oss-fuzz/projects/rdkit/Dockerfile

45 lines
1.8 KiB
Docker
Raw Normal View History

2020-05-13 18:31:42 +00:00
# Copyright 2017 Google Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#
################################################################################
FROM gcr.io/oss-fuzz-base/base-builder
MAINTAINER greg.landrum@gmail.com
RUN apt-get update && apt-get install -y make wget cmake \
libeigen3-dev python3 libpython3-all-dev \
zlib1g-dev \
libbz2-dev
# Install latest cmake
RUN wget --quiet https://github.com/Kitware/CMake/releases/download/v3.14.5/cmake-3.14.5-Linux-x86_64.sh; \
chmod +x cmake-3.14.5-Linux-x86_64.sh; \
./cmake-3.14.5-Linux-x86_64.sh --skip-license --prefix="/usr/local"
# We're building `rdkit` using clang, but the boost package is built using gcc.
# For whatever reason, linking would fail.
# (Mismatch between libstdc++ and libc++ maybe?)
# It works if we build `rdkit` using gcc or build boost using clang instead.
# We've opted for building boost using clang.
WORKDIR /src
RUN wget --quiet https://sourceforge.net/projects/boost/files/boost/1.69.0/boost_1_69_0.tar.bz2
RUN tar xjf boost_1_69_0.tar.bz2
WORKDIR /src/boost_1_69_0
RUN ./bootstrap.sh --with-toolset=clang --with-libraries=serialization,system,iostreams,regex
RUN ./b2 -q -j2 toolset=clang cxxflags="-fPIC $CXXFLAGS $CXXFLAGS_EXTRA" link=static install
WORKDIR /src
RUN git clone --depth 1 https://github.com/rdkit/rdkit.git rdkit
WORKDIR rdkit
COPY build.sh $SRC/