorer` in `handle_scores_per_type`
* 🏷 Add `string_to_list` overloads
* 🏷 Fix non-Optional command-line options
* 🙈 Ignore redefinition of `wandb_logger` in `loggers.py`
* ➕ Install `typing_extensions` in Python 3.8+
The `typing_extensions` package states that it should be used when
"writing code that must be compatible with multiple Python versions".
Since SpaCy needs to support multiple Python versions, it should be used
when newer `typing` module members are required. One example of this is
`Literal`, which is available starting with Python 3.8.
Previously SpaCy tried to import `Literal` from `typing`, falling back
to `typing_extensions` if the import failed. However, Mypy doesn't seem
to be able to understand what `Literal` means when the initial import
means. Therefore, these changes modify how `compat` imports `Literal` by
always importing it from `typing_extensions`.
These changes also modify how `typing_extensions` is installed, so that
it is a requirement for all Python versions, including those greater
than or equal to 3.8.
* 🏷 Improve type annotation for `Language.pipe`
These changes add a missing overload variant to the type signature of
`Language.pipe`. Additionally, the type signature is enhanced to allow
type checkers to differentiate between the two overload variants based
on the `as_tuple` parameter.
Fixes #8772
* ➖ Don't install `typing-extensions` in Python 3.8+
After more detailed analysis of how to implement Python version-specific
type annotations using SpaCy, it has been determined that by branching
on a comparison against `sys.version_info` can be statically analyzed by
Mypy well enough to enable us to conditionally use
`typing_extensions.Literal`. This means that we no longer need to
install `typing_extensions` for Python versions greater than or equal to
3.8! 🎉
These changes revert previous changes installing `typing-extensions`
regardless of Python version and modify how we import the `Literal` type
to ensure that Mypy treats it properly.
* resolve mypy errors for Strict pydantic types
* refactor code to avoid missing return statement
* fix types of convert CLI command
* avoid list-set confustion in debug_data
* fix typo and formatting
* small fixes to avoid type ignores
* fix types in profile CLI command and make it more efficient
* type fixes in projects CLI
* put one ignore back
* type fixes for render
* fix render types - the sequel
* fix BaseDefault in language definitions
* fix type of noun_chunks iterator - yields tuple instead of span
* fix types in language-specific modules
* 🏷 Expand accepted inputs of `get_string_id`
`get_string_id` accepts either a string (in which case it returns its
ID) or an ID (in which case it immediately returns the ID). These
changes extend the type annotation of `get_string_id` to indicate that
it can accept either strings or IDs.
* 🏷 Handle override types in `combine_score_weights`
The `combine_score_weights` function allows users to pass an `overrides`
mapping to override data extracted from the `weights` argument. Since it
allows `Optional` dictionary values, the return value may also include
`Optional` dictionary values.
These changes update the type annotations for `combine_score_weights` to
reflect this fact.
* 🏷 Fix tokenizer serialization method signatures in `DummyTokenizer`
* 🏷 Fix redefinition of `wandb_logger`
These changes fix the redefinition of `wandb_logger` by giving a
separate name to each `WandbLogger` version. For
backwards-compatibility, `spacy.train` still exports `wandb_logger_v3`
as `wandb_logger` for now.
* more fixes for typing in language
* type fixes in model definitions
* 🏷 Annotate `_RandomWords.probs` as `NDArray`
* 🏷 Annotate `tok2vec` layers to help Mypy
* 🐛 Fix `_RandomWords.probs` type annotations for Python 3.6
Also remove an import that I forgot to move to the top of the module 😅
* more fixes for matchers and other pipeline components
* quick fix for entity linker
* fixing types for spancat, textcat, etc
* bugfix for tok2vec
* type annotations for scorer
* add runtime_checkable for Protocol
* type and import fixes in tests
* mypy fixes for training utilities
* few fixes in util
* fix import
* 🐵 Remove unused `# type: ignore` directives
* 🏷 Annotate `Language._components`
* 🏷 Annotate `spacy.pipeline.Pipe`
* add doc as property to span.pyi
* small fixes and cleanup
* explicit type annotations instead of via comment
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
Co-authored-by: svlandeg <svlandeg@github.com>
2021-10-14 13:21:40 +00:00
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def initialize( # type: ignore[override]
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2021-01-06 02:07:14 +00:00
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self,
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get_examples: Callable[[], Iterable[Example]],
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*,
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nlp: Optional[Language] = None,
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2021-02-04 22:37:13 +00:00
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labels: Optional[Iterable[str]] = None,
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2021-01-06 02:07:14 +00:00
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):
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"""Initialize the pipe for training, using a representative set
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of data examples.
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get_examples (Callable[[], Iterable[Example]]): Function that
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returns a representative sample of gold-standard Example objects.
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nlp (Language): The current nlp object the component is part of.
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labels: The labels to add to the component, typically generated by the
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`init labels` command. If no labels are provided, the get_examples
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callback is used to extract the labels from the data.
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2021-03-09 12:04:22 +00:00
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DOCS: https://spacy.io/api/textcategorizer#initialize
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2021-01-06 02:07:14 +00:00
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"""
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validate_get_examples(get_examples, "MultiLabel_TextCategorizer.initialize")
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if labels is None:
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for example in get_examples():
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for cat in example.y.cats:
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self.add_label(cat)
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else:
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for label in labels:
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self.add_label(label)
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subbatch = list(islice(get_examples(), 10))
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2022-11-17 09:25:01 +00:00
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self._validate_categories(subbatch)
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2021-01-06 02:07:14 +00:00
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doc_sample = [eg.reference for eg in subbatch]
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label_sample, _ = self._examples_to_truth(subbatch)
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self._require_labels()
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assert len(doc_sample) > 0, Errors.E923.format(name=self.name)
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assert len(label_sample) > 0, Errors.E923.format(name=self.name)
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self.model.initialize(X=doc_sample, Y=label_sample)
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|
🏷 Add Mypy check to CI and ignore all existing Mypy errors (#9167)
* 🚨 Ignore all existing Mypy errors
* 🏗 Add Mypy check to CI
* Add types-mock and types-requests as dev requirements
* Add additional type ignore directives
* Add types packages to dev-only list in reqs test
* Add types-dataclasses for python 3.6
* Add ignore to pretrain
* 🏷 Improve type annotation on `run_command` helper
The `run_command` helper previously declared that it returned an
`Optional[subprocess.CompletedProcess]`, but it isn't actually possible
for the function to return `None`. These changes modify the type
annotation of the `run_command` helper and remove all now-unnecessary
`# type: ignore` directives.
* 🔧 Allow variable type redefinition in limited contexts
These changes modify how Mypy is configured to allow variables to have
their type automatically redefined under certain conditions. The Mypy
documentation contains the following example:
```python
def process(items: List[str]) -> None:
# 'items' has type List[str]
items = [item.split() for item in items]
# 'items' now has type List[List[str]]
...
```
This configuration change is especially helpful in reducing the number
of `# type: ignore` directives needed to handle the common pattern of:
* Accepting a filepath as a string
* Overwriting the variable using `filepath = ensure_path(filepath)`
These changes enable redefinition and remove all `# type: ignore`
directives rendered redundant by this change.
* 🏷 Add type annotation to converters mapping
* 🚨 Fix Mypy error in convert CLI argument verification
* 🏷 Improve type annotation on `resolve_dot_names` helper
* 🏷 Add type annotations for `Vocab` attributes `strings` and `vectors`
* 🏷 Add type annotations for more `Vocab` attributes
* 🏷 Add loose type annotation for gold data compilation
* 🏷 Improve `_format_labels` type annotation
* 🏷 Fix `get_lang_class` type annotation
* 🏷 Loosen return type of `Language.evaluate`
* 🏷 Don't accept `Scorer` in `handle_scores_per_type`
* 🏷 Add `string_to_list` overloads
* 🏷 Fix non-Optional command-line options
* 🙈 Ignore redefinition of `wandb_logger` in `loggers.py`
* ➕ Install `typing_extensions` in Python 3.8+
The `typing_extensions` package states that it should be used when
"writing code that must be compatible with multiple Python versions".
Since SpaCy needs to support multiple Python versions, it should be used
when newer `typing` module members are required. One example of this is
`Literal`, which is available starting with Python 3.8.
Previously SpaCy tried to import `Literal` from `typing`, falling back
to `typing_extensions` if the import failed. However, Mypy doesn't seem
to be able to understand what `Literal` means when the initial import
means. Therefore, these changes modify how `compat` imports `Literal` by
always importing it from `typing_extensions`.
These changes also modify how `typing_extensions` is installed, so that
it is a requirement for all Python versions, including those greater
than or equal to 3.8.
* 🏷 Improve type annotation for `Language.pipe`
These changes add a missing overload variant to the type signature of
`Language.pipe`. Additionally, the type signature is enhanced to allow
type checkers to differentiate between the two overload variants based
on the `as_tuple` parameter.
Fixes #8772
* ➖ Don't install `typing-extensions` in Python 3.8+
After more detailed analysis of how to implement Python version-specific
type annotations using SpaCy, it has been determined that by branching
on a comparison against `sys.version_info` can be statically analyzed by
Mypy well enough to enable us to conditionally use
`typing_extensions.Literal`. This means that we no longer need to
install `typing_extensions` for Python versions greater than or equal to
3.8! 🎉
These changes revert previous changes installing `typing-extensions`
regardless of Python version and modify how we import the `Literal` type
to ensure that Mypy treats it properly.
* resolve mypy errors for Strict pydantic types
* refactor code to avoid missing return statement
* fix types of convert CLI command
* avoid list-set confustion in debug_data
* fix typo and formatting
* small fixes to avoid type ignores
* fix types in profile CLI command and make it more efficient
* type fixes in projects CLI
* put one ignore back
* type fixes for render
* fix render types - the sequel
* fix BaseDefault in language definitions
* fix type of noun_chunks iterator - yields tuple instead of span
* fix types in language-specific modules
* 🏷 Expand accepted inputs of `get_string_id`
`get_string_id` accepts either a string (in which case it returns its
ID) or an ID (in which case it immediately returns the ID). These
changes extend the type annotation of `get_string_id` to indicate that
it can accept either strings or IDs.
* 🏷 Handle override types in `combine_score_weights`
The `combine_score_weights` function allows users to pass an `overrides`
mapping to override data extracted from the `weights` argument. Since it
allows `Optional` dictionary values, the return value may also include
`Optional` dictionary values.
These changes update the type annotations for `combine_score_weights` to
reflect this fact.
* 🏷 Fix tokenizer serialization method signatures in `DummyTokenizer`
* 🏷 Fix redefinition of `wandb_logger`
These changes fix the redefinition of `wandb_logger` by giving a
separate name to each `WandbLogger` version. For
backwards-compatibility, `spacy.train` still exports `wandb_logger_v3`
as `wandb_logger` for now.
* more fixes for typing in language
* type fixes in model definitions
* 🏷 Annotate `_RandomWords.probs` as `NDArray`
* 🏷 Annotate `tok2vec` layers to help Mypy
* 🐛 Fix `_RandomWords.probs` type annotations for Python 3.6
Also remove an import that I forgot to move to the top of the module 😅
* more fixes for matchers and other pipeline components
* quick fix for entity linker
* fixing types for spancat, textcat, etc
* bugfix for tok2vec
* type annotations for scorer
* add runtime_checkable for Protocol
* type and import fixes in tests
* mypy fixes for training utilities
* few fixes in util
* fix import
* 🐵 Remove unused `# type: ignore` directives
* 🏷 Annotate `Language._components`
* 🏷 Annotate `spacy.pipeline.Pipe`
* add doc as property to span.pyi
* small fixes and cleanup
* explicit type annotations instead of via comment
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
Co-authored-by: svlandeg <svlandeg@github.com>
2021-10-14 13:21:40 +00:00
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def _validate_categories(self, examples: Iterable[Example]):
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2021-01-06 02:07:14 +00:00
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"""This component allows any type of single- or multi-label annotations.
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2021-01-15 00:57:36 +00:00
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This method overwrites the more strict one from 'textcat'."""
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2022-11-17 09:25:01 +00:00
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# check that annotation values are valid
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for ex in examples:
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for val in ex.reference.cats.values():
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if not (val == 1.0 or val == 0.0):
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raise ValueError(Errors.E851.format(val=val))
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