diff --git a/projects/htslib/Dockerfile b/projects/htslib/Dockerfile new file mode 100644 index 000000000..1ad58da70 --- /dev/null +++ b/projects/htslib/Dockerfile @@ -0,0 +1,22 @@ +# Copyright 2018 Google Inc. +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. +# +################################################################################ + +FROM gcr.io/oss-fuzz-base/base-builder +MAINTAINER rmd@sanger.ac.uk +RUN apt-get update && apt-get install -y make autoconf automake zlib1g-dev libbz2-dev liblzma-dev libcurl4-gnutls-dev libssl-dev +RUN git clone --depth 1 https://github.com/samtools/htslib.git htslib +WORKDIR htslib +COPY build.sh $SRC/ diff --git a/projects/htslib/build.sh b/projects/htslib/build.sh new file mode 100755 index 000000000..a0bbdfd69 --- /dev/null +++ b/projects/htslib/build.sh @@ -0,0 +1,25 @@ +#!/bin/bash -eu +# Copyright 2018 Google Inc. +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. +# +################################################################################ + +# build project +autoconf +autoheader +./configure +make -j$(nproc) libhts.a test/fuzz/hts_open_fuzzer.o + +# build fuzzers +$CXX $CXXFLAGS -o "$OUT/hts_open_fuzzer" test/fuzz/hts_open_fuzzer.o $LIB_FUZZING_ENGINE libhts.a -lz -lbz2 -llzma -lcurl -lcrypto -lpthread diff --git a/projects/htslib/project.yaml b/projects/htslib/project.yaml new file mode 100644 index 000000000..f784ab172 --- /dev/null +++ b/projects/htslib/project.yaml @@ -0,0 +1,6 @@ +homepage: "https://www.htslib.org/" +primary_contact: "rmd@sanger.ac.uk" +auto_ccs: + - "aw7@sanger.ac.uk" + - "jkb@sanger.ac.uk" + - "vo2@sanger.ac.uk"