.. testsetup:: *
from pytorch_lightning.core.lightning import LightningModule
from pytorch_lightning.trainer.trainer import Trainer
.. _introduction-guide:
Step-by-step walk-through
=========================
PyTorch Lightning provides a very simple template for organizing your PyTorch code. Once
you've organized it into a LightningModule, it automates most of the training for you.
In this guide, we will walk through the API by looking at how you would organize your PyTorch
code to work with Lightning.
.. raw:: html
|
By doing this refactor you'll:
- Make your code more reusable.
- You will not lose any flexibility.
- You'll gain free features like 16-bit precision, distributed training etc... While it may be overkill
for small projects, you won't get bogged down with engineering as your project grows in complexity.
----------------
Goal of this guide
------------------
This guide walks through the major parts of the library to help you understand
what each part does. But at the end of the day, you write the same PyTorch code... just organize it
into the LightningModule template which means you keep ALL the flexibility without having to deal with
any of the boilerplate code
To show how Lightning works, we'll start with an MNIST classifier. We'll end showing how
to use inheritance to very quickly create an AutoEncoder.
.. note:: Any DL/ML PyTorch project fits into the Lightning structure. Here we just focus on 3 types
of research to illustrate.
----------------
Installing Lightning
--------------------
Lightning is trivial to install.
.. code-block:: bash
conda activate my_env
pip install pytorch-lightning
Or without conda environments, anywhere you can use pip.
.. code-block:: bash
pip install pytorch-lightning
Or with conda
.. code-block:: bash
conda install pytorch-lightning -c conda-forge
----------------
Lightning Philosophy
--------------------
Lightning factors DL/ML code into three types:
- Research code
- Engineering code
- Non-essential code
Research code
^^^^^^^^^^^^^
In the MNIST generation example, the research code would be the particular system and how it's trained (ie: A GAN or VAE).
In Lightning, this code is abstracted out by the `LightningModule`.
.. code-block:: python
l1 = nn.Linear(...)
l2 = nn.Linear(...)
decoder = Decoder()
x1 = l1(x)
x2 = l2(x2)
out = decoder(features, x)
loss = perceptual_loss(x1, x2, x) + CE(out, x)
Engineering code
^^^^^^^^^^^^^^^^
The Engineering code is all the code related to training this system. Things such as early stopping, distribution
over GPUs, 16-bit precision, etc. This is normally code that is THE SAME across most projects.
In Lightning, this code is abstracted out by the `Trainer`.
.. code-block:: python
model.cuda(0)
x = x.cuda(0)
distributed = DistributedParallel(model)
with gpu_zero:
download_data()
dist.barrier()
Non-essential code
^^^^^^^^^^^^^^^^^^
This is code that helps the research but isn't relevant to the research code. Some examples might be:
1. Inspect gradients
2. Log to tensorboard.
In Lightning this code is abstracted out by `Callbacks`.
.. code-block:: python
# log samples
z = Q.rsample()
generated = decoder(z)
self.experiment.log('images', generated)
----------------
Elements of a research project
------------------------------
Every research project requires the same core ingredients:
1. A model
2. Train/val/test data
3. Optimizer(s)
4. Training step computations
5. Validation step computations
6. Test step computations
The Model
^^^^^^^^^
The LightningModule provides the structure on how to organize these 5 ingredients.
Let's first start with the model. In this case we'll design
a 3-layer neural network.
.. testcode::
import torch
from torch.nn import functional as F
from torch import nn
from pytorch_lightning.core.lightning import LightningModule
class LitMNIST(LightningModule):
def __init__(self):
super().__init__()
# mnist images are (1, 28, 28) (channels, width, height)
self.layer_1 = torch.nn.Linear(28 * 28, 128)
self.layer_2 = torch.nn.Linear(128, 256)
self.layer_3 = torch.nn.Linear(256, 10)
def forward(self, x):
batch_size, channels, width, height = x.size()
# (b, 1, 28, 28) -> (b, 1*28*28)
x = x.view(batch_size, -1)
# layer 1
x = self.layer_1(x)
x = torch.relu(x)
# layer 2
x = self.layer_2(x)
x = torch.relu(x)
# layer 3
x = self.layer_3(x)
# probability distribution over labels
x = torch.log_softmax(x, dim=1)
return x
Notice this is a `LightningModule` instead of a `torch.nn.Module`. A LightningModule is
equivalent to a PyTorch Module except it has added functionality. However, you can use it
EXACTLY the same as you would a PyTorch Module.
.. testcode::
net = LitMNIST()
x = torch.Tensor(1, 1, 28, 28)
out = net(x)
.. rst-class:: sphx-glr-script-out
Out:
.. code-block:: python
torch.Size([1, 10])
Data
^^^^
Lightning operates on pure dataloaders. Here's the PyTorch code for loading MNIST.
.. testcode::
:skipif: not TORCHVISION_AVAILABLE
from torch.utils.data import DataLoader, random_split
from torchvision.datasets import MNIST
import os
from torchvision import datasets, transforms
# transforms
# prepare transforms standard to MNIST
transform=transforms.Compose([transforms.ToTensor(),
transforms.Normalize((0.1307,), (0.3081,))])
# data
mnist_train = MNIST(os.getcwd(), train=True, download=True)
mnist_train = DataLoader(mnist_train, batch_size=64)
.. testoutput::
:hide:
:skipif: os.path.isdir(os.path.join(os.getcwd(), 'MNIST')) or not TORCHVISION_AVAILABLE
Downloading ...
Extracting ...
Downloading ...
Extracting ...
Downloading ...
Extracting ...
Processing...
Done!
There's nothing special you need to do with PyTorch Lightning! Just pass in the dataloaders to the `.fit()` function.
.. code-block:: python
model = LitMNIST()
trainer = Trainer()
trainer.fit(model, mnist_train)
DataModules
***********
Defining free-floating dataloaders, splits, download instructions and such can get messy.
In this case, it's better to group the full definition of a dataset into a `DataModule` which includes:
- Download instructions
- Processing instructions
- Split instructions
- Train dataloader
- Val dataloader(s)
- Test dataloader(s)
.. code-block:: python
class MyDataModule(pl.DataModule):
def __init__(self):
super().__init__()
self.train_dims = None
self.vocab_size = 0
def prepare_data(self):
# called only on 1 GPU
download_dataset()
tokenize()
build_vocab()
def setup(self):
# called on every GPU
vocab = load_vocab
self.vocab_size = len(vocab)
self.train, self.val, self.test = load_datasets()
self.train_dims = self.train.next_batch.size()
def train_dataloader(self):
transforms = ...
return DataLoader(self.train, transforms)
def val_dataloader(self):
transforms = ...
return DataLoader(self.val, transforms)
def test_dataloader(self):
transforms = ...
return DataLoader(self.test, transforms)
Using DataModules allows easier sharing of full dataset definitions.
.. code-block:: python
# use an MNIST dataset
mnist_dm = MNISTDatamodule()
model = LitModel(num_classes=mnist_dm.num_classes)
trainer.fit(model, mnist_dm)
# or other datasets with the same model
imagenet_dm = ImagenetDatamodule()
model = LitModel(num_classes=imagenet_dm.num_classes)
trainer.fit(model, imagenet_dm)
.. note:: `prepare_data` is called only one 1 GPU in distributed training (automatically)
.. note:: `setup` is called on every GPU (automatically)
Models defined by data
**********************
When your models need to know about the data, it's best to process the data before passing it to the model.
.. code-block:: python
# init dm AND call the processing manually
dm = ImagenetDataModule()
dm.prepare_data()
dm.setup()
model = LitModel(out_features=dm.num_classes, img_width=dm.img_width, img_height=dm.img_height)
trainer.fit(model)
1. use `prepare_data` to download and process the dataset.
2. use `setup` to do splits, and build your model internals
|
.. testcode::
class LitMNIST(LightningModule):
def __init__(self):
self.l1 = None
def prepare_data(self):
download_data()
tokenize()
def setup(self, step):
# step is either 'fit' or 'test' 90% of the time not relevant
data = load_data()
num_classes = data.classes
self.l1 = nn.Linear(..., num_classes)
Optimizer
^^^^^^^^^
Next we choose what optimizer to use for training our system.
In PyTorch we do it as follows:
.. code-block:: python
from torch.optim import Adam
optimizer = Adam(LitMNIST().parameters(), lr=1e-3)
In Lightning we do the same but organize it under the configure_optimizers method.
.. testcode::
class LitMNIST(LightningModule):
def configure_optimizers(self):
return Adam(self.parameters(), lr=1e-3)
.. note:: The LightningModule itself has the parameters, so pass in self.parameters()
However, if you have multiple optimizers use the matching parameters
.. testcode::
class LitMNIST(LightningModule):
def configure_optimizers(self):
return Adam(self.generator(), lr=1e-3), Adam(self.discriminator(), lr=1e-3)
Training step
^^^^^^^^^^^^^
The training step is what happens inside the training loop.
.. code-block:: python
for epoch in epochs:
for batch in data:
# TRAINING STEP
# ....
# TRAINING STEP
loss.backward()
optimizer.step()
optimizer.zero_grad()
In the case of MNIST we do the following
.. code-block:: python
for epoch in epochs:
for batch in data:
# ------ TRAINING STEP START ------
x, y = batch
logits = model(x)
loss = F.nll_loss(logits, y)
# ------ TRAINING STEP END ------
loss.backward()
optimizer.step()
optimizer.zero_grad()
In Lightning, everything that is in the training step gets organized under the `training_step` function
in the LightningModule
.. testcode::
class LitMNIST(LightningModule):
def training_step(self, batch, batch_idx):
x, y = batch
logits = self(x)
loss = F.nll_loss(logits, y)
return loss
Again, this is the same PyTorch code except that it has been organized by the LightningModule.
This code is not restricted which means it can be as complicated as a full seq-2-seq, RL loop, GAN, etc...
TrainResult
^^^^^^^^^^^
Whenever you'd like to log, or sync values across GPUs use `TrainResult`.
- log to Tensorboard or the other logger of your choice.
- log to the progress-bar.
- log on every step.
- log aggregate epoch metrics.
- average values across GPUs/TPU cores
.. code-block:: python
def training_step(...):
return loss
# equivalent
return pl.TrainResult(loss)
# log a metric
result = pl.TrainResult(loss)
result.log('train_loss', loss)
# equivalent
result.log('train_loss', loss, on_step=True, on_epoch=False, prog_bar=False, logger=True, reduce_fx=torch.mean)
When training across accelerators (GPUs/TPUs) you can sync a metric if needed.
.. code-block:: python
# sync across GPUs / TPUs, etc...
result.log('train_loss', loss, sync_dist=True)
If you are only using a training_loop (`training_step`) without a
validation or test loop (`validation_step`, `test_step`), you can still use EarlyStopping or automatic checkpointing
.. code-block:: python
result = pl.TrainResult(loss, checkpoint_on=loss, early_stop_on=loss)
return result
----------------
Training
--------
So far we defined 4 key ingredients in pure PyTorch but organized the code with the LightningModule.
1. Model.
2. Training data.
3. Optimizer.
4. What happens in the training loop.
|
For clarity, we'll recall that the full LightningModule now looks like this.
.. code-block:: python
class LitMNIST(LightningModule):
def __init__(self):
super().__init__()
self.layer_1 = torch.nn.Linear(28 * 28, 128)
self.layer_2 = torch.nn.Linear(128, 256)
self.layer_3 = torch.nn.Linear(256, 10)
def forward(self, x):
batch_size, channels, width, height = x.size()
x = x.view(batch_size, -1)
x = self.layer_1(x)
x = torch.relu(x)
x = self.layer_2(x)
x = torch.relu(x)
x = self.layer_3(x)
x = torch.log_softmax(x, dim=1)
return x
def training_step(self, batch, batch_idx):
x, y = batch
logits = self(x)
loss = F.nll_loss(logits, y)
# using TrainResult to enable logging
result = pl.TrainResult(loss)
result.log('train_loss', loss)
return result
Again, this is the same PyTorch code, except that it's organized
by the LightningModule. This organization now lets us train this model
Train on CPU
^^^^^^^^^^^^
.. code-block:: python
from pytorch_lightning import Trainer
model = LitMNIST()
trainer = Trainer()
trainer.fit(model, train_loader)
You should see a weights summary and the following progress bar
.. code-block:: shell
Epoch 1: 4%|▎ | 40/1095 [00:03<01:37, 10.84it/s, loss=4.501, v_num=10]
Logging
^^^^^^^
When we added the `TrainResult` in the return dictionary it went into the built-in tensorboard logger.
But you could have also logged by calling:
.. code-block:: python
def training_step(self, batch, batch_idx):
# ...
loss = ...
self.logger.summary.scalar('loss', loss, step=self.global_step)
# equivalent
result = TrainResult()
result.log('loss', loss)
Which will generate automatic tensorboard logs.
.. figure:: /_images/mnist_imgs/mnist_tb.png
:alt: mnist CPU bar
:width: 500
|
But you can also use any of the `number of other loggers `_ we support.
GPU training
^^^^^^^^^^^^
But the beauty is all the magic you can do with the trainer flags. For instance, to run this model on a GPU:
.. code-block:: python
model = LitMNIST()
trainer = Trainer(gpus=1)
trainer.fit(model, train_loader)
.. figure:: /_images/mnist_imgs/mnist_gpu.png
:alt: mnist GPU bar
Multi-GPU training
^^^^^^^^^^^^^^^^^^
Or you can also train on multiple GPUs.
.. code-block:: python
model = LitMNIST()
trainer = Trainer(gpus=8)
trainer.fit(model, train_loader)
Or multiple nodes
.. code-block:: python
# (32 GPUs)
model = LitMNIST()
trainer = Trainer(gpus=8, num_nodes=4, distributed_backend='ddp')
trainer.fit(model, train_loader)
Refer to the `distributed computing guide for more details `_.
TPUs
^^^^
Did you know you can use PyTorch on TPUs? It's very hard to do, but we've
worked with the xla team to use their awesome library to get this to work
out of the box!
Let's train on Colab (`full demo available here `_)
First, change the runtime to TPU (and reinstall lightning).
.. figure:: /_images/mnist_imgs/runtime_tpu.png
:alt: mnist GPU bar
:width: 400
.. figure:: /_images/mnist_imgs/restart_runtime.png
:alt: mnist GPU bar
:width: 400
|
Next, install the required xla library (adds support for PyTorch on TPUs)
.. code-block:: shell
!curl https://raw.githubusercontent.com/pytorch/xla/master/contrib/scripts/env-setup.py -o pytorch-xla-env-setup.py
!python pytorch-xla-env-setup.py --version nightly --apt-packages libomp5 libopenblas-dev
In distributed training (multiple GPUs and multiple TPU cores) each GPU or TPU core will run a copy
of this program. This means that without taking any care you will download the dataset N times which
will cause all sorts of issues.
To solve this problem, make sure your download code is in the `prepare_data` method in the DataModule.
In this method we do all the preparation we need to do once (instead of on every gpu).
`prepare_data` can be called in two ways, once per node or only on the root node
(`Trainer(prepare_data_per_node=False)`).
.. code-block:: python
class MNISTDataModule(LightningDataModule):
def __init__(self, batch_size=64):
super().__init__()
self.batch_size = batch_size
def prepare_data(self):
# download only
MNIST(os.getcwd(), train=True, download=True, transform=transforms.ToTensor())
MNIST(os.getcwd(), train=False, download=True, transform=transforms.ToTensor())
def setup(self, stage):
# transform
transform=transforms.Compose([transforms.ToTensor()])
MNIST(os.getcwd(), train=True, download=False, transform=transform)
MNIST(os.getcwd(), train=False, download=False, transform=transform)
# train/val split
mnist_train, mnist_val = random_split(mnist_train, [55000, 5000])
# assign to use in dataloaders
self.train_dataset = mnist_train
self.val_dataset = mnist_val
self.test_dataset = mnist_test
def train_dataloader(self):
return DataLoader(self.train_dataset, batch_size=self.batch_size)
def val_dataloader(self):
return DataLoader(self.val_dataset, batch_size=self.batch_size)
def test_dataloader(self):
return DataLoader(self.test_dataset, batch_size=self.batch_size)
The `prepare_data` method is also a good place to do any data processing that needs to be done only
once (ie: download or tokenize, etc...).
.. note:: Lightning inserts the correct DistributedSampler for distributed training. No need to add yourself!
Now we can train the LightningModule on a TPU without doing anything else!
.. code-block:: python
dm = MNISTDataModule()
model = LitMNIST()
trainer = Trainer(tpu_cores=8)
trainer.fit(model, dm)
You'll now see the TPU cores booting up.
.. figure:: /_images/mnist_imgs/tpu_start.png
:alt: TPU start
:width: 400
Notice the epoch is MUCH faster!
.. figure:: /_images/mnist_imgs/tpu_fast.png
:alt: TPU speed
:width: 600
----------------
.. include:: hyperparameters.rst
----------------
Validating
----------
For most cases, we stop training the model when the performance on a validation
split of the data reaches a minimum.
Just like the `training_step`, we can define a `validation_step` to check whatever
metrics we care about, generate samples or add more to our logs.
Since the `validation_step` processes a single batch, use the `EvalResult` to log metrics for the full epoch.
.. code-block:: python
def validation_step(self, batch, batch_idx):
result = pl.EvalResult(checkpoint_on=loss)
result.log('val_loss', loss)
# equivalent
result.log('val_loss', loss, prog_bar=False, logger=True, on_step=False, on_epoch=True, reduce_fx=torch.mean)
return result
Now we can train with a validation loop as well.
.. code-block:: python
from pytorch_lightning import Trainer
model = LitMNIST()
trainer = Trainer(tpu_cores=8)
trainer.fit(model, train_loader, val_loader)
You may have noticed the words `Validation sanity check` logged. This is because Lightning runs 2 batches
of validation before starting to train. This is a kind of unit test to make sure that if you have a bug
in the validation loop, you won't need to potentially wait a full epoch to find out.
.. note:: Lightning disables gradients, puts model in eval mode and does everything needed for validation.
Val loop under the hood
^^^^^^^^^^^^^^^^^^^^^^^
Under the hood, Lightning does the following:
.. code-block:: python
model = Model()
model.train()
torch.set_grad_enabled(True)
for epoch in epochs:
for batch in data:
# ...
# train
# validate
model.eval()
torch.set_grad_enabled(False)
outputs = []
for batch in val_data:
x, y = batch # validation_step
y_hat = model(x) # validation_step
loss = loss(y_hat, x) # validation_step
outputs.append({'val_loss': loss}) # validation_step
full_loss = outputs.mean() # validation_epoch_end
Optional methods
^^^^^^^^^^^^^^^^
If you still need even more fine-grain control, define the other optional methods for the loop.
.. code-block:: python
def validation_step(self, batch, batch_idx):
result = pl.EvalResult()
result.prediction = some_prediction
return result
def validation_epoch_end(self, val_step_outputs):
# do something with all the predictions from each validation_step
all_predictions = val_step_outputs.prediction
----------------
Testing
-------
Once our research is done and we're about to publish or deploy a model, we normally want to figure out
how it will generalize in the "real world." For this, we use a held-out split of the data for testing.
Just like the validation loop, we define a test loop
.. code-block:: python
class LitMNIST(LightningModule):
def test_step(self, batch, batch_idx):
x, y = batch
logits = self(x)
loss = F.nll_loss(logits, y)
result = pl.EvalResult()
result.log('test_loss', loss)
return result
However, to make sure the test set isn't used inadvertently, Lightning has a separate API to run tests.
Once you train your model simply call `.test()`.
.. code-block:: python
from pytorch_lightning import Trainer
model = LitMNIST()
trainer = Trainer(tpu_cores=8)
trainer.fit(model)
# run test set
result = trainer.test()
print(result)
.. rst-class:: sphx-glr-script-out
Out:
.. code-block:: none
--------------------------------------------------------------
TEST RESULTS
{'test_loss': tensor(1.1703, device='cuda:0')}
--------------------------------------------------------------
You can also run the test from a saved lightning model
.. code-block:: python
model = LitMNIST.load_from_checkpoint(PATH)
trainer = Trainer(tpu_cores=8)
trainer.test(model)
.. note:: Lightning disables gradients, puts model in eval mode and does everything needed for testing.
.. warning:: .test() is not stable yet on TPUs. We're working on getting around the multiprocessing challenges.
----------------
Predicting
----------
Again, a LightningModule is exactly the same as a PyTorch module. This means you can load it
and use it for prediction.
.. code-block:: python
model = LitMNIST.load_from_checkpoint(PATH)
x = torch.Tensor(1, 1, 28, 28)
out = model(x)
On the surface, it looks like `forward` and `training_step` are similar. Generally, we want to make sure that
what we want the model to do is what happens in the `forward`. whereas the `training_step` likely calls forward from
within it.
.. testcode::
class MNISTClassifier(LightningModule):
def forward(self, x):
batch_size, channels, width, height = x.size()
x = x.view(batch_size, -1)
x = self.layer_1(x)
x = torch.relu(x)
x = self.layer_2(x)
x = torch.relu(x)
x = self.layer_3(x)
x = torch.log_softmax(x, dim=1)
return x
def training_step(self, batch, batch_idx):
x, y = batch
logits = self(x)
loss = F.nll_loss(logits, y)
return loss
.. code-block:: python
model = MNISTClassifier()
x = mnist_image()
logits = model(x)
In this case, we've set this LightningModel to predict logits. But we could also have it predict feature maps:
.. testcode::
class MNISTRepresentator(LightningModule):
def forward(self, x):
batch_size, channels, width, height = x.size()
x = x.view(batch_size, -1)
x = self.layer_1(x)
x1 = torch.relu(x)
x = self.layer_2(x1)
x2 = torch.relu(x)
x3 = self.layer_3(x2)
return [x, x1, x2, x3]
def training_step(self, batch, batch_idx):
x, y = batch
out, l1_feats, l2_feats, l3_feats = self(x)
logits = torch.log_softmax(out, dim=1)
ce_loss = F.nll_loss(logits, y)
loss = perceptual_loss(l1_feats, l2_feats, l3_feats) + ce_loss
return loss
.. code-block:: python
model = MNISTRepresentator.load_from_checkpoint(PATH)
x = mnist_image()
feature_maps = model(x)
Or maybe we have a model that we use to do generation
.. testcode::
class LitMNISTDreamer(LightningModule):
def forward(self, z):
imgs = self.decoder(z)
return imgs
def training_step(self, batch, batch_idx):
x, y = batch
representation = self.encoder(x)
imgs = self(representation)
loss = perceptual_loss(imgs, x)
return loss
.. code-block:: python
model = LitMNISTDreamer.load_from_checkpoint(PATH)
z = sample_noise()
generated_imgs = model(z)
How you split up what goes in `forward` vs `training_step` depends on how you want to use this model for
prediction.
----------------
Extensibility
-------------
Although lightning makes everything super simple, it doesn't sacrifice any flexibility or control.
Lightning offers multiple ways of managing the training state.
Training overrides
^^^^^^^^^^^^^^^^^^
Any part of the training, validation and testing loop can be modified.
For instance, if you wanted to do your own backward pass, you would override the
default implementation
.. testcode::
def backward(self, use_amp, loss, optimizer):
loss.backward()
With your own
.. testcode::
class LitMNIST(LightningModule):
def backward(self, use_amp, loss, optimizer, optimizer_idx):
# do a custom way of backward
loss.backward(retain_graph=True)
Or if you wanted to initialize ddp in a different way than the default one
.. testcode::
def configure_ddp(self, model, device_ids):
# Lightning DDP simply routes to test_step, val_step, etc...
model = LightningDistributedDataParallel(
model,
device_ids=device_ids,
find_unused_parameters=True
)
return model
you could do your own:
.. testcode::
class LitMNIST(LightningModule):
def configure_ddp(self, model, device_ids):
model = Horovod(model)
# model = Ray(model)
return model
Every single part of training is configurable this way.
For a full list look at `LightningModule `_.
----------------
Callbacks
---------
Another way to add arbitrary functionality is to add a custom callback
for hooks that you might care about
.. testcode::
from pytorch_lightning.callbacks import Callback
class MyPrintingCallback(Callback):
def on_init_start(self, trainer):
print('Starting to init trainer!')
def on_init_end(self, trainer):
print('Trainer is init now')
def on_train_end(self, trainer, pl_module):
print('do something when training ends')
And pass the callbacks into the trainer
.. testcode::
trainer = Trainer(callbacks=[MyPrintingCallback()])
.. testoutput::
:hide:
Starting to init trainer!
Trainer is init now
.. note::
See full list of 12+ hooks in the :ref:`callbacks`.
----------------
.. include:: child_modules.rst
----------------
.. include:: transfer_learning.rst