# Copyright The PyTorch Lightning team. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. """ Model Checkpointing =================== Automatically save model checkpoints during training. """ import os import re import yaml from copy import deepcopy from typing import Any, Dict, Optional, Union from pathlib import Path import numpy as np import torch from pytorch_lightning import _logger as log from pytorch_lightning.callbacks.base import Callback from pytorch_lightning.utilities import rank_zero_only, rank_zero_warn, rank_zero_info from pytorch_lightning.utilities.cloud_io import get_filesystem from pytorch_lightning.utilities.exceptions import MisconfigurationException class ModelCheckpoint(Callback): r""" Save the model after every epoch by monitoring a quantity. After training finishes, use :attr:`best_model_path` to retrieve the path to the best checkpoint file and :attr:`best_model_score` to retrieve its score. Args: filepath: path to save the model file. Can contain named formatting options to be auto-filled. Example:: # custom path # saves a file like: my/path/epoch=0.ckpt >>> checkpoint_callback = ModelCheckpoint('my/path/') # save any arbitrary metrics like `val_loss`, etc. in name # saves a file like: my/path/epoch=2-val_loss=0.02-other_metric=0.03.ckpt >>> checkpoint_callback = ModelCheckpoint( ... filepath='my/path/{epoch}-{val_loss:.2f}-{other_metric:.2f}' ... ) By default, filepath is `None` and will be set at runtime to the location specified by :class:`~pytorch_lightning.trainer.trainer.Trainer`'s :paramref:`~pytorch_lightning.trainer.trainer.Trainer.default_root_dir` or :paramref:`~pytorch_lightning.trainer.trainer.Trainer.weights_save_path` arguments, and if the Trainer uses a logger, the path will also contain logger name and version. monitor: quantity to monitor. By default it is None which saves a checkpoint only for the last epoch verbose: verbosity mode. Default: ``False``. save_last: When `True`, always saves the model at the end of the epoch to a file `last.ckpt`. Default: ``None``. save_top_k: if ``save_top_k == k``, the best k models according to the quantity monitored will be saved. if ``save_top_k == 0``, no models are saved. if ``save_top_k == -1``, all models are saved. Please note that the monitors are checked every `period` epochs. if ``save_top_k >= 2`` and the callback is called multiple times inside an epoch, the name of the saved file will be appended with a version count starting with `v0`. mode: one of {auto, min, max}. If ``save_top_k != 0``, the decision to overwrite the current save file is made based on either the maximization or the minimization of the monitored quantity. For `val_acc`, this should be `max`, for `val_loss` this should be `min`, etc. In `auto` mode, the direction is automatically inferred from the name of the monitored quantity. save_weights_only: if ``True``, then only the model's weights will be saved (``model.save_weights(filepath)``), else the full model is saved (``model.save(filepath)``). period: Interval (number of epochs) between checkpoints. Example:: >>> from pytorch_lightning import Trainer >>> from pytorch_lightning.callbacks import ModelCheckpoint # saves checkpoints to 'my/path/' at every epoch >>> checkpoint_callback = ModelCheckpoint(filepath='my/path/') >>> trainer = Trainer(checkpoint_callback=checkpoint_callback) # save epoch and val_loss in name # saves a file like: my/path/sample-mnist-epoch=02-val_loss=0.32.ckpt >>> checkpoint_callback = ModelCheckpoint(monitor='val_loss', ... filepath='my/path/sample-mnist-{epoch:02d}-{val_loss:.2f}' ... ) # retrieve the best checkpoint after training checkpoint_callback = ModelCheckpoint(filepath='my/path/') trainer = Trainer(checkpoint_callback=checkpoint_callback) model = ... trainer.fit(model) checkpoint_callback.best_model_path """ CHECKPOINT_JOIN_CHAR = "-" CHECKPOINT_NAME_LAST = "last" CHECKPOINT_STATE_BEST_SCORE = "checkpoint_callback_best_model_score" CHECKPOINT_STATE_BEST_PATH = "checkpoint_callback_best_model_path" def __init__( self, filepath: Optional[str] = None, monitor: Optional[str] = None, verbose: bool = False, save_last: Optional[bool] = None, save_top_k: Optional[int] = None, save_weights_only: bool = False, mode: str = "auto", period: int = 1, prefix: str = "", ): super().__init__() self.monitor = monitor self.verbose = verbose self.save_last = save_last self.save_top_k = save_top_k self.save_weights_only = save_weights_only self.period = period self.last_global_step_saved = -1 self.prefix = prefix self.best_k_models = {} self.kth_best_model_path = "" self.best_model_score = 0 self.best_model_path = "" self.last_model_path = "" self.save_function = None self.warned_result_obj = False if save_top_k is None and monitor is not None: self.save_top_k = 1 self.__init_monitor_mode(monitor, mode) self.__init_ckpt_dir(filepath, save_top_k) self.__validate_init_configuration() def on_pretrain_routine_start(self, trainer, pl_module): """ When pretrain routine starts we build the ckpt dir on the fly """ self.__resolve_ckpt_dir(trainer, pl_module) def on_validation_end(self, trainer, pl_module): """ checkpoints can be saved at the end of the val loop """ self.save_checkpoint(trainer, pl_module) def on_save_checkpoint(self, trainer, pl_module) -> Dict[str, Any]: return { "best_model_score": self.best_model_score, "best_model_path": self.best_model_path, } def on_load_checkpoint(self, checkpointed_state: Dict[str, Any]): self.best_model_score = checkpointed_state["best_model_score"] self.best_model_path = checkpointed_state["best_model_path"] def save_checkpoint(self, trainer, pl_module): """ Performs the main logic around saving a checkpoint. This method runs on all ranks, it is the responsibility of `self.save_function` to handle correct behaviour in distributed training, i.e., saving only on rank 0. """ epoch = trainer.current_epoch global_step = trainer.global_step if ( self.save_top_k == 0 # no models are saved or self.period < 1 # no models are saved or (epoch + 1) % self.period # skip epoch or trainer.running_sanity_check # don't save anything during sanity check or self.last_global_step_saved == global_step # already saved at the last step ): return self._add_backward_monitor_support(trainer) self._validate_monitor_key(trainer) # track epoch when ckpt was last checked self.last_global_step_saved = global_step # what can be monitored monitor_candidates = self._monitor_candidates(trainer) # ie: path/val_loss=0.5.ckpt filepath = self._get_metric_interpolated_filepath_name(epoch, monitor_candidates) # callback supports multiple simultaneous modes # here we call each mode sequentially # Mode 1: save all checkpoints OR only the top k if self.save_top_k: self._save_top_k_checkpoints(monitor_candidates, trainer, pl_module, epoch, filepath) # Mode 2: save the last checkpoint self._save_last_checkpoint(trainer, pl_module, epoch, monitor_candidates, filepath) def __validate_init_configuration(self): if self.save_top_k is not None and self.save_top_k < -1: raise MisconfigurationException( f'Invalid value for save_top_k={self.save_top_k}. Must be None or >= -1' ) if self.monitor is None: # None: save last epoch, -1: save all epochs, 0: nothing is saved if self.save_top_k not in [None, -1, 0]: raise MisconfigurationException( f'ModelCheckpoint(save_top_k={self.save_top_k}, monitor=None) is not a valid' ' configuration. No quantity for top_k to track.' ) if self.save_last: raise MisconfigurationException( 'ModelCheckpoint(save_last=True, monitor=None) is not a valid configuration.' ' You can save the last checkpoint with ModelCheckpoint(save_top_k=None, monitor=None)' ) def __init_ckpt_dir(self, filepath, save_top_k): self._fs = get_filesystem(filepath if filepath is not None else "") if ( save_top_k is not None and save_top_k > 0 and filepath is not None and self._fs.isdir(filepath) and len(self._fs.ls(filepath)) > 0 ): rank_zero_warn( f"Checkpoint directory {filepath} exists and is not empty with save_top_k={save_top_k}" " All files in this directory will be deleted when a checkpoint is saved!" ) if not filepath: # will be determined by trainer at runtime self.dirpath, self.filename = None, None else: if self._fs.isdir(filepath): self.dirpath, self.filename = filepath, None else: if self._fs.protocol == "file": # dont normalize remote paths filepath = os.path.realpath(filepath) self.dirpath, self.filename = os.path.split(filepath) def __init_monitor_mode(self, monitor, mode): torch_inf = torch.tensor(np.Inf) mode_dict = { "min": (torch_inf, "min"), "max": (-torch_inf, "max"), "auto": (-torch_inf, "max") if monitor is not None and ("acc" in monitor or monitor.startswith("fmeasure")) else (torch_inf, "min"), } if mode not in mode_dict: rank_zero_warn( f"ModelCheckpoint mode {mode} is unknown, fallback to auto mode", RuntimeWarning, ) mode = "auto" self.kth_value, self.mode = mode_dict[mode] @rank_zero_only def _del_model(self, filepath: str): if self._fs.exists(filepath): self._fs.rm(filepath) log.debug(f"Removed checkpoint: {filepath}") def _save_model(self, filepath: str, trainer, pl_module): # in debugging, track when we save checkpoints trainer.dev_debugger.track_checkpointing_history(filepath) # make paths if trainer.is_global_zero: self._fs.makedirs(os.path.dirname(filepath), exist_ok=True) # delegate the saving to the trainer if self.save_function is not None: self.save_function(filepath, self.save_weights_only) else: raise ValueError(".save_function() not set") def check_monitor_top_k(self, current) -> bool: if current is None: return False if self.save_top_k == -1: return True less_than_k_models = len(self.best_k_models) < self.save_top_k if less_than_k_models: return True if not isinstance(current, torch.Tensor): rank_zero_warn( f"{current} is supposed to be a `torch.Tensor`. Saving checkpoint may not work correctly." f" HINT: check the value of {self.monitor} in your validation loop", RuntimeWarning, ) current = torch.tensor(current) monitor_op = {"min": torch.lt, "max": torch.gt}[self.mode] return monitor_op(current, self.best_k_models[self.kth_best_model_path]).item() @classmethod def _format_checkpoint_name( cls, filename: Optional[str], epoch: int, metrics: Dict[str, Any], prefix: str = "", ) -> str: if not filename: # filename is not set, use default name filename = "{epoch}" # check and parse user passed keys in the string groups = re.findall(r"(\{.*?)[:\}]", filename) if len(groups) >= 0: metrics["epoch"] = epoch for group in groups: name = group[1:] filename = filename.replace(group, name + "={" + name) if name not in metrics: metrics[name] = 0 filename = filename.format(**metrics) return cls.CHECKPOINT_JOIN_CHAR.join([txt for txt in (prefix, filename) if txt]) def format_checkpoint_name( self, epoch: int, metrics: Dict[str, Any], ver: Optional[int] = None ) -> str: """Generate a filename according to the defined template. Example:: >>> tmpdir = os.path.dirname(__file__) >>> ckpt = ModelCheckpoint(os.path.join(tmpdir, '{epoch}')) >>> os.path.basename(ckpt.format_checkpoint_name(0, {})) 'epoch=0.ckpt' >>> ckpt = ModelCheckpoint(os.path.join(tmpdir, '{epoch:03d}')) >>> os.path.basename(ckpt.format_checkpoint_name(5, {})) 'epoch=005.ckpt' >>> ckpt = ModelCheckpoint(os.path.join(tmpdir, '{epoch}-{val_loss:.2f}')) >>> os.path.basename(ckpt.format_checkpoint_name(2, dict(val_loss=0.123456))) 'epoch=2-val_loss=0.12.ckpt' >>> ckpt = ModelCheckpoint(os.path.join(tmpdir, '{missing:d}')) >>> os.path.basename(ckpt.format_checkpoint_name(0, {})) 'missing=0.ckpt' """ filename = self._format_checkpoint_name( self.filename, epoch, metrics, prefix=self.prefix ) if ver is not None: filename = self.CHECKPOINT_JOIN_CHAR.join((filename, f"v{ver}")) ckpt_name = f"{filename}.ckpt" return os.path.join(self.dirpath, ckpt_name) if self.dirpath else ckpt_name def __resolve_ckpt_dir(self, trainer, pl_module): """ Determines model checkpoint save directory at runtime. References attributes from the trainer's logger to determine where to save checkpoints. The base path for saving weights is set in this priority: 1. Checkpoint callback's path (if passed in) 2. The default_root_dir from trainer if trainer has no logger 3. The weights_save_path from trainer, if user provides it 4. User provided weights_saved_path The base path gets extended with logger name and version (if these are available) and subfolder "checkpoints". """ if self.dirpath is not None: return # short circuit self.filename = None if trainer.logger is not None: if trainer.weights_save_path != trainer.default_root_dir: # the user has changed weights_save_path, it overrides anything save_dir = trainer.weights_save_path else: save_dir = trainer.logger.save_dir or trainer.default_root_dir version = ( trainer.logger.version if isinstance(trainer.logger.version, str) else f"version_{trainer.logger.version}" ) version, name = trainer.accelerator_backend.broadcast((version, trainer.logger.name)) ckpt_path = os.path.join( save_dir, name, version, "checkpoints" ) else: ckpt_path = os.path.join(trainer.weights_save_path, "checkpoints") self.dirpath = ckpt_path if trainer.is_global_zero: self._fs.makedirs(self.dirpath, exist_ok=True) def _add_backward_monitor_support(self, trainer): metrics = trainer.logger_connector.callback_metrics # backward compatibility... need to deprecate if self.monitor is None and 'val_loss' in metrics: self.monitor = 'val_loss' if self.monitor is None and 'checkpoint_on' in metrics: self.monitor = 'checkpoint_on' if self.save_top_k is None and self.monitor is not None: self.save_top_k = 1 def _validate_monitor_key(self, trainer): metrics = trainer.logger_connector.callback_metrics # validate metric if self.monitor is not None and not self._is_valid_monitor_key(metrics): m = ( f"ModelCheckpoint(monitor='{self.monitor}') not found in the returned metrics:" f" {list(metrics.keys())}. " f"HINT: Did you call self.log('{self.monitor}', tensor) in the LightningModule?" ) raise MisconfigurationException(m) def _get_metric_interpolated_filepath_name(self, epoch, ckpt_name_metrics): filepath = self.format_checkpoint_name(epoch, ckpt_name_metrics) version_cnt = 0 while self._fs.exists(filepath): filepath = self.format_checkpoint_name( epoch, ckpt_name_metrics, ver=version_cnt ) # this epoch called before version_cnt += 1 return filepath def _monitor_candidates(self, trainer): ckpt_name_metrics = deepcopy(trainer.logger_connector.logged_metrics) ckpt_name_metrics.update(trainer.logger_connector.callback_metrics) ckpt_name_metrics.update(trainer.logger_connector.progress_bar_metrics) return ckpt_name_metrics def _save_last_checkpoint(self, trainer, pl_module, epoch, ckpt_name_metrics, filepath): should_save_last = self.monitor is None or self.save_last if not should_save_last: return last_filepath = filepath # when user ALSO asked for the 'last.ckpt' change the name if self.save_last: last_filepath = self._format_checkpoint_name( self.CHECKPOINT_NAME_LAST, epoch, ckpt_name_metrics, prefix=self.prefix ) last_filepath = os.path.join(self.dirpath, f"{last_filepath}.ckpt") self._save_model(last_filepath, trainer, pl_module) if ( self.last_model_path and self.last_model_path != last_filepath and (self.save_top_k != -1 or self.save_last) and trainer.is_global_zero ): self._del_model(self.last_model_path) self.last_model_path = last_filepath if self.monitor is None: self.best_model_path = self.last_model_path def _save_top_k_checkpoints(self, metrics, trainer, pl_module, epoch, filepath): current = metrics.get(self.monitor) if not isinstance(current, torch.Tensor) and current is not None: current = torch.tensor(current, device=pl_module.device) if self.check_monitor_top_k(current): self._update_best_and_save(filepath, current, epoch, trainer, pl_module) elif self.verbose: rank_zero_info( f"Epoch {epoch:d}: {self.monitor} was not in top {self.save_top_k}" ) def _is_valid_monitor_key(self, metrics): return self.monitor in metrics or len(metrics) == 0 def _update_best_and_save( self, filepath: str, current: torch.Tensor, epoch: int, trainer, pl_module, ): k = epoch + 1 if self.save_top_k == -1 else self.save_top_k del_list = [] if len(self.best_k_models) == k and k > 0: delpath = self.kth_best_model_path self.best_k_models.pop(self.kth_best_model_path) del_list.append(delpath) # do not save non, for replace then by +/- inf if torch.isnan(current): current = {"min": torch.tensor(float('inf')), "max": torch.tensor(-float('inf'))}[self.mode] self.best_k_models[filepath] = current if len(self.best_k_models) == k: # monitor dict has reached k elements _op = max if self.mode == "min" else min self.kth_best_model_path = _op( self.best_k_models, key=self.best_k_models.get ) self.kth_value = self.best_k_models[self.kth_best_model_path] _op = min if self.mode == "min" else max self.best_model_path = _op(self.best_k_models, key=self.best_k_models.get) self.best_model_score = self.best_k_models[self.best_model_path] if self.verbose: rank_zero_info( f"Epoch {epoch:d}: {self.monitor} reached" f" {current:0.5f} (best {self.best_model_score:0.5f})," f" saving model to {filepath} as top {k}" ) self._save_model(filepath, trainer, pl_module) for cur_path in del_list: if cur_path != filepath: self._del_model(cur_path) def to_yaml(self, filepath: Optional[Union[str, Path]] = None): """ Saves the `best_k_models` dict containing the checkpoint paths with the corresponding scores to a YAML file. """ best_k = {k: v.item() for k, v in self.best_k_models.items()} if filepath is None: filepath = os.path.join(self.dirpath, "best_k_models.yaml") with self._fs.open(filepath, "w") as fp: yaml.dump(best_k, fp)