pipdeptree

pipdeptree is a command line utility for displaying the installed python packages in form of a dependency tree. It works for packages installed globally on a machine as well as in a virtualenv. Since pip freeze shows all dependencies as a flat list, finding out which are the top level packages and which packages do they depend on requires some effort. It's also tedious to resolve conflicting dependencies that could have been installed because older version of pip didn't have true dependency resolution¹. pipdeptree can help here by identifying conflicting dependencies installed in the environment.

To some extent, pipdeptree is inspired by the lein deps :tree command of Leiningen.

Installation

pip install pipdeptree

Running in virtualenvs

New in ver. 2.0.0

If you want to run pipdeptree in the context of a particular virtualenv, you can specify the --python option. Note that this capability has been recently added in version 2.0.0.

Alternatively, you may also install pipdeptree inside the virtualenv and then run it from there.

Usage and examples

To give you a brief idea, here is the output of pipdeptree compared with pip freeze:

$ pip freeze
Flask==0.10.1
itsdangerous==0.24
Jinja2==2.11.2
-e git+git@github.com:naiquevin/lookupy.git@cdbe30c160e1c29802df75e145ea4ad903c05386#egg=Lookupy
MarkupSafe==0.22
pipdeptree @ file:///private/tmp/pipdeptree-2.0.0b1-py3-none-any.whl
Werkzeug==0.11.2

And now see what pipdeptree outputs,

$ pipdeptree
Warning!!! Possibly conflicting dependencies found:
* Jinja2==2.11.2
 - MarkupSafe [required: >=0.23, installed: 0.22]
------------------------------------------------------------------------
Flask==0.10.1
  - itsdangerous [required: >=0.21, installed: 0.24]
  - Jinja2 [required: >=2.4, installed: 2.11.2]
    - MarkupSafe [required: >=0.23, installed: 0.22]
  - Werkzeug [required: >=0.7, installed: 0.11.2]
Lookupy==0.1
pipdeptree==2.0.0b1
  - pip [required: >=6.0.0, installed: 20.1.1]
setuptools==47.1.1
wheel==0.34.2

Is it possible to find out why a particular package is installed?

New in ver. 0.5.0

Yes, there's a --reverse (or simply -r) flag for this. To find out which packages depend on a particular package(s), it can be combined with --packages option as follows:

$ pipdeptree --reverse --packages itsdangerous,MarkupSafe
Warning!!! Possibly conflicting dependencies found:
* Jinja2==2.11.2
 - MarkupSafe [required: >=0.23, installed: 0.22]
------------------------------------------------------------------------
itsdangerous==0.24
  - Flask==0.10.1 [requires: itsdangerous>=0.21]
MarkupSafe==0.22
  - Jinja2==2.11.2 [requires: MarkupSafe>=0.23]
    - Flask==0.10.1 [requires: Jinja2>=2.4]

What's with the warning about conflicting dependencies?

As seen in the above output, pipdeptree by default warns about possible conflicting dependencies. Any package that's specified as a dependency of multiple packages with different versions is considered as a conflicting dependency. Conflicting dependencies are possible if older version of pip<=20.2 (without the new resolver²) was ever used to install dependencies at some point. The warning is printed to stderr instead of stdout and it can be completely silenced by specifying the -w silence or --warn silence option. On the other hand, it can be made mode strict with --warn fail, in which case the command will not only print the warnings to stderr but also exit with a non-zero status code. This is useful if you want to fit this tool into your CI pipeline.

Note: The --warn option is added in version 0.6.0. If you are using an older version, use --nowarn flag to silence the warnings.

Warnings about circular dependencies

In case any of the packages have circular dependencies (eg. package A depends on package B and package B depends on package A), then pipdeptree will print warnings about that as well.

$ pipdeptree --exclude pip,pipdeptree,setuptools,wheel
Warning!!! Cyclic dependencies found:
- CircularDependencyA => CircularDependencyB => CircularDependencyA
- CircularDependencyB => CircularDependencyA => CircularDependencyB
------------------------------------------------------------------------
wsgiref==0.1.2
argparse==1.2.1

Similar to the warnings about conflicting dependencies, these too are printed to stderr and can be controlled using the --warn option.

In the above example, you can also see --exclude option which is the opposite of --packages ie. these packages will be excluded from the output.

Using pipdeptree to write requirements.txt file

If you wish to track only top level packages in your requirements.txt file, it's possible by grep-ing³. only the top-level lines from the output,

$ pipdeptree --warn silence | grep -E '^\w+'
Flask==0.10.1
gnureadline==8.0.0
Lookupy==0.1
pipdeptree==2.0.0b1
setuptools==47.1.1
wheel==0.34.2

There is a problem here though - The output doesn't mention anything about Lookupy being installed as an editable package (refer to the output of pip freeze above) and information about its source is lost. To fix this, pipdeptree must be run with a -f or --freeze flag.

$ pipdeptree -f --warn silence | grep -E '^[a-zA-Z0-9\-]+'
Flask==0.10.1
gnureadline==8.0.0
-e git+git@github.com:naiquevin/lookupy.git@cdbe30c160e1c29802df75e145ea4ad903c05386#egg=Lookupy
pipdeptree @ file:///private/tmp/pipdeptree-2.0.0b1-py3-none-any.whl
setuptools==47.1.1
wheel==0.34.2

$ pipdeptree -f --warn silence | grep -E '^[a-zA-Z0-9\-]+' > requirements.txt

The freeze flag will not prefix child dependencies with hyphens, so you could dump the entire output of pipdeptree -f to the requirements.txt file thus making it human-friendly (due to indentations) as well as pip-friendly.

$ pipdeptree -f | tee locked-requirements.txt
Flask==0.10.1
  itsdangerous==0.24
  Jinja2==2.11.2
    MarkupSafe==0.23
  Werkzeug==0.11.2
gnureadline==8.0.0
-e git+git@github.com:naiquevin/lookupy.git@cdbe30c160e1c29802df75e145ea4ad903c05386#egg=Lookupy
pipdeptree @ file:///private/tmp/pipdeptree-2.0.0b1-py3-none-any.whl
  pip==20.1.1
setuptools==47.1.1
wheel==0.34.2

On confirming that there are no conflicting dependencies, you can even treat this as a "lock file" where all packages, including the transient dependencies will be pinned to their currently installed versions. Note that the locked-requirements.txt file could end up with duplicate entries. Although pip install wouldn't complain about that, you can avoid duplicate lines (at the cost of losing indentation) as follows,

$ pipdeptree -f | sed 's/ //g' | sort -u > locked-requirements.txt

Using pipdeptree with external tools

New in ver. 0.5.0

It's also possible to have pipdeptree output json representation of the dependency tree so that it may be used as input to other external tools.

$ pipdeptree --json

Note that --json will output a flat list of all packages with their immediate dependencies. This is not very useful in itself. To obtain nested json, use --json-tree

New in ver. 0.11.0

$ pipdeptree --json-tree

Visualizing the dependency graph

The dependency graph can also be visualized using GraphViz:

$ pipdeptree --graph-output dot > dependencies.dot
$ pipdeptree --graph-output pdf > dependencies.pdf
$ pipdeptree --graph-output png > dependencies.png
$ pipdeptree --graph-output svg > dependencies.svg

Note that graphviz is an optional dependency ie. required only if you want to use --graph-output. If the version of graphviz installed in the env is older than 0.18.1, then a warning will be displayed about upgrading graphviz. Support for older versions of graphviz will be dropped soon.

Since version 2.0.0b1, --package and --reverse flags are supported for all output formats ie. text, json, json-tree and graph.

In earlier versions, --json, --json-tree and --graph-output options override --package and --reverse.

Usage

% pipdeptree --help
usage: pipdeptree [-h] [-v] [-w [{silence,suppress,fail}]] [--python PYTHON] [-p P] [-e P] [-a] [-l | -u] [-f] [--encoding E] [-d D] [-r] [--license] [-j | --json-tree | --mermaid | --graph-output FMT]

Dependency tree of the installed python packages

options:
  -h, --help          show this help message and exit
  -v, --version       show program's version number and exit
  -w [{silence,suppress,fail}], --warn [{silence,suppress,fail}]
                      warning control: suppress will show warnings but return 0 whether or not they are present; silence will not show warnings at all and always return 0; fail will show warnings and return 1 if any are present (default:
                      suppress)

select:
  choose what to render

  --python PYTHON     Python interpreter to inspect (default: /usr/local/bin/python)
  -p P, --packages P  comma separated list of packages to show - wildcards are supported, like 'somepackage.*' (default: None)
  -e P, --exclude P   comma separated list of packages to not show - wildcards are supported, like 'somepackage.*'. (cannot combine with -p or -a) (default: None)
  -a, --all           list all deps at top level (default: False)
  -l, --local-only    if in a virtualenv that has global access do not show globally installed packages (default: False)
  -u, --user-only     only show installations in the user site dir (default: False)

render:
  choose how to render the dependency tree (by default will use text mode)

  -f, --freeze        print names so as to write freeze files (default: False)
  --encoding E        the encoding to use when writing to the output (default: utf-8)
  -d D, --depth D     limit the depth of the tree (text render only) (default: inf)
  -r, --reverse       render the dependency tree in the reverse fashion ie. the sub-dependencies are listed with the list of packages that need them under them (default: False)
  --license           list the license(s) of a package (text render only) (default: False)
  -j, --json          raw JSON - this will yield output that may be used by external tools (default: False)
  --json-tree         nested JSON - mimics the text format layout (default: False)
  --mermaid           https://mermaid.js.org flow diagram (default: False)
  --graph-output FMT  Graphviz rendering with the value being the graphviz output e.g.: dot, jpeg, pdf, png, svg (default: None)

Known issues

1. pipdeptree relies on the internal API of pip. I fully understand that it's a bad idea but it mostly works! On rare occasions, it breaks when a new version of pip is out with backward incompatible changes in internal API. So beware if you are using this tool in environments in which pip version is unpinned, specially automation or CD/CI pipelines.

Limitations & Alternatives

pipdeptree merely looks at the installed packages in the current environment using pip, constructs the tree, then outputs it in the specified format. If you want to generate the dependency tree without installing the packages, then you need a dependency resolver. You might want to check alternatives such as pipgrip or poetry.

License

MIT (See LICENSE)

Footnotes

---

1. pip version 20.3 has been released in Nov 2020 with the dependency resolver <https://blog.python.org/2020/11/pip-20-3-release-new-resolver.html>_ ↩︎

2. pip version 20.3 has been released in Nov 2020 with the dependency resolver <https://blog.python.org/2020/11/pip-20-3-release-new-resolver.html>_ ↩︎

3. If you are on windows (powershell) you can run pipdeptree --warn silence | Select-String -Pattern '^\w+' instead of grep ↩︎