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pyodide/packages/scipy/patches/disable_modules_with_blas.p...

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commit 5c2a77219d5bd92c48d8d5d5e71ba28228c282a1
Author: Roman Yurchak <rth.yurchak@pm.me>
Date: Mon Oct 8 10:53:11 2018 +0200
Removes files that require LAPACK
diff --git a/scipy/linalg/__init__.py b/scipy/linalg/__init__.py
index fd02851bf..faa6723d2 100644
--- a/scipy/linalg/__init__.py
+++ b/scipy/linalg/__init__.py
@@ -181,13 +181,16 @@ from ._decomp_qz import *
from .decomp_svd import *
from .decomp_schur import *
from ._decomp_polar import *
-from .matfuncs import *
-from .blas import *
-from .lapack import *
-from .special_matrices import *
-from ._solvers import *
-from ._procrustes import *
-from ._decomp_update import *
+try:
+ from .matfuncs import *
+ from .blas import *
+ from .lapack import *
+ from .special_matrices import *
+ from ._solvers import *
+ from ._procrustes import *
+ from ._decomp_update import *
+except ImportError:
+ pass
__all__ = [s for s in dir() if not s.startswith('_')]
diff --git a/scipy/linalg/setup.py b/scipy/linalg/setup.py
index 2c9b9ba22..035b4bb80 100755
--- a/scipy/linalg/setup.py
+++ b/scipy/linalg/setup.py
@@ -16,8 +16,8 @@ def configuration(parent_package='', top_path=None):
lapack_opt = get_info('lapack_opt')
- if not lapack_opt:
- raise NotFoundError('no lapack/blas resources found')
+ # if not lapack_opt:
+ # raise NotFoundError('no lapack/blas resources found')
atlas_version = ([v[3:-3] for k, v in lapack_opt.get('define_macros', [])
if k == 'ATLAS_INFO']+[None])[0]
@@ -29,45 +29,45 @@ def configuration(parent_package='', top_path=None):
sources += get_g77_abi_wrappers(lapack_opt)
sources += get_sgemv_fix(lapack_opt)
- config.add_extension('_fblas',
- sources=sources,
- depends=['fblas_l?.pyf.src'],
- extra_info=lapack_opt
- )
+ #config.add_extension('_fblas',
+ # sources=sources,
+ # depends=['fblas_l?.pyf.src'],
+ # extra_info=lapack_opt
+ # )
# flapack:
- sources = ['flapack.pyf.src']
- sources += get_g77_abi_wrappers(lapack_opt)
- dep_pfx = join('src', 'lapack_deprecations')
- deprecated_lapack_routines = [join(dep_pfx, c + 'gegv.f') for c in 'cdsz']
- sources += deprecated_lapack_routines
-
- config.add_extension('_flapack',
- sources=sources,
- depends=['flapack_user.pyf.src'],
- extra_info=lapack_opt
- )
-
- if atlas_version is not None:
- # cblas:
- config.add_extension('_cblas',
- sources=['cblas.pyf.src'],
- depends=['cblas.pyf.src', 'cblas_l1.pyf.src'],
- extra_info=lapack_opt
- )
-
- # clapack:
- config.add_extension('_clapack',
- sources=['clapack.pyf.src'],
- depends=['clapack.pyf.src'],
- extra_info=lapack_opt
- )
-
- # _flinalg:
- config.add_extension('_flinalg',
- sources=[join('src', 'det.f'), join('src', 'lu.f')],
- extra_info=lapack_opt
- )
+ #sources = ['flapack.pyf.src']
+ #sources += get_g77_abi_wrappers(lapack_opt)
+ #dep_pfx = join('src', 'lapack_deprecations')
+ #deprecated_lapack_routines = [join(dep_pfx, c + 'gegv.f') for c in 'cdsz']
+ #sources += deprecated_lapack_routines
+
+ #config.add_extension('_flapack',
+ # sources=sources,
+ # depends=['flapack_user.pyf.src'],
+ # extra_info=lapack_opt
+ # )
+
+ #if atlas_version is not None:
+ # # cblas:
+ # config.add_extension('_cblas',
+ # sources=['cblas.pyf.src'],
+ # depends=['cblas.pyf.src', 'cblas_l1.pyf.src'],
+ # extra_info=lapack_opt
+ # )
+
+ # # clapack:
+ # config.add_extension('_clapack',
+ # sources=['clapack.pyf.src'],
+ # depends=['clapack.pyf.src'],
+ # extra_info=lapack_opt
+ # )
+
+ ## _flinalg:
+ #config.add_extension('_flinalg',
+ # sources=[join('src', 'det.f'), join('src', 'lu.f')],
+ # extra_info=lapack_opt
+ # )
# _interpolative:
routines_to_split = [
@@ -116,15 +116,15 @@ def configuration(parent_package='', top_path=None):
dirname = os.path.split(os.path.abspath(__file__))[0]
fnames = split_fortran_files(join(dirname, 'src', 'id_dist', 'src'),
routines_to_split)
- fnames = [join('src', 'id_dist', 'src', f) for f in fnames]
- config.add_extension('_interpolative', fnames + ["interpolative.pyf"],
- extra_info=lapack_opt
- )
+ #fnames = [join('src', 'id_dist', 'src', f) for f in fnames]
+ #config.add_extension('_interpolative', fnames + ["interpolative.pyf"],
+ # extra_info=lapack_opt
+ # )
# _calc_lwork:
- config.add_extension('_calc_lwork',
- [join('src', 'calc_lwork.f')],
- extra_info=lapack_opt)
+ #config.add_extension('_calc_lwork',
+ # [join('src', 'calc_lwork.f')],
+ # extra_info=lapack_opt)
# _solve_toeplitz:
config.add_extension('_solve_toeplitz',
@@ -137,27 +137,27 @@ def configuration(parent_package='', top_path=None):
config.add_data_files('cython_blas.pxd')
config.add_data_files('cython_lapack.pxd')
- sources = ['_blas_subroutine_wrappers.f', '_lapack_subroutine_wrappers.f']
- sources += get_g77_abi_wrappers(lapack_opt)
- sources += get_sgemv_fix(lapack_opt)
- includes = numpy_info().get_include_dirs() + [get_python_inc()]
- config.add_library('fwrappers', sources=sources, include_dirs=includes)
-
- config.add_extension('cython_blas',
- sources=['cython_blas.c'],
- depends=['cython_blas.pyx', 'cython_blas.pxd',
- 'fortran_defs.h', '_blas_subroutines.h'],
- include_dirs=['.'],
- libraries=['fwrappers'],
- extra_info=lapack_opt)
-
- config.add_extension('cython_lapack',
- sources=['cython_lapack.c'],
- depends=['cython_lapack.pyx', 'cython_lapack.pxd',
- 'fortran_defs.h', '_lapack_subroutines.h'],
- include_dirs=['.'],
- libraries=['fwrappers'],
- extra_info=lapack_opt)
+ #sources = ['_blas_subroutine_wrappers.f', '_lapack_subroutine_wrappers.f']
+ #sources += get_g77_abi_wrappers(lapack_opt)
+ #sources += get_sgemv_fix(lapack_opt)
+ #includes = numpy_info().get_include_dirs() + [get_python_inc()]
+ #config.add_library('fwrappers', sources=sources, include_dirs=includes)
+
+ #config.add_extension('cython_blas',
+ # sources=['cython_blas.c'],
+ # depends=['cython_blas.pyx', 'cython_blas.pxd',
+ # 'fortran_defs.h', '_blas_subroutines.h'],
+ # include_dirs=['.'],
+ # libraries=['fwrappers'],
+ # extra_info=lapack_opt)
+
+ #config.add_extension('cython_lapack',
+ # sources=['cython_lapack.c'],
+ # depends=['cython_lapack.pyx', 'cython_lapack.pxd',
+ # 'fortran_defs.h', '_lapack_subroutines.h'],
+ # include_dirs=['.'],
+ # libraries=['fwrappers'],
+ # extra_info=lapack_opt)
config.add_extension('_decomp_update',
sources=['_decomp_update.c'])
diff --git a/scipy/sparse/linalg/eigen/arpack/setup.py b/scipy/sparse/linalg/eigen/arpack/setup.py
index a8175a9d5..c63b76dda 100755
--- a/scipy/sparse/linalg/eigen/arpack/setup.py
+++ b/scipy/sparse/linalg/eigen/arpack/setup.py
@@ -13,28 +13,28 @@ def configuration(parent_package='',top_path=None):
lapack_opt = get_info('lapack_opt')
- if not lapack_opt:
- raise NotFoundError('no lapack/blas resources found')
+ #if not lapack_opt:
+ # raise NotFoundError('no lapack/blas resources found')
config = Configuration('arpack', parent_package, top_path)
- arpack_sources = [join('ARPACK','SRC', '*.f')]
- arpack_sources.extend([join('ARPACK','UTIL', '*.f')])
- arpack_sources.extend([join('ARPACK','LAPACK', '*.f')])
+ #arpack_sources = [join('ARPACK','SRC', '*.f')]
+ #arpack_sources.extend([join('ARPACK','UTIL', '*.f')])
+ #arpack_sources.extend([join('ARPACK','LAPACK', '*.f')])
- arpack_sources += get_g77_abi_wrappers(lapack_opt)
+ #arpack_sources += get_g77_abi_wrappers(lapack_opt)
- config.add_library('arpack_scipy', sources=arpack_sources,
- include_dirs=[join('ARPACK', 'SRC')])
+ #config.add_library('arpack_scipy', sources=arpack_sources,
+ # include_dirs=[join('ARPACK', 'SRC')])
- ext_sources = ['arpack.pyf.src']
- ext_sources += get_sgemv_fix(lapack_opt)
- config.add_extension('_arpack',
- sources=ext_sources,
- libraries=['arpack_scipy'],
- extra_info=lapack_opt,
- depends=arpack_sources,
- )
+ #ext_sources = ['arpack.pyf.src']
+ #ext_sources += get_sgemv_fix(lapack_opt)
+ #config.add_extension('_arpack',
+ # sources=ext_sources,
+ # libraries=['arpack_scipy'],
+ # extra_info=lapack_opt,
+ # depends=arpack_sources,
+ # )
config.add_data_dir('tests')
return config
diff --git a/scipy/sparse/linalg/isolve/setup.py b/scipy/sparse/linalg/isolve/setup.py
index becb9237a..17288207e 100755
--- a/scipy/sparse/linalg/isolve/setup.py
+++ b/scipy/sparse/linalg/isolve/setup.py
@@ -13,29 +13,29 @@ def configuration(parent_package='',top_path=None):
lapack_opt = get_info('lapack_opt')
- if not lapack_opt:
- raise NotFoundError('no lapack/blas resources found')
-
- # iterative methods
- methods = ['BiCGREVCOM.f.src',
- 'BiCGSTABREVCOM.f.src',
- 'CGREVCOM.f.src',
- 'CGSREVCOM.f.src',
-# 'ChebyREVCOM.f.src',
- 'GMRESREVCOM.f.src',
-# 'JacobiREVCOM.f.src',
- 'QMRREVCOM.f.src',
-# 'SORREVCOM.f.src'
- ]
-
- Util = ['STOPTEST2.f.src','getbreak.f.src']
- sources = Util + methods + ['_iterative.pyf.src']
- sources = [join('iterative', x) for x in sources]
- sources += get_g77_abi_wrappers(lapack_opt)
-
- config.add_extension('_iterative',
- sources=sources,
- extra_info=lapack_opt)
+ #if not lapack_opt:
+ # raise NotFoundError('no lapack/blas resources found')
+
+ ## iterative methods
+ #methods = ['BiCGREVCOM.f.src',
+ # 'BiCGSTABREVCOM.f.src',
+ # 'CGREVCOM.f.src',
+ # 'CGSREVCOM.f.src',
+# # 'ChebyREVCOM.f.src',
+ # 'GMRESREVCOM.f.src',
+# # 'JacobiREVCOM.f.src',
+ # 'QMRREVCOM.f.src',
+# # 'SORREVCOM.f.src'
+ # ]
+
+ #Util = ['STOPTEST2.f.src','getbreak.f.src']
+ #sources = Util + methods + ['_iterative.pyf.src']
+ #sources = [join('iterative', x) for x in sources]
+ #sources += get_g77_abi_wrappers(lapack_opt)
+
+ #config.add_extension('_iterative',
+ # sources=sources,
+ # extra_info=lapack_opt)
config.add_data_dir('tests')
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