mirror of https://github.com/pyodide/pyodide.git
147 lines
5.3 KiB
YAML
147 lines
5.3 KiB
YAML
package:
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name: scipy
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version: 1.8.0
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# See extra explanation in info.md
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#
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# For future reference: if you see the following errors:
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# Declaration error: adjustable dimension on non-argument
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# or:
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# nonconstant array size
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# you are trying to compile code that isn't written to the fortran 77 standard.
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# The line number in the error points to the last line of the problematic
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# subroutine. Try deleting it.
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source:
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url: https://files.pythonhosted.org/packages/b4/a2/4faa34bf0cdbefd5c706625f1234987795f368eb4e97bde9d6f46860843e/scipy-1.8.0.tar.gz
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sha256: 31d4f2d6b724bc9a98e527b5849b8a7e589bf1ea630c33aa563eda912c9ff0bd
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patches:
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- patches/0001-Fix-dstevr-in-special-lapack_defs.h.patch
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- patches/0002-loadDynamicLibrary-flapack.patch
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- patches/0003-Add-lapack_extras-to-linalg-setup.py.patch
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- patches/0004-int-to-string.patch
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- patches/0005-disable-blas-detection.patch
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- patches/0006-fix-fotran-files-minpack.patch
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- patches/0007-gemm_-no-const.patch
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- patches/0008-make-int-return-values.patch
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- patches/0009-Rename-_page_trend_test.py-to-prevent-test-unvendori.patch
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- patches/0010-sasum-returns-double-not-float.patch
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- patches/0011-skip-fortran-fails-to-link.patch
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- patches/0012-Disable-lapack-detection.patch
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- patches/0013-Add-extra-END-to-prini.f.patch
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- patches/0014-BUG-Fix-signature-of-D_IIR_forback-1-2.patch
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build:
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cflags: |
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-I$(WASM_LIBRARY_DIR)/CLAPACK/INCLUDE
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-I$(HOSTSITEPACKAGES)/pythran/
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-Wno-return-type
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-DUNDERSCORE_G77
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ldflags: |
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-L$(NUMPY_LIB)/core/lib/
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-L$(NUMPY_LIB)/random/lib/
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# IMPORTANT: Other locations important in scipy build process:
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# There are two files built in the "capture" pass that need patching:
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# _blas_subroutines.h, and _cython
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# Scipy has a bunch of custom logic implemented in
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# pyodide-build/pyodide_build/_f2c_fixes.py.
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script: |
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pip install -t $HOSTSITEPACKAGES pythran
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# We get linker errors because the following 36 functions are missing
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# Copying them from a more recent LAPACK seems to work fine.
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wget https://github.com/Reference-LAPACK/lapack/archive/refs/tags/v3.10.0.tar.gz
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tar xzf v3.10.0.tar.gz
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cd lapack-3.10.0/SRC
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cat \
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cgemqrt.f cgeqrfp.f cgeqrt.f clahqr.f csyconv.f csyconvf.f csyconvf_rook.f ctpmqrt.f ctpqrt.f cuncsd.f \
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dgemqrt.f dgeqrfp.f dgeqrt.f dlahqr.f dsyconv.f dsyconvf.f dsyconvf_rook.f dtpmqrt.f dtpqrt.f dorcsd.f \
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sgemqrt.f sgeqrfp.f sgeqrt.f slahqr.f ssyconv.f ssyconvf.f ssyconvf_rook.f stpmqrt.f stpqrt.f sorcsd.f \
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zgemqrt.f zgeqrfp.f zgeqrt.f zlahqr.f zsyconv.f zsyconvf.f zsyconvf_rook.f ztpmqrt.f ztpqrt.f zuncsd.f \
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>> ../../scipy/linalg/lapack_extras.f
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sed -i 's/CHARACTER/INTEGER/g' ../../scipy/linalg/lapack_extras.f
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sed -i 's/RECURSIVE//g' ../../scipy/linalg/lapack_extras.f
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cd ../..
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# Change many functions that return void into functions that return int
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find scipy -name "*.c*" | xargs sed -i 's/extern void F_FUNC/extern int F_FUNC/g'
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sed -i 's/void F_FUNC/int F_FUNC/g' scipy/odr/__odrpack.c
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sed -i 's/^void/int/g' scipy/odr/odrpack.h
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sed -i 's/^void/int/g' scipy/odr/__odrpack.c
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sed -i 's/void BLAS_FUNC/int BLAS_FUNC/g' scipy/special/lapack_defs.h
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# sed -i 's/void F_FUNC/int F_FUNC/g' scipy/linalg/_lapack_subroutines.h
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sed -i 's/extern void/extern int/g' scipy/optimize/__minpack.h
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sed -i 's/void/int/g' scipy/linalg/cython_blas_signatures.txt
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sed -i 's/^void/int/g' scipy/interpolate/src/_fitpackmodule.c
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sed -i 's/^void/int/g' scipy/optimize/_trlib/trlib_private.h
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sed -i 's/^void/int/g' scipy/optimize/_trlib/trlib/trlib_private.h
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sed -i 's/, int)/)/g' scipy/optimize/_trlib/trlib_private.h
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sed -i 's/, 1)/)/g' scipy/optimize/_trlib/trlib_private.h
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sed -i 's/^void/int/g' scipy/spatial/qhull_misc.h
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sed -i 's/, size_t)/)/g' scipy/spatial/qhull_misc.h
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sed -i 's/,1)/)/g' scipy/spatial/qhull_misc.h
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# Missing declaration from cython_lapack_signatures.txt
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echo "void ilaenv(int *ispec, char *name, char *opts, int *n1, int *n2, int *n3, int *n4)" \
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>> scipy/linalg/cython_lapack_signatures.txt
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# sed -i 's/^void/int/g' scipy/linalg/cython_lapack_signatures.txt
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# Input error causes "duplicate symbol" linker errors. Empty out the file.
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echo "" > scipy/sparse/linalg/_dsolve/SuperLU/SRC/input_error.c
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cross-build-env: true
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cross-build-files:
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- scipy/linalg/cython_lapack.pxd
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- scipy/linalg/cython_blas.pxd
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requirements:
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run:
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- numpy
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- CLAPACK
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test:
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imports:
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- scipy
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- scipy.cluster
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- scipy.cluster.vq
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- scipy.cluster.hierarchy
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- scipy.constants
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- scipy.fft
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- scipy.fftpack
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- scipy.integrate
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- scipy.interpolate
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- scipy.io
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- scipy.io.arff
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- scipy.io.matlab
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- scipy.io.wavfile
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- scipy.linalg
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- scipy.linalg.blas
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- scipy.linalg.cython_blas
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- scipy.linalg.lapack
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- scipy.linalg.cython_lapack
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- scipy.linalg.interpolative
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- scipy.misc
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- scipy.ndimage
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- scipy.odr
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- scipy.optimize
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- scipy.signal
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- scipy.signal.windows
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- scipy.sparse
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- scipy.sparse.linalg
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- scipy.sparse.csgraph
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- scipy.spatial
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- scipy.spatial.distance
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- scipy.spatial.transform
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- scipy.special
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- scipy.stats
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- scipy.stats.contingency
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- scipy.stats.distributions
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- scipy.stats.mstats
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- scipy.stats.qmc
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