lightning/pytorch_lightning/core/hooks.py

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from typing import Any
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import torch
from torch import Tensor
Rework of Sklearn Metrics (#1327) * Create utils.py * Create __init__.py * redo sklearn metrics * add some more metrics * add sklearn metrics * Create __init__.py * redo sklearn metrics * New metric classes (#1326) * Create metrics package * Create metric.py * Create utils.py * Create __init__.py * add tests for metric utils * add docstrings for metrics utils * add function to recursively apply other function to collection * add tests for this function * update test * Update pytorch_lightning/metrics/metric.py Co-Authored-By: Jirka Borovec <Borda@users.noreply.github.com> * update metric name * remove example docs * fix tests * add metric tests * fix to tensor conversion * fix apply to collection * Update CHANGELOG.md * Update pytorch_lightning/metrics/metric.py Co-Authored-By: Jirka Borovec <Borda@users.noreply.github.com> * remove tests from init * add missing type annotations * rename utils to convertors * Create metrics.rst * Update index.rst * Update index.rst * Update pytorch_lightning/metrics/convertors.py Co-Authored-By: Jirka Borovec <Borda@users.noreply.github.com> * Update pytorch_lightning/metrics/convertors.py Co-Authored-By: Jirka Borovec <Borda@users.noreply.github.com> * add doctest example * rename file and fix imports * added parametrized test * replace lambda with inlined function * rename apply_to_collection to apply_func * Separated class description from init args * Apply suggestions from code review Co-Authored-By: Jirka Borovec <Borda@users.noreply.github.com> * adjust random values * suppress output when seeding * remove gpu from doctest * Add requested changes and add ellipsis for doctest * forgot to push these files... * add explicit check for dtype to convert to * fix ddp tests * remove explicit ddp destruction Co-authored-by: Jirka Borovec <Borda@users.noreply.github.com> * add sklearn metrics * start adding sklearn tests * fix typo * return x and y only for curves * fix typo * add missing tests for sklearn funcs * imports * __all__ * imports * fix sklearn arguments * fix imports * update requirements * Update CHANGELOG.md * Update test_sklearn_metrics.py * formatting * formatting * format * fix all warnings and formatting problems * Update environment.yml * Update requirements-extra.txt * Update environment.yml * Update requirements-extra.txt * fix all warnings and formatting problems * Update CHANGELOG.md * docs * inherit * docs inherit. * docs * Apply suggestions from code review Co-authored-by: Nicki Skafte <skaftenicki@gmail.com> * docs * req * min * Apply suggestions from code review Co-authored-by: Tullie Murrell <tulliemurrell@gmail.com> Co-authored-by: Jirka Borovec <Borda@users.noreply.github.com> Co-authored-by: Jirka <jirka@pytorchlightning.ai> Co-authored-by: Adrian Wälchli <aedu.waelchli@gmail.com> Co-authored-by: Nicki Skafte <skaftenicki@gmail.com> Co-authored-by: Tullie Murrell <tulliemurrell@gmail.com>
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from torch.nn import Module
from torch.optim.optimizer import Optimizer
from pytorch_lightning.utilities import move_data_to_device
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try:
from apex import amp
except ImportError:
APEX_AVAILABLE = False
else:
APEX_AVAILABLE = True
Rework of Sklearn Metrics (#1327) * Create utils.py * Create __init__.py * redo sklearn metrics * add some more metrics * add sklearn metrics * Create __init__.py * redo sklearn metrics * New metric classes (#1326) * Create metrics package * Create metric.py * Create utils.py * Create __init__.py * add tests for metric utils * add docstrings for metrics utils * add function to recursively apply other function to collection * add tests for this function * update test * Update pytorch_lightning/metrics/metric.py Co-Authored-By: Jirka Borovec <Borda@users.noreply.github.com> * update metric name * remove example docs * fix tests * add metric tests * fix to tensor conversion * fix apply to collection * Update CHANGELOG.md * Update pytorch_lightning/metrics/metric.py Co-Authored-By: Jirka Borovec <Borda@users.noreply.github.com> * remove tests from init * add missing type annotations * rename utils to convertors * Create metrics.rst * Update index.rst * Update index.rst * Update pytorch_lightning/metrics/convertors.py Co-Authored-By: Jirka Borovec <Borda@users.noreply.github.com> * Update pytorch_lightning/metrics/convertors.py Co-Authored-By: Jirka Borovec <Borda@users.noreply.github.com> * add doctest example * rename file and fix imports * added parametrized test * replace lambda with inlined function * rename apply_to_collection to apply_func * Separated class description from init args * Apply suggestions from code review Co-Authored-By: Jirka Borovec <Borda@users.noreply.github.com> * adjust random values * suppress output when seeding * remove gpu from doctest * Add requested changes and add ellipsis for doctest * forgot to push these files... * add explicit check for dtype to convert to * fix ddp tests * remove explicit ddp destruction Co-authored-by: Jirka Borovec <Borda@users.noreply.github.com> * add sklearn metrics * start adding sklearn tests * fix typo * return x and y only for curves * fix typo * add missing tests for sklearn funcs * imports * __all__ * imports * fix sklearn arguments * fix imports * update requirements * Update CHANGELOG.md * Update test_sklearn_metrics.py * formatting * formatting * format * fix all warnings and formatting problems * Update environment.yml * Update requirements-extra.txt * Update environment.yml * Update requirements-extra.txt * fix all warnings and formatting problems * Update CHANGELOG.md * docs * inherit * docs inherit. * docs * Apply suggestions from code review Co-authored-by: Nicki Skafte <skaftenicki@gmail.com> * docs * req * min * Apply suggestions from code review Co-authored-by: Tullie Murrell <tulliemurrell@gmail.com> Co-authored-by: Jirka Borovec <Borda@users.noreply.github.com> Co-authored-by: Jirka <jirka@pytorchlightning.ai> Co-authored-by: Adrian Wälchli <aedu.waelchli@gmail.com> Co-authored-by: Nicki Skafte <skaftenicki@gmail.com> Co-authored-by: Tullie Murrell <tulliemurrell@gmail.com>
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class ModelHooks(Module):
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def setup(self, stage: str):
"""
Called at the beginning of fit and test.
Args:
stage: either 'fit' or 'test'
"""
def teardown(self, stage: str):
"""
Called at the end of fit and test.
Args:
stage: either 'fit' or 'test'
"""
def on_fit_start(self):
"""
Called at the very beginning of fit.
If on DDP it is called on every process
"""
def on_fit_end(self):
"""
Called at the very end of fit.
If on DDP it is called on every process
"""
# TODO: remove in v0.9.0
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def on_sanity_check_start(self):
"""
Called before starting evaluation.
Warning:
Deprecated. Will be removed in v0.9.0.
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"""
def on_train_start(self) -> None:
"""
Called at the beginning of training before sanity check.
"""
# do something at the start of training
def on_train_end(self) -> None:
"""
Called at the end of training before logger experiment is closed.
"""
# do something at the end of training
def on_batch_start(self, batch: Any) -> None:
"""
Called in the training loop before anything happens for that batch.
If you return -1 here, you will skip training for the rest of the current epoch.
Args:
batch: The batched data as it is returned by the training DataLoader.
"""
# do something when the batch starts
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def on_batch_end(self) -> None:
"""
Called in the training loop after the batch.
"""
# do something when the batch ends
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def on_epoch_start(self) -> None:
"""
Called in the training loop at the very beginning of the epoch.
"""
# do something when the epoch starts
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def on_epoch_end(self) -> None:
"""
Called in the training loop at the very end of the epoch.
"""
# do something when the epoch ends
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def on_pre_performance_check(self) -> None:
"""
Called at the very beginning of the validation loop.
"""
# do something before validation starts
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def on_post_performance_check(self) -> None:
"""
Called at the very end of the validation loop.
"""
# do something before validation end
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def on_before_zero_grad(self, optimizer: Optimizer) -> None:
"""
Called after optimizer.step() and before optimizer.zero_grad().
Called in the training loop after taking an optimizer step and before zeroing grads.
Good place to inspect weight information with weights updated.
This is where it is called::
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for optimizer in optimizers:
optimizer.step()
model.on_before_zero_grad(optimizer) # < ---- called here
optimizer.zero_grad
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Args:
optimizer: The optimizer for which grads should be zeroed.
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"""
# do something with the optimizer or inspect it.
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def on_after_backward(self) -> None:
"""
Called in the training loop after loss.backward() and before optimizers do anything.
This is the ideal place to inspect or log gradient information.
Example::
def on_after_backward(self):
# example to inspect gradient information in tensorboard
if self.trainer.global_step % 25 == 0: # don't make the tf file huge
params = self.state_dict()
for k, v in params.items():
grads = v
name = k
self.logger.experiment.add_histogram(tag=name, values=grads,
global_step=self.trainer.global_step)
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"""
def backward(self, trainer, loss: Tensor, optimizer: Optimizer, optimizer_idx: int) -> None:
"""
Override backward with your own implementation if you need to.
Args:
trainer: Pointer to the trainer
loss: Loss is already scaled by accumulated grads
optimizer: Current optimizer being used
optimizer_idx: Index of the current optimizer being used
Called to perform backward step.
Feel free to override as needed.
The loss passed in has already been scaled for accumulated gradients if requested.
Example::
def backward(self, use_amp, loss, optimizer):
if use_amp:
with amp.scale_loss(loss, optimizer) as scaled_loss:
scaled_loss.backward()
else:
loss.backward()
"""
Enable TPU support (#868) * added tpu docs * added tpu flags * add tpu docs + init training call * amp * amp * amp * amp * optimizer step * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * fix test pkg create (#873) * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added test return and print * added test return and print * added test return and print * added test return and print * added test return and print * Update pytorch_lightning/trainer/trainer.py Co-Authored-By: Luis Capelo <luiscape@gmail.com> * Fix segmentation example (#876) * removed torchvision model and added custom model * minor fix * Fixed relative imports issue * Fix/typo (#880) * Update greetings.yml * Update greetings.yml * Changelog (#869) * Create CHANGELOG.md * Update CHANGELOG.md * Update CHANGELOG.md * Update PULL_REQUEST_TEMPLATE.md * Update PULL_REQUEST_TEMPLATE.md * Add PR links to Version 0.6.0 in CHANGELOG.md * Add PR links for Unreleased in CHANGELOG.md * Update PULL_REQUEST_TEMPLATE.md * Fixing Function Signatures (#871) * added tpu docs * added tpu flags * add tpu docs + init training call * amp * amp * amp * amp * optimizer step * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added test return and print * added test return and print * added test return and print * added test return and print * added test return and print * added test return and print * added test return and print * added test return and print Co-authored-by: Jirka Borovec <Borda@users.noreply.github.com> Co-authored-by: Luis Capelo <luiscape@gmail.com> Co-authored-by: Akshay Kulkarni <akshayk.vnit@gmail.com> Co-authored-by: Ethan Harris <ewah1g13@soton.ac.uk> Co-authored-by: Shikhar Chauhan <xssChauhan@users.noreply.github.com>
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if trainer.precision == 16:
# .backward is not special on 16-bit with TPUs
if trainer.on_tpu:
return
if self.trainer.use_native_amp:
self.trainer.scaler.scale(loss).backward()
else:
Enable TPU support (#868) * added tpu docs * added tpu flags * add tpu docs + init training call * amp * amp * amp * amp * optimizer step * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * fix test pkg create (#873) * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added test return and print * added test return and print * added test return and print * added test return and print * added test return and print * Update pytorch_lightning/trainer/trainer.py Co-Authored-By: Luis Capelo <luiscape@gmail.com> * Fix segmentation example (#876) * removed torchvision model and added custom model * minor fix * Fixed relative imports issue * Fix/typo (#880) * Update greetings.yml * Update greetings.yml * Changelog (#869) * Create CHANGELOG.md * Update CHANGELOG.md * Update CHANGELOG.md * Update PULL_REQUEST_TEMPLATE.md * Update PULL_REQUEST_TEMPLATE.md * Add PR links to Version 0.6.0 in CHANGELOG.md * Add PR links for Unreleased in CHANGELOG.md * Update PULL_REQUEST_TEMPLATE.md * Fixing Function Signatures (#871) * added tpu docs * added tpu flags * add tpu docs + init training call * amp * amp * amp * amp * optimizer step * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added auto data transfer to TPU * added test return and print * added test return and print * added test return and print * added test return and print * added test return and print * added test return and print * added test return and print * added test return and print Co-authored-by: Jirka Borovec <Borda@users.noreply.github.com> Co-authored-by: Luis Capelo <luiscape@gmail.com> Co-authored-by: Akshay Kulkarni <akshayk.vnit@gmail.com> Co-authored-by: Ethan Harris <ewah1g13@soton.ac.uk> Co-authored-by: Shikhar Chauhan <xssChauhan@users.noreply.github.com>
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with amp.scale_loss(loss, optimizer) as scaled_loss:
scaled_loss.backward()
else:
loss.backward()
def transfer_batch_to_device(self, batch: Any, device: torch.device) -> Any:
"""
Override this hook if your :class:`~torch.utils.data.DataLoader` returns tensors
wrapped in a custom data structure.
The data types listed below (and any arbitrary nesting of them) are supported out of the box:
- :class:`torch.Tensor`
- :class:`list`
- :class:`dict`
- :class:`tuple`
- ``torchtext.data.Batch`` (COMING SOON)
For anything else, you need to define how the data is moved to the target device (CPU, GPU, TPU, ...).
Example::
def transfer_batch_to_device(self, batch, device)
if isinstance(batch, CustomBatch):
# move all tensors in your custom data structure to the device
batch.samples = batch.samples.to(device)
batch.targets = batch.targets.to(device)
else:
batch = super().transfer_batch_to_device(data, device)
return batch
Args:
batch: A batch of data that needs to be transferred to a new device.
device: The target device as defined in PyTorch.
Returns:
A reference to the data on the new device.
Note:
This hook should only transfer the data and not modify it, nor should it move the data to
any other device than the one passed in as argument (unless you know what you are doing).
The :class:`~pytorch_lightning.trainer.trainer.Trainer` already takes care of splitting the
batch and determines the target devices.
See Also:
- :func:`~pytorch_lightning.utilities.apply_func.move_data_to_device`
- :func:`~pytorch_lightning.utilities.apply_func.apply_to_collection`
"""
return move_data_to_device(batch, device)