889 lines
31 KiB
Python
889 lines
31 KiB
Python
# Copyright The PyTorch Lightning team.
|
|
#
|
|
# Licensed under the Apache License, Version 2.0 (the "License");
|
|
# you may not use this file except in compliance with the License.
|
|
# You may obtain a copy of the License at
|
|
#
|
|
# http://www.apache.org/licenses/LICENSE-2.0
|
|
#
|
|
# Unless required by applicable law or agreed to in writing, software
|
|
# distributed under the License is distributed on an "AS IS" BASIS,
|
|
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
|
# See the License for the specific language governing permissions and
|
|
# limitations under the License.
|
|
import os
|
|
import pickle
|
|
import platform
|
|
import re
|
|
from argparse import Namespace
|
|
from pathlib import Path
|
|
from unittest import mock
|
|
from unittest.mock import Mock
|
|
|
|
import cloudpickle
|
|
import pytest
|
|
import torch
|
|
import yaml
|
|
from omegaconf import Container, OmegaConf
|
|
|
|
import pytorch_lightning as pl
|
|
import tests.base.develop_utils as tutils
|
|
from pytorch_lightning import seed_everything, Trainer
|
|
from pytorch_lightning.callbacks import ModelCheckpoint
|
|
from pytorch_lightning.loggers import TensorBoardLogger
|
|
from pytorch_lightning.trainer.states import TrainerState
|
|
from pytorch_lightning.utilities.cloud_io import load as pl_load
|
|
from pytorch_lightning.utilities.exceptions import MisconfigurationException
|
|
from tests.base import BoringModel
|
|
|
|
|
|
class LogInTwoMethods(BoringModel):
|
|
def training_step(self, batch, batch_idx):
|
|
out = super().training_step(batch, batch_idx)
|
|
self.log('early_stop_on', out['loss'])
|
|
return out
|
|
|
|
def validation_epoch_end(self, outputs):
|
|
outs = torch.stack([x['x'] for x in outputs]).mean()
|
|
self.log('epoch', self.current_epoch, on_epoch=True)
|
|
self.log('val_acc', outs, on_epoch=True)
|
|
|
|
|
|
@mock.patch.dict(os.environ, {"PL_DEV_DEBUG": "1"})
|
|
@pytest.mark.parametrize('save_top_k', [-1])
|
|
def test_model_checkpoint_correct_score(tmpdir, save_top_k):
|
|
"""Test that when a model checkpoint is saved, it saves with the correct score appended to ckpt_path"""
|
|
tutils.reset_seed()
|
|
|
|
model = LogInTwoMethods()
|
|
|
|
filename = "{val_acc:.4f}-{epoch}"
|
|
|
|
checkpoint = ModelCheckpoint(dirpath=tmpdir, filename=filename, monitor='val_acc', save_top_k=save_top_k)
|
|
|
|
trainer = Trainer(default_root_dir=tmpdir, callbacks=[checkpoint], overfit_batches=0.20, max_epochs=2)
|
|
trainer.fit(model)
|
|
|
|
ckpt_files = list(Path(tmpdir).glob('*.ckpt'))
|
|
|
|
metrics = trainer.dev_debugger.logged_metrics
|
|
expected_filenames = {f'val_acc={metric["val_acc"]:.4f}-epoch={metric["epoch"]}.ckpt' for metric in metrics}
|
|
for ckpt_file in ckpt_files:
|
|
assert os.path.basename(ckpt_file) in expected_filenames
|
|
|
|
|
|
@pytest.mark.parametrize("save_top_k", [-1, 0, 1, 2])
|
|
def test_model_checkpoint_with_non_string_input(tmpdir, save_top_k):
|
|
"""Test that dirpath=None in checkpoint callback is valid and that ckpt_path is set correctly"""
|
|
tutils.reset_seed()
|
|
model = LogInTwoMethods()
|
|
|
|
checkpoint = ModelCheckpoint(monitor='early_stop_on', dirpath=None, filename='{epoch}', save_top_k=save_top_k)
|
|
max_epochs = 2
|
|
trainer = Trainer(
|
|
default_root_dir=tmpdir,
|
|
callbacks=[checkpoint],
|
|
overfit_batches=0.20,
|
|
max_epochs=max_epochs,
|
|
)
|
|
trainer.fit(model)
|
|
assert (
|
|
checkpoint.dirpath == tmpdir / trainer.logger.name / "version_0" / "checkpoints"
|
|
)
|
|
|
|
if save_top_k == -1:
|
|
ckpt_files = os.listdir(checkpoint.dirpath)
|
|
expected_ckpt_files = [f'epoch={i}.ckpt' for i in range(max_epochs)]
|
|
assert len(ckpt_files) == len(expected_ckpt_files) == max_epochs
|
|
assert set(ckpt_files) == set(expected_ckpt_files)
|
|
|
|
|
|
@pytest.mark.parametrize('save_top_k', [-1, 0, 1, 2])
|
|
def test_model_checkpoint_to_yaml(tmpdir, save_top_k):
|
|
""" Test that None in checkpoint callback is valid and that chkp_path is set correctly """
|
|
tutils.reset_seed()
|
|
model = LogInTwoMethods()
|
|
|
|
checkpoint = ModelCheckpoint(dirpath=tmpdir, monitor='early_stop_on', save_top_k=save_top_k)
|
|
|
|
trainer = Trainer(default_root_dir=tmpdir, callbacks=[checkpoint], overfit_batches=0.20, max_epochs=2)
|
|
trainer.fit(model)
|
|
|
|
path_yaml = os.path.join(tmpdir, 'best_k_models.yaml')
|
|
checkpoint.to_yaml(path_yaml)
|
|
d = yaml.full_load(open(path_yaml, 'r'))
|
|
best_k = {k: v for k, v in checkpoint.best_k_models.items()}
|
|
assert d == best_k
|
|
|
|
|
|
@pytest.mark.parametrize(
|
|
"logger_version,expected",
|
|
[(None, "version_0"), (1, "version_1"), ("awesome", "awesome")],
|
|
)
|
|
def test_model_checkpoint_path(tmpdir, logger_version, expected):
|
|
"""Test that "version_" prefix is only added when logger's version is an integer"""
|
|
tutils.reset_seed()
|
|
model = LogInTwoMethods()
|
|
logger = TensorBoardLogger(str(tmpdir), version=logger_version)
|
|
|
|
trainer = Trainer(
|
|
default_root_dir=tmpdir, overfit_batches=0.2, max_epochs=2, logger=logger
|
|
)
|
|
trainer.fit(model)
|
|
|
|
ckpt_version = Path(trainer.checkpoint_callback.dirpath).parent.name
|
|
assert ckpt_version == expected
|
|
|
|
|
|
def test_pickling(tmpdir):
|
|
ckpt = ModelCheckpoint(dirpath=tmpdir)
|
|
|
|
ckpt_pickled = pickle.dumps(ckpt)
|
|
ckpt_loaded = pickle.loads(ckpt_pickled)
|
|
assert vars(ckpt) == vars(ckpt_loaded)
|
|
|
|
ckpt_pickled = cloudpickle.dumps(ckpt)
|
|
ckpt_loaded = cloudpickle.loads(ckpt_pickled)
|
|
assert vars(ckpt) == vars(ckpt_loaded)
|
|
|
|
|
|
class ModelCheckpointTestInvocations(ModelCheckpoint):
|
|
# this class has to be defined outside the test function, otherwise we get pickle error
|
|
# due to the way ddp process is launched
|
|
|
|
def __init__(self, expected_count, *args, **kwargs):
|
|
super().__init__(*args, **kwargs)
|
|
self.expected_count = expected_count
|
|
self.on_save_checkpoint_count = 0
|
|
|
|
def on_train_start(self, trainer, pl_module):
|
|
torch.save = Mock(wraps=torch.save)
|
|
|
|
def on_save_checkpoint(self, trainer, pl_module):
|
|
# expect all ranks to run but only rank 0 will actually write the checkpoint file
|
|
super().on_save_checkpoint(trainer, pl_module)
|
|
self.on_save_checkpoint_count += 1
|
|
|
|
def on_train_end(self, trainer, pl_module):
|
|
super().on_train_end(trainer, pl_module)
|
|
assert self.best_model_path
|
|
assert self.best_model_score
|
|
assert self.on_save_checkpoint_count == self.expected_count
|
|
if trainer.is_global_zero:
|
|
assert torch.save.call_count == self.expected_count
|
|
else:
|
|
assert torch.save.call_count == 0
|
|
|
|
|
|
@pytest.mark.skipif(
|
|
platform.system() == "Windows",
|
|
reason="Distributed training is not supported on Windows",
|
|
)
|
|
def test_model_checkpoint_no_extraneous_invocations(tmpdir):
|
|
"""Test to ensure that the model callback saves the checkpoints only once in distributed mode."""
|
|
model = LogInTwoMethods()
|
|
num_epochs = 4
|
|
model_checkpoint = ModelCheckpointTestInvocations(monitor='early_stop_on', expected_count=num_epochs, save_top_k=-1)
|
|
trainer = Trainer(
|
|
accelerator="ddp_cpu",
|
|
num_processes=2,
|
|
default_root_dir=tmpdir,
|
|
callbacks=[model_checkpoint],
|
|
max_epochs=num_epochs,
|
|
)
|
|
trainer.fit(model)
|
|
assert trainer.state == TrainerState.FINISHED, f"Training failed with {trainer.state}"
|
|
|
|
|
|
def test_model_checkpoint_format_checkpoint_name(tmpdir):
|
|
# empty filename:
|
|
ckpt_name = ModelCheckpoint._format_checkpoint_name('', 3, 2, {})
|
|
assert ckpt_name == 'epoch=3-step=2'
|
|
|
|
ckpt_name = ModelCheckpoint._format_checkpoint_name(None, 3, 2, {}, prefix='test')
|
|
assert ckpt_name == 'test-epoch=3-step=2'
|
|
|
|
# no groups case:
|
|
ckpt_name = ModelCheckpoint._format_checkpoint_name('ckpt', 3, 2, {}, prefix='test')
|
|
assert ckpt_name == 'test-ckpt'
|
|
|
|
# no prefix
|
|
ckpt_name = ModelCheckpoint._format_checkpoint_name('{epoch:03d}-{acc}', 3, 2, {'acc': 0.03})
|
|
assert ckpt_name == 'epoch=003-acc=0.03'
|
|
|
|
# prefix
|
|
char_org = ModelCheckpoint.CHECKPOINT_JOIN_CHAR
|
|
ModelCheckpoint.CHECKPOINT_JOIN_CHAR = '@'
|
|
ckpt_name = ModelCheckpoint._format_checkpoint_name('{epoch},{acc:.5f}', 3, 2, {'acc': 0.03}, prefix='test')
|
|
assert ckpt_name == 'test@epoch=3,acc=0.03000'
|
|
ModelCheckpoint.CHECKPOINT_JOIN_CHAR = char_org
|
|
|
|
# no dirpath set
|
|
ckpt_name = ModelCheckpoint(monitor='early_stop_on', dirpath=None).format_checkpoint_name(3, 2, {})
|
|
assert ckpt_name == 'epoch=3-step=2.ckpt'
|
|
ckpt_name = ModelCheckpoint(monitor='early_stop_on', dirpath='').format_checkpoint_name(5, 4, {})
|
|
assert ckpt_name == 'epoch=5-step=4.ckpt'
|
|
|
|
# CWD
|
|
ckpt_name = ModelCheckpoint(monitor='early_stop_on', dirpath='.').format_checkpoint_name(3, 4, {})
|
|
assert ckpt_name == str(Path('.').resolve() / 'epoch=3-step=4.ckpt')
|
|
|
|
# with version
|
|
ckpt_name = ModelCheckpoint(
|
|
monitor='early_stop_on', dirpath=tmpdir, filename='name', prefix='test'
|
|
).format_checkpoint_name(3, 2, {}, ver=3)
|
|
assert ckpt_name == tmpdir / 'test-name-v3.ckpt'
|
|
|
|
# using slashes
|
|
ckpt_name = ModelCheckpoint(
|
|
monitor='early_stop_on', dirpath=None, filename='{epoch}_{val/loss:.5f}'
|
|
).format_checkpoint_name(4, 3, {'val/loss': 0.03})
|
|
assert ckpt_name == 'epoch=4_val/loss=0.03000.ckpt'
|
|
|
|
|
|
class ModelCheckpointExtensionTest(ModelCheckpoint):
|
|
FILE_EXTENSION = '.tpkc'
|
|
|
|
|
|
def test_model_checkpoint_file_extension(tmpdir):
|
|
"""
|
|
Test ModelCheckpoint with different file extension.
|
|
"""
|
|
|
|
model = LogInTwoMethods()
|
|
model_checkpoint = ModelCheckpointExtensionTest(
|
|
monitor='early_stop_on',
|
|
dirpath=tmpdir,
|
|
save_top_k=1,
|
|
save_last=True,
|
|
)
|
|
trainer = Trainer(
|
|
default_root_dir=tmpdir,
|
|
callbacks=[model_checkpoint],
|
|
max_steps=1,
|
|
logger=False,
|
|
)
|
|
trainer.fit(model)
|
|
|
|
expected = ['epoch=0-step=0.tpkc', 'last.tpkc']
|
|
assert set(expected) == set(os.listdir(tmpdir))
|
|
|
|
|
|
def test_model_checkpoint_save_last(tmpdir):
|
|
"""Tests that save_last produces only one last checkpoint."""
|
|
seed_everything()
|
|
model = LogInTwoMethods()
|
|
epochs = 3
|
|
ModelCheckpoint.CHECKPOINT_NAME_LAST = 'last-{epoch}'
|
|
model_checkpoint = ModelCheckpoint(monitor='early_stop_on', dirpath=tmpdir, save_top_k=-1, save_last=True)
|
|
trainer = Trainer(
|
|
default_root_dir=tmpdir,
|
|
callbacks=[model_checkpoint],
|
|
max_epochs=epochs,
|
|
limit_train_batches=10,
|
|
limit_val_batches=10,
|
|
logger=False,
|
|
)
|
|
trainer.fit(model)
|
|
last_filename = model_checkpoint._format_checkpoint_name(
|
|
ModelCheckpoint.CHECKPOINT_NAME_LAST, trainer.current_epoch, trainer.global_step, {}
|
|
)
|
|
last_filename = last_filename + '.ckpt'
|
|
assert str(tmpdir / last_filename) == model_checkpoint.last_model_path
|
|
assert set(os.listdir(tmpdir)) == set(
|
|
[f"epoch={i}-step={j}.ckpt" for i, j in zip(range(epochs), [9, 19, 29])] + [last_filename]
|
|
)
|
|
|
|
ModelCheckpoint.CHECKPOINT_NAME_LAST = 'last'
|
|
|
|
|
|
def test_invalid_top_k(tmpdir):
|
|
""" Make sure that a MisconfigurationException is raised for a negative save_top_k argument. """
|
|
with pytest.raises(MisconfigurationException, match=r'.*Must be None or >= -1'):
|
|
ModelCheckpoint(dirpath=tmpdir, save_top_k=-3)
|
|
|
|
|
|
def test_none_monitor_top_k(tmpdir):
|
|
""" Test that a warning appears for positive top_k with monitor=None. """
|
|
with pytest.raises(
|
|
MisconfigurationException, match=r'ModelCheckpoint\(save_top_k=3, monitor=None\) is not a valid*'
|
|
):
|
|
ModelCheckpoint(dirpath=tmpdir, save_top_k=3)
|
|
# These should not fail
|
|
ModelCheckpoint(dirpath=tmpdir, save_top_k=None)
|
|
ModelCheckpoint(dirpath=tmpdir, save_top_k=-1)
|
|
ModelCheckpoint(dirpath=tmpdir, save_top_k=0)
|
|
|
|
|
|
def test_none_monitor_save_last(tmpdir):
|
|
""" Test that a warning appears for save_last=True with monitor=None. """
|
|
with pytest.warns(
|
|
UserWarning, match=r'ModelCheckpoint\(save_last=True, monitor=None\) is a redundant.*'
|
|
):
|
|
ModelCheckpoint(dirpath=tmpdir, save_last=True)
|
|
# These should not fail
|
|
ModelCheckpoint(dirpath=tmpdir, save_last=None)
|
|
ModelCheckpoint(dirpath=tmpdir, save_last=False)
|
|
|
|
|
|
def test_model_checkpoint_none_monitor(tmpdir):
|
|
""" Test that it is possible to save all checkpoints when monitor=None. """
|
|
seed_everything()
|
|
model = LogInTwoMethods()
|
|
|
|
epochs = 2
|
|
checkpoint_callback = ModelCheckpoint(monitor=None, dirpath=tmpdir, save_top_k=-1)
|
|
trainer = Trainer(
|
|
default_root_dir=tmpdir,
|
|
callbacks=[checkpoint_callback],
|
|
limit_train_batches=10,
|
|
limit_val_batches=10,
|
|
max_epochs=epochs,
|
|
logger=False,
|
|
)
|
|
trainer.fit(model)
|
|
|
|
# these should not be set if monitor is None
|
|
assert checkpoint_callback.monitor is None
|
|
assert checkpoint_callback.best_model_path == checkpoint_callback.last_model_path == tmpdir / 'epoch=1-step=19.ckpt'
|
|
assert checkpoint_callback.best_model_score is None
|
|
assert checkpoint_callback.best_k_models == {}
|
|
assert checkpoint_callback.kth_best_model_path == ''
|
|
|
|
# check that the correct ckpts were created
|
|
expected = [f'epoch={i}-step={j}.ckpt' for i, j in zip(range(epochs), [9, 19])]
|
|
assert set(os.listdir(tmpdir)) == set(expected)
|
|
|
|
|
|
@pytest.mark.parametrize("period", list(range(4)))
|
|
def test_model_checkpoint_period(tmpdir, period):
|
|
model = LogInTwoMethods()
|
|
epochs = 5
|
|
checkpoint_callback = ModelCheckpoint(dirpath=tmpdir, filename='{epoch}', save_top_k=-1, period=period)
|
|
trainer = Trainer(
|
|
default_root_dir=tmpdir,
|
|
callbacks=[checkpoint_callback],
|
|
max_epochs=epochs,
|
|
limit_train_batches=0.1,
|
|
limit_val_batches=0.1,
|
|
val_check_interval=1.0,
|
|
logger=False,
|
|
)
|
|
trainer.fit(model)
|
|
|
|
# check that the correct ckpts were created
|
|
expected = [f'epoch={e}.ckpt' for e in range(epochs) if not (e + 1) % period] if period > 0 else []
|
|
assert set(os.listdir(tmpdir)) == set(expected)
|
|
|
|
|
|
def test_model_checkpoint_topk_zero(tmpdir):
|
|
""" Test that no checkpoints are saved when save_top_k=0. """
|
|
model = LogInTwoMethods()
|
|
checkpoint_callback = ModelCheckpoint(dirpath=tmpdir, save_top_k=0)
|
|
trainer = Trainer(
|
|
default_root_dir=tmpdir,
|
|
callbacks=[checkpoint_callback],
|
|
max_epochs=2,
|
|
logger=False,
|
|
)
|
|
trainer.fit(model)
|
|
# these should not be set if monitor is None
|
|
assert checkpoint_callback.monitor is None
|
|
assert checkpoint_callback.best_model_path == ''
|
|
assert checkpoint_callback.best_model_score is None
|
|
assert checkpoint_callback.best_k_models == {}
|
|
assert checkpoint_callback.kth_best_model_path == ''
|
|
# check that no ckpts were created
|
|
assert len(os.listdir(tmpdir)) == 0
|
|
|
|
|
|
def test_model_checkpoint_topk_all(tmpdir):
|
|
""" Test that save_top_k=-1 tracks the best models when monitor key is provided. """
|
|
seed_everything(1000)
|
|
epochs = 3
|
|
|
|
class CustomModel(LogInTwoMethods):
|
|
def validation_epoch_end(self, outputs):
|
|
return {'epoch': self.current_epoch}
|
|
|
|
model = CustomModel()
|
|
checkpoint_callback = ModelCheckpoint(
|
|
dirpath=tmpdir,
|
|
filename="{epoch}",
|
|
monitor="epoch",
|
|
mode='max',
|
|
save_top_k=-1,
|
|
)
|
|
trainer = Trainer(
|
|
default_root_dir=tmpdir,
|
|
callbacks=[checkpoint_callback],
|
|
max_epochs=epochs,
|
|
logger=False,
|
|
val_check_interval=1.0,
|
|
)
|
|
trainer.fit(model)
|
|
|
|
assert checkpoint_callback.monitor == 'epoch'
|
|
assert checkpoint_callback.best_model_path == tmpdir / "epoch=2.ckpt"
|
|
assert checkpoint_callback.best_model_score == epochs - 1
|
|
assert len(os.listdir(tmpdir)) == len(checkpoint_callback.best_k_models) == epochs
|
|
assert set(checkpoint_callback.best_k_models.keys()) == set(str(tmpdir / f"epoch={i}.ckpt") for i in range(epochs))
|
|
assert checkpoint_callback.kth_best_model_path == tmpdir / 'epoch=0.ckpt'
|
|
|
|
|
|
def test_ckpt_metric_names(tmpdir):
|
|
model = LogInTwoMethods()
|
|
|
|
trainer = Trainer(
|
|
default_root_dir=tmpdir,
|
|
max_epochs=1,
|
|
gradient_clip_val=1.0,
|
|
overfit_batches=0.20,
|
|
progress_bar_refresh_rate=0,
|
|
limit_train_batches=0.01,
|
|
limit_val_batches=0.01,
|
|
callbacks=[ModelCheckpoint(monitor='early_stop_on', dirpath=tmpdir, filename="{val_loss:.2f}")],
|
|
)
|
|
|
|
trainer.fit(model)
|
|
|
|
# make sure the checkpoint we saved has the metric in the name
|
|
ckpts = os.listdir(tmpdir)
|
|
ckpts = [x for x in ckpts if "val_loss" in x]
|
|
assert len(ckpts) == 1
|
|
val = re.sub("[^0-9.]", "", ckpts[0])
|
|
assert len(val) > 3
|
|
|
|
|
|
@mock.patch.dict(os.environ, {"PL_DEV_DEBUG": "1"})
|
|
def test_default_checkpoint_behavior(tmpdir):
|
|
seed_everything(1234)
|
|
os.environ['PL_DEV_DEBUG'] = '1'
|
|
|
|
model = LogInTwoMethods()
|
|
trainer = Trainer(
|
|
default_root_dir=tmpdir,
|
|
max_epochs=3,
|
|
progress_bar_refresh_rate=0,
|
|
limit_train_batches=5,
|
|
limit_val_batches=5,
|
|
)
|
|
|
|
trainer.fit(model)
|
|
results = trainer.test()
|
|
|
|
assert len(results) == 1
|
|
assert len(trainer.dev_debugger.checkpoint_callback_history) == 3
|
|
|
|
# make sure the checkpoint we saved has the metric in the name
|
|
ckpts = os.listdir(os.path.join(tmpdir, 'lightning_logs', 'version_0', 'checkpoints'))
|
|
assert len(ckpts) == 1
|
|
assert ckpts[0] == 'epoch=2-step=14.ckpt'
|
|
|
|
|
|
@pytest.mark.parametrize('max_epochs', [1, 2])
|
|
@pytest.mark.parametrize('should_validate', [True, False])
|
|
@pytest.mark.parametrize('save_last', [True, False])
|
|
def test_model_checkpoint_save_last_warning(tmpdir, caplog, max_epochs, should_validate, save_last):
|
|
"""Tests 'Saving latest checkpoint...' log"""
|
|
model = LogInTwoMethods()
|
|
if not should_validate:
|
|
model.validation_step = None
|
|
trainer = Trainer(
|
|
default_root_dir=tmpdir,
|
|
callbacks=[ModelCheckpoint(monitor='early_stop_on', dirpath=tmpdir,
|
|
save_top_k=0, save_last=save_last)],
|
|
max_epochs=max_epochs,
|
|
)
|
|
trainer.fit(model)
|
|
assert caplog.messages.count('Saving latest checkpoint...') == save_last
|
|
|
|
|
|
def test_model_checkpoint_save_last_checkpoint_contents(tmpdir):
|
|
""" Tests that the save_last checkpoint contains the latest information. """
|
|
seed_everything(100)
|
|
model = LogInTwoMethods()
|
|
num_epochs = 3
|
|
model_checkpoint = ModelCheckpoint(
|
|
monitor='early_stop_on', dirpath=tmpdir, filename="{epoch}", save_top_k=num_epochs, save_last=True
|
|
)
|
|
trainer = Trainer(
|
|
default_root_dir=tmpdir,
|
|
callbacks=[model_checkpoint],
|
|
max_epochs=num_epochs,
|
|
)
|
|
trainer.fit(model)
|
|
|
|
path_last_epoch = str(tmpdir / f"epoch={num_epochs - 1}.ckpt")
|
|
path_last = str(tmpdir / "last.ckpt")
|
|
assert path_last == model_checkpoint.last_model_path
|
|
assert os.path.isfile(path_last_epoch)
|
|
|
|
ckpt_last_epoch = torch.load(path_last_epoch)
|
|
ckpt_last = torch.load(path_last)
|
|
assert all(ckpt_last_epoch[k] == ckpt_last[k] for k in ("epoch", "global_step"))
|
|
|
|
ch_type = type(model_checkpoint)
|
|
assert ckpt_last["callbacks"][ch_type] == ckpt_last_epoch["callbacks"][ch_type]
|
|
|
|
# it is easier to load the model objects than to iterate over the raw dict of tensors
|
|
model_last_epoch = LogInTwoMethods.load_from_checkpoint(path_last_epoch)
|
|
model_last = LogInTwoMethods.load_from_checkpoint(
|
|
model_checkpoint.last_model_path
|
|
)
|
|
for w0, w1 in zip(model_last_epoch.parameters(), model_last.parameters()):
|
|
assert w0.eq(w1).all()
|
|
|
|
|
|
@mock.patch.dict(os.environ, {"PL_DEV_DEBUG": "1"})
|
|
@pytest.mark.parametrize('mode', ['min', 'max'])
|
|
def test_checkpointing_with_nan_as_first(tmpdir, mode):
|
|
monitor = [float('nan')]
|
|
monitor += [5, 7, 8] if mode == 'max' else [8, 7, 5]
|
|
|
|
class CurrentModel(LogInTwoMethods):
|
|
def validation_epoch_end(self, outputs):
|
|
val_loss = monitor[self.current_epoch]
|
|
self.log('abc', val_loss)
|
|
|
|
model = CurrentModel()
|
|
|
|
trainer = Trainer(
|
|
callbacks=[ModelCheckpoint(monitor='abc', mode=mode, save_top_k=1, dirpath=tmpdir)],
|
|
default_root_dir=tmpdir,
|
|
val_check_interval=1.0,
|
|
max_epochs=len(monitor),
|
|
)
|
|
trainer.fit(model)
|
|
|
|
# check that last one is also the best one
|
|
assert trainer.dev_debugger.checkpoint_callback_history[-1]['epoch'] == len(monitor) - 1
|
|
|
|
|
|
@mock.patch.dict(os.environ, {"PL_DEV_DEBUG": "1"})
|
|
def test_checkpoint_repeated_strategy(tmpdir):
|
|
"""
|
|
This test validates that the checkpoint can be called when provided to callbacks list
|
|
"""
|
|
checkpoint_callback = ModelCheckpoint(monitor='val_loss', dirpath=tmpdir, filename="{epoch:02d}")
|
|
|
|
class ExtendedBoringModel(BoringModel):
|
|
def validation_step(self, batch, batch_idx):
|
|
output = self.layer(batch)
|
|
loss = self.loss(batch, output)
|
|
return {"val_loss": loss}
|
|
|
|
model = ExtendedBoringModel()
|
|
model.validation_epoch_end = None
|
|
trainer = Trainer(
|
|
max_epochs=1,
|
|
limit_train_batches=2,
|
|
limit_val_batches=2,
|
|
limit_test_batches=2,
|
|
callbacks=[checkpoint_callback],
|
|
weights_summary=None,
|
|
progress_bar_refresh_rate=0,
|
|
)
|
|
trainer.fit(model)
|
|
assert os.listdir(tmpdir) == ['epoch=00.ckpt']
|
|
|
|
for idx in range(4):
|
|
# load from checkpoint
|
|
model = LogInTwoMethods.load_from_checkpoint(checkpoint_callback.best_model_path)
|
|
trainer = pl.Trainer(
|
|
default_root_dir=tmpdir,
|
|
max_epochs=1,
|
|
limit_train_batches=2,
|
|
limit_val_batches=2,
|
|
limit_test_batches=2,
|
|
resume_from_checkpoint=checkpoint_callback.best_model_path,
|
|
weights_summary=None,
|
|
progress_bar_refresh_rate=0,
|
|
)
|
|
trainer.fit(model)
|
|
trainer.test(model, verbose=False)
|
|
assert set(os.listdir(tmpdir)) == {'epoch=00.ckpt', 'lightning_logs'}
|
|
assert set(os.listdir(tmpdir.join("lightning_logs"))) == {f'version_{i}' for i in range(4)}
|
|
|
|
|
|
@mock.patch.dict(os.environ, {"PL_DEV_DEBUG": "1"})
|
|
def test_checkpoint_repeated_strategy_extended(tmpdir):
|
|
"""
|
|
This test validates checkpoint can be called several times without
|
|
increasing internally its global step if nothing run.
|
|
"""
|
|
|
|
class ExtendedBoringModel(BoringModel):
|
|
def validation_step(self, batch, batch_idx):
|
|
output = self.layer(batch)
|
|
loss = self.loss(batch, output)
|
|
return {"val_loss": loss}
|
|
|
|
def validation_epoch_end(self, *_):
|
|
...
|
|
|
|
def assert_trainer_init(trainer):
|
|
assert not trainer.checkpoint_connector.has_trained
|
|
assert trainer.global_step == 0
|
|
assert trainer.current_epoch == 0
|
|
|
|
def get_last_checkpoint(ckpt_dir):
|
|
last = ckpt_dir.listdir(sort=True)[-1]
|
|
return str(last)
|
|
|
|
def assert_checkpoint_content(ckpt_dir):
|
|
chk = pl_load(get_last_checkpoint(ckpt_dir))
|
|
assert chk["epoch"] == epochs
|
|
assert chk["global_step"] == 4
|
|
|
|
def assert_checkpoint_log_dir(idx):
|
|
lightning_logs = tmpdir / 'lightning_logs'
|
|
actual = [d.basename for d in lightning_logs.listdir(sort=True)]
|
|
assert actual == [f'version_{i}' for i in range(idx + 1)]
|
|
assert len(ckpt_dir.listdir()) == epochs
|
|
|
|
ckpt_dir = tmpdir / 'checkpoints'
|
|
checkpoint_cb = ModelCheckpoint(dirpath=ckpt_dir, save_top_k=-1)
|
|
epochs = 2
|
|
limit_train_batches = 2
|
|
trainer_config = dict(
|
|
default_root_dir=tmpdir,
|
|
max_epochs=epochs,
|
|
limit_train_batches=limit_train_batches,
|
|
limit_val_batches=3,
|
|
limit_test_batches=4,
|
|
callbacks=[checkpoint_cb],
|
|
)
|
|
trainer = pl.Trainer(**trainer_config)
|
|
assert_trainer_init(trainer)
|
|
|
|
model = ExtendedBoringModel()
|
|
trainer.fit(model)
|
|
assert trainer.checkpoint_connector.has_trained
|
|
assert trainer.global_step == epochs * limit_train_batches
|
|
assert trainer.current_epoch == epochs - 1
|
|
assert_checkpoint_log_dir(0)
|
|
assert_checkpoint_content(ckpt_dir)
|
|
|
|
trainer.test(model)
|
|
assert trainer.current_epoch == epochs - 1
|
|
|
|
for idx in range(1, 5):
|
|
chk = get_last_checkpoint(ckpt_dir)
|
|
assert_checkpoint_content(ckpt_dir)
|
|
|
|
# load from checkpoint
|
|
trainer_config["callbacks"] = [ModelCheckpoint(dirpath=ckpt_dir, save_top_k=-1)]
|
|
trainer = pl.Trainer(**trainer_config, resume_from_checkpoint=chk)
|
|
assert_trainer_init(trainer)
|
|
|
|
model = ExtendedBoringModel()
|
|
trainer.test(model)
|
|
assert not trainer.checkpoint_connector.has_trained
|
|
# resume_from_checkpoint is resumed when calling `.fit`
|
|
assert trainer.global_step == 0
|
|
assert trainer.current_epoch == 0
|
|
trainer.fit(model)
|
|
assert not trainer.checkpoint_connector.has_trained
|
|
assert trainer.global_step == epochs * limit_train_batches
|
|
assert trainer.current_epoch == epochs
|
|
assert_checkpoint_log_dir(idx)
|
|
|
|
|
|
def test_configure_model_checkpoint(tmpdir):
|
|
""" Test all valid and invalid ways a checkpoint callback can be passed to the Trainer. """
|
|
kwargs = dict(default_root_dir=tmpdir)
|
|
callback1 = ModelCheckpoint()
|
|
callback2 = ModelCheckpoint()
|
|
|
|
# no callbacks
|
|
trainer = Trainer(checkpoint_callback=False, callbacks=[], **kwargs)
|
|
assert not any(isinstance(c, ModelCheckpoint) for c in trainer.callbacks)
|
|
assert trainer.checkpoint_callback is None
|
|
|
|
# default configuration
|
|
trainer = Trainer(checkpoint_callback=True, callbacks=[], **kwargs)
|
|
assert len([c for c in trainer.callbacks if isinstance(c, ModelCheckpoint)]) == 1
|
|
assert isinstance(trainer.checkpoint_callback, ModelCheckpoint)
|
|
|
|
# custom callback passed to callbacks list, checkpoint_callback=True is ignored
|
|
trainer = Trainer(checkpoint_callback=True, callbacks=[callback1], **kwargs)
|
|
assert [c for c in trainer.callbacks if isinstance(c, ModelCheckpoint)] == [callback1]
|
|
assert trainer.checkpoint_callback == callback1
|
|
|
|
# multiple checkpoint callbacks
|
|
trainer = Trainer(callbacks=[callback1, callback2], **kwargs)
|
|
assert trainer.checkpoint_callback == callback1
|
|
assert trainer.checkpoint_callbacks == [callback1, callback2]
|
|
|
|
with pytest.warns(DeprecationWarning, match='will no longer be supported in v1.3'):
|
|
trainer = Trainer(checkpoint_callback=callback1, **kwargs)
|
|
assert [c for c in trainer.callbacks if isinstance(c, ModelCheckpoint)] == [callback1]
|
|
assert trainer.checkpoint_callback == callback1
|
|
|
|
with pytest.warns(DeprecationWarning, match="will no longer be supported in v1.3"):
|
|
trainer = Trainer(checkpoint_callback=callback1, callbacks=[callback2], **kwargs)
|
|
assert trainer.checkpoint_callback == callback2
|
|
assert trainer.checkpoint_callbacks == [callback2, callback1]
|
|
|
|
with pytest.raises(MisconfigurationException, match="checkpoint_callback=False but found ModelCheckpoint"):
|
|
Trainer(checkpoint_callback=False, callbacks=[callback1], **kwargs)
|
|
|
|
|
|
def test_val_check_interval_checkpoint_files(tmpdir):
|
|
""" Test correct checkpoint naming when validating/checkpointing multiple times per epoch. """
|
|
model = LogInTwoMethods()
|
|
model_checkpoint = ModelCheckpoint(
|
|
dirpath=tmpdir,
|
|
save_top_k=-1,
|
|
monitor="val_acc",
|
|
mode="max",
|
|
verbose=True
|
|
)
|
|
trainer = Trainer(
|
|
default_root_dir=tmpdir,
|
|
val_check_interval=0.2,
|
|
max_epochs=1,
|
|
limit_train_batches=10,
|
|
callbacks=[model_checkpoint]
|
|
)
|
|
trainer.fit(model)
|
|
files = sorted([p.name for p in Path(tmpdir).glob("*.ckpt")])
|
|
assert files == [f"epoch=0-step={s}.ckpt" for s in [1, 3, 5, 7, 9]]
|
|
|
|
|
|
def test_current_score(tmpdir):
|
|
""" Check that the current_score value is correct and was saved """
|
|
class TestModel(BoringModel):
|
|
def training_step(self, *args):
|
|
self.log("foo", (self.current_epoch + 1) / 10)
|
|
return super().training_step(*args)
|
|
|
|
model_checkpoint = ModelCheckpoint(
|
|
dirpath=tmpdir,
|
|
save_top_k=3,
|
|
monitor="foo",
|
|
mode="min",
|
|
)
|
|
trainer = Trainer(
|
|
default_root_dir=tmpdir,
|
|
max_epochs=3,
|
|
limit_train_batches=1,
|
|
limit_val_batches=1,
|
|
callbacks=[model_checkpoint],
|
|
logger=False,
|
|
weights_summary=None,
|
|
progress_bar_refresh_rate=0,
|
|
)
|
|
trainer.fit(TestModel())
|
|
assert model_checkpoint.current_score == 0.3
|
|
ckpts = [torch.load(str(ckpt)) for ckpt in tmpdir.listdir()]
|
|
ckpts = [ckpt["callbacks"][type(model_checkpoint)] for ckpt in ckpts]
|
|
assert sorted(ckpt["current_score"] for ckpt in ckpts) == [0.1, 0.2, 0.3]
|
|
|
|
|
|
@pytest.mark.parametrize("mode", ["min", "max"])
|
|
def test_current_score_when_nan(tmpdir, mode):
|
|
""" Check that ModelCheckpoint handles NaN values correctly """
|
|
class TestModel(BoringModel):
|
|
def training_step(self, *args):
|
|
self.log("foo", float("nan"))
|
|
return super().training_step(*args)
|
|
|
|
model_checkpoint = ModelCheckpoint(
|
|
dirpath=tmpdir,
|
|
save_top_k=1,
|
|
monitor="foo",
|
|
mode=mode,
|
|
)
|
|
trainer = Trainer(
|
|
default_root_dir=tmpdir,
|
|
limit_train_batches=1,
|
|
limit_val_batches=1,
|
|
callbacks=[model_checkpoint],
|
|
logger=False,
|
|
weights_summary=None,
|
|
progress_bar_refresh_rate=0,
|
|
)
|
|
trainer.fit(TestModel())
|
|
expected = float("inf" if mode == "min" else "-inf")
|
|
assert model_checkpoint.best_model_score == expected
|
|
assert model_checkpoint.current_score == expected
|
|
|
|
|
|
@pytest.mark.parametrize("hparams_type", [dict, Container])
|
|
def test_hparams_type(tmpdir, hparams_type):
|
|
class TestModel(BoringModel):
|
|
def __init__(self, hparams):
|
|
super().__init__()
|
|
self.save_hyperparameters(hparams)
|
|
|
|
model_checkpoint = ModelCheckpoint(
|
|
dirpath=tmpdir,
|
|
save_top_k=1,
|
|
monitor="foo",
|
|
)
|
|
trainer = Trainer(
|
|
default_root_dir=tmpdir,
|
|
limit_train_batches=1,
|
|
limit_val_batches=1,
|
|
callbacks=[model_checkpoint],
|
|
logger=False,
|
|
weights_summary=None,
|
|
progress_bar_refresh_rate=0,
|
|
)
|
|
hp = {"test_hp_0": 1, "test_hp_1": 2}
|
|
hp = OmegaConf.create(hp) if hparams_type == Container else Namespace(**hp)
|
|
model = TestModel(hp)
|
|
trainer.fit(model)
|
|
ckpt = trainer.checkpoint_connector.dump_checkpoint()
|
|
if hparams_type == Container:
|
|
assert isinstance(ckpt[model.CHECKPOINT_HYPER_PARAMS_KEY], hparams_type)
|
|
else:
|
|
# make sure it's not AttributeDict
|
|
assert type(ckpt[model.CHECKPOINT_HYPER_PARAMS_KEY]) == hparams_type
|
|
|
|
|
|
@pytest.mark.parametrize('max_epochs', [3, 4])
|
|
@pytest.mark.parametrize(
|
|
'save_top_k, expected',
|
|
[
|
|
(1, ['curr_epoch.ckpt']),
|
|
(2, ['curr_epoch.ckpt', 'curr_epoch-v0.ckpt']),
|
|
]
|
|
)
|
|
def test_model_checkpoint_file_already_exists(tmpdir, max_epochs, save_top_k, expected):
|
|
"""
|
|
Test that version is added to filename if required and it already exists in dirpath.
|
|
"""
|
|
model_checkpoint = ModelCheckpoint(
|
|
dirpath=tmpdir,
|
|
filename='curr_epoch',
|
|
save_top_k=save_top_k,
|
|
monitor='epoch',
|
|
mode='max',
|
|
)
|
|
trainer = Trainer(
|
|
default_root_dir=tmpdir,
|
|
callbacks=[model_checkpoint],
|
|
max_epochs=max_epochs,
|
|
limit_train_batches=2,
|
|
limit_val_batches=2,
|
|
logger=None,
|
|
weights_summary=None,
|
|
progress_bar_refresh_rate=0,
|
|
)
|
|
|
|
model = BoringModel()
|
|
trainer.fit(model)
|
|
ckpt_files = os.listdir(tmpdir)
|
|
assert set(ckpt_files) == set(expected)
|
|
|
|
epochs_in_ckpt_files = [pl_load(os.path.join(tmpdir, f))['epoch'] - 1 for f in ckpt_files]
|
|
assert sorted(epochs_in_ckpt_files) == list(range(max_epochs - save_top_k, max_epochs))
|
|
|
|
|
|
def test_model_checkpoint_mode_options():
|
|
with pytest.raises(MisconfigurationException, match="`mode` can be auto, .* got unknown_option"):
|
|
ModelCheckpoint(mode="unknown_option")
|