pyodide/packages/scipy/meta.yaml

package:
  name: scipy
  version: 0.17.1

source:
  # We can't use the version from PyPi as it includes Cythonized files
  # generated with an older Cython that does not support Python 3.7
  # This requires,
  #    pip install Cython Tempita
  # on the host for the build
  url: https://github.com/scipy/scipy/archive/v0.17.1.tar.gz
  sha256: bf22383d9e2526ffdc53a6c7d3d66dab45a86291ed35d8e281bd1a5d2c34187b

  patches:
    # these patches can be found as commits in
    #    https://github.com/rth/scipy/tree/0.17.1-pyodide
    # on top of the v0.17.1 tag
    - patches/fix-blas.patch
    - patches/fix-build-gcc5-a80460.patch
    - patches/force_malloc.patch
    - patches/disable_scipy_stats_mvn.patch
    - patches/skip-fortran-fails-to-link.patch
    - patches/skip_ellip_harm_2_pyx_ctypes.patch
    - patches/make-int-return-values.patch
    - patches/add-missing-extern.patch
    - patches/fix-typo-flapack-pyf.patch

build:
  # set linker and C flags to error on anything to do with function declarations being wrong.
  # In webassembbly, any conflicts mean that a randomly selected 50% of calls to the function
  # will fail. Better to fail at compile or link time.
  cflags: |
    -I $(PYODIDE_ROOT)/packages/numpy/config
    -I$(PYODIDE_ROOT)/packages/CLAPACK/build/CLAPACK-3.2.1/INCLUDE
    -DUNDERSCORE_G77
    -Werror=implicit-function-declaration
    -Werror=mismatched-parameter-types
    -Werror=mismatched-return-types
  ldflags: |
    -L$(NUMPY_LIB)
    -Wl,--fatal-warnings
  script: |
    # Some fixes were extracted from patches/make-int-return-values.patch as regex.
    find scipy -name "*.c*" | xargs sed -i 's/extern void F_FUNC/extern int F_FUNC/g'
    sed -i 's/void F_FUNC/int F_FUNC/g' scipy/odr/__odrpack.c
    sed -i 's/extern void/extern int/g' scipy/optimize/__minpack.h scipy/fftpack/src/zfftnd.c scipy/fftpack/src/zrfft.c
    sed -i 's/void f_/int f_/g' scipy/cluster/cluster_blas.pxd
    sed -i 's/void @pref/int @pref/g' scipy/fftpack/src/dct.c.src scipy/fftpack/src/dst.c.src
    sed -i 's/^void/int/g' scipy/interpolate/src/__fitpack.h scipy/integrate/__quadpack.h scipy/fftpack/src/drfft.c scipy/fftpack/src/zfft.c
    sed -i 's/static void/static int/g' scipy/interpolate/src/__fitpack.h
    sed -i 's/ILAENV/ILAENZ/g' scipy/linalg/src/calc_lwork.f
    # Regenerate header files after make-int-return-values patch to fix return
    # types of f2c functions.
    echo "Regenerating cython wrappers"
    cd scipy/linalg
    python _cython_wrapper_generators.py
    cd ../..

requirements:
  run:
    - numpy
    - CLAPACK

test:
  imports:
    - scipy
    - scipy.cluster
    - scipy.constants
    - scipy.fftpack
    - scipy.odr
    - scipy.sparse
    - scipy.interpolate
    - scipy.integrate
    - scipy.linalg
    - scipy.misc
    - scipy.ndimage
    - scipy.spatial
    - scipy.special