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repairing docker commands in readme

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@ -32,12 +32,12 @@ If you want to use CPU, then remove the `nvidia-` and the `cuda9_` prefixes from
For example, if you have CUDA and all the necessary drivers and GPUs, you you can run a command inside the CUDA Docker image using: For example, if you have CUDA and all the necessary drivers and GPUs, you you can run a command inside the CUDA Docker image using:
```bash ```bash
nvidia-docker run -it --rm -v `pwd`:/decaNLP/ -u $(id -u):$(id -g) bmccann/decanlp:cuda9_torch041 -c "COMMAND --device 0" nvidia-docker run -it --rm -v `pwd`:/decaNLP/ -u $(id -u):$(id -g) bmccann/decanlp:cuda9_torch041 bash -c "COMMAND --device 0"
``` ```
If you want to run the same command without CUDA: If you want to run the same command without CUDA:
```bash ```bash
docker run -it --rm -v `pwd`:/decaNLP/ -u $(id -u):$(id -g) bmccann/decanlp:torch041 -c "COMMAND --device -1" docker run -it --rm -v `pwd`:/decaNLP/ -u $(id -u):$(id -g) bmccann/decanlp:cuda9_torch041 bash -c "COMMAND --device -1"
``` ```
For those in the Docker know, you can look at the Dockerfiles used to build these two images in `dockerfiles/`. For those in the Docker know, you can look at the Dockerfiles used to build these two images in `dockerfiles/`.
@ -55,17 +55,17 @@ nvidia-docker run -it --rm -v `pwd`:/decaNLP/ -u $(id -u):$(id -g) bmccann/decan
To multitask with the fully joint, round-robin training described in the paper, you can add multiple tasks: To multitask with the fully joint, round-robin training described in the paper, you can add multiple tasks:
```bash ```bash
nvidia-docker run -it --rm -v `pwd`:/decaNLP/ -u $(id -u):$(id -g) bmccann/decanlp:cuda9_torch041 -c "python /decaNLP/train.py --train_tasks squad iwslt.en.de --train_iterations 1 --device 0" nvidia-docker run -it --rm -v `pwd`:/decaNLP/ -u $(id -u):$(id -g) bmccann/decanlp:cuda9_torch041 bash -c "python /decaNLP/train.py --train_tasks squad iwslt.en.de --train_iterations 1 --device 0"
``` ```
To train on the entire Natural Language Decathlon: To train on the entire Natural Language Decathlon:
```bash ```bash
nvidia-docker run -it --rm -v `pwd`:/decaNLP/ -u $(id -u):$(id -g) bmccann/decanlp:cuda9_torch041 -c "python /decaNLP/train.py --train_tasks squad iwslt.en.de cnn_dailymail multinli.in.out sst srl zre woz.en wikisql schema --train_iterations 1 --device 0" nvidia-docker run -it --rm -v `pwd`:/decaNLP/ -u $(id -u):$(id -g) bmccann/decanlp:cuda9_torch041 bash -c "python /decaNLP/train.py --train_tasks squad iwslt.en.de cnn_dailymail multinli.in.out sst srl zre woz.en wikisql schema --train_iterations 1 --device 0"
``` ```
To pretrain on `n_jump_start=1` tasks for `jump_start=75000` iterations before switching to round-robin sampling of all tasks in the Natural Language Decathlon: To pretrain on `n_jump_start=1` tasks for `jump_start=75000` iterations before switching to round-robin sampling of all tasks in the Natural Language Decathlon:
```bash ```bash
nvidia-docker run -it --rm -v `pwd`:/decaNLP/ -u $(id -u):$(id -g) bmccann/decanlp:cuda9_torch041 -c "python /decaNLP/train.py --n_jump_start 1 --jump_start 75000 --train_tasks squad iwslt.en.de cnn_dailymail multinli.in.out sst srl zre woz.en wikisql schema --train_iterations 1 --device 0" nvidia-docker run -it --rm -v `pwd`:/decaNLP/ -u $(id -u):$(id -g) bmccann/decanlp:cuda9_torch041 bash -c "python /decaNLP/train.py --n_jump_start 1 --jump_start 75000 --train_tasks squad iwslt.en.de cnn_dailymail multinli.in.out sst srl zre woz.en wikisql schema --train_iterations 1 --device 0"
``` ```
This jump starting (or pretraining) on a subset of tasks can be done for any set of tasks, not only the entirety of decaNLP. This jump starting (or pretraining) on a subset of tasks can be done for any set of tasks, not only the entirety of decaNLP.
@ -76,7 +76,7 @@ If you would like to make use of tensorboard, you can add the `--tensorboard` fl
To read those files and run the Tensorboard server, run (typically in a `tmux` pane or equivalent so that the process is not killed when you shut your laptop) the following command: To read those files and run the Tensorboard server, run (typically in a `tmux` pane or equivalent so that the process is not killed when you shut your laptop) the following command:
```bash ```bash
docker run -it --rm -p 0.0.0.0:6006:6006 -v `pwd`:/decaNLP/ bmccann/decanlp:cuda9_torch041 -c "tensorboard --logdir /decaNLP/results" docker run -it --rm -p 0.0.0.0:6006:6006 -v `pwd`:/decaNLP/ -u $(id -u):$(id -g) bmccann/decanlp:cuda9_torch041 bash -c "tensorboard --logdir /decaNLP/results"
``` ```
If you are running the server on a remote machine, you can run the following on your local machine to forward to http://localhost:6006/: If you are running the server on a remote machine, you can run the following on your local machine to forward to http://localhost:6006/:
@ -106,12 +106,12 @@ If you are having trouble with the specified port on either machine, run `lsof -
You can evaluate a model for a specific task with `EVALUATION_TYPE` as `validation` or `test`: You can evaluate a model for a specific task with `EVALUATION_TYPE` as `validation` or `test`:
```bash ```bash
nvidia-docker run -it --rm -v `pwd`:/decaNLP/ -u $(id -u):$(id -g) bmccann/decanlp:cuda9_torch041 -c "python /decaNLP/predict.py --evaluate EVALUATION_TYPE --path PATH_TO_CHECKPOINT_DIRECTORY --device 0 --tasks squad" nvidia-docker run -it --rm -v `pwd`:/decaNLP/ -u $(id -u):$(id -g) bmccann/decanlp:cuda9_torch041 bash -c "python /decaNLP/predict.py --evaluate EVALUATION_TYPE --path PATH_TO_CHECKPOINT_DIRECTORY --device 0 --tasks squad"
``` ```
or evaluate on the entire decathlon by removing any task specification: or evaluate on the entire decathlon by removing any task specification:
```bash ```bash
nvidia-docker run -it --rm -v `pwd`:/decaNLP/ -u $(id -u):$(id -g) bmccann/decanlp:cuda9_torch041 -c "python /decaNLP/predict.py --evaluate EVALUATION_TYPE --path PATH_TO_CHECKPOINT_DIRECTORY --device 0" nvidia-docker run -it --rm -v `pwd`:/decaNLP/ -u $(id -u):$(id -g) bmccann/decanlp:cuda9_torch041 bash -c "python /decaNLP/predict.py --evaluate EVALUATION_TYPE --path PATH_TO_CHECKPOINT_DIRECTORY --device 0"
``` ```
For test performance, please use the original [SQuAD](https://rajpurkar.github.io/SQuAD-explorer/), [MultiNLI](https://www.nyu.edu/projects/bowman/multinli/), and [WikiSQL](https://github.com/salesforce/WikiSQL) evaluation systems. For WikiSQL, there is a detailed walk-through of how to get test numbers in the section of this document concerning [pretrained models](https://github.com/salesforce/decaNLP#pretrained-models). For test performance, please use the original [SQuAD](https://rajpurkar.github.io/SQuAD-explorer/), [MultiNLI](https://www.nyu.edu/projects/bowman/multinli/), and [WikiSQL](https://github.com/salesforce/WikiSQL) evaluation systems. For WikiSQL, there is a detailed walk-through of how to get test numbers in the section of this document concerning [pretrained models](https://github.com/salesforce/decaNLP#pretrained-models).
@ -123,7 +123,7 @@ This model is the best MQAN trained on decaNLP so far. It was trained first on S
```bash ```bash
wget https://s3.amazonaws.com/research.metamind.io/decaNLP/pretrained/mqan_decanlp_qa_first_cpu.tar.gz wget https://s3.amazonaws.com/research.metamind.io/decaNLP/pretrained/mqan_decanlp_qa_first_cpu.tar.gz
tar -xvzf mqan_decanlp_qa_first_cpu.tar.gz tar -xvzf mqan_decanlp_qa_first_cpu.tar.gz
nvidia-docker run -it --rm -v `pwd`:/decaNLP/ bmccann/decanlp:cuda9_torch041 -c "python /decaNLP/predict.py --evaluate validation --path /decaNLP/mqan_decanlp_qa_first_cpu --checkpoint_name iteration_1140000.pth --device 0" nvidia-docker run -it --rm -v `pwd`:/decaNLP/ -u $(id -u):$(id -g) bmccann/decanlp:cuda9_torch041 bash -c "python /decaNLP/predict.py --evaluate validation --path /decaNLP/mqan_decanlp_qa_first_cpu --checkpoint_name iteration_1140000.pth --device 0"
``` ```
This model is the best MQAN trained on WikiSQL alone, which established [a new state-of-the-art performance by several points on that task](https://github.com/salesforce/WikiSQL): 73.2 / 75.4 / 81.4 (ordered test logical form accuracy, unordered test logical form accuracy, test execution accuracy). This model is the best MQAN trained on WikiSQL alone, which established [a new state-of-the-art performance by several points on that task](https://github.com/salesforce/WikiSQL): 73.2 / 75.4 / 81.4 (ordered test logical form accuracy, unordered test logical form accuracy, test execution accuracy).
@ -132,12 +132,12 @@ This model is the best MQAN trained on WikiSQL alone, which established [a new s
wget https://s3.amazonaws.com/research.metamind.io/decaNLP/pretrained/mqan_wikisql_cpu.tar.gz wget https://s3.amazonaws.com/research.metamind.io/decaNLP/pretrained/mqan_wikisql_cpu.tar.gz
tar -xvzf mqan_wikisql_cpu.tar.gz tar -xvzf mqan_wikisql_cpu.tar.gz
nvidia-docker run -it --rm -v `pwd`:/decaNLP/ bmccann/decanlp:cuda9_torch041 -c "python /decaNLP/predict.py --evaluate validation --path /decaNLP/mqan_wikisql_cpu --checkpoint_name iteration_57000.pth --device 0 --tasks wikisql" nvidia-docker run -it --rm -v `pwd`:/decaNLP/ bmccann/decanlp:cuda9_torch041 -c "python /decaNLP/predict.py --evaluate validation --path /decaNLP/mqan_wikisql_cpu --checkpoint_name iteration_57000.pth --device 0 --tasks wikisql"
nvidia-docker run -it --rm -v `pwd`:/decaNLP/ bmccann/decanlp:cuda9_torch041 -c "python /decaNLP/predict.py --evaluate test --path /decaNLP/mqan_wikisql_cpu --checkpoint_name iteration_57000.pth --device 0 --tasks wikisql" nvidia-docker run -it --rm -v `pwd`:/decaNLP/ -u $(id -u):$(id -g) bmccann/decanlp:cuda9_torch041 bash -c "python /decaNLP/predict.py --evaluate test --path /decaNLP/mqan_wikisql_cpu --checkpoint_name iteration_57000.pth --device 0 --tasks wikisql"
docker run -it --rm -v `pwd`:/decaNLP/ bmccann/decanlp:cuda9_torch041 -c "python /decaNLP/convert_to_logical_forms.py /decaNLP/.data/ /decaNLP/mqan_wikisql_cpu/iteration_57000/validation/wikisql.txt /decaNLP/mqan_wikisql_cpu/iteration_57000/validation/wikisql.ids.txt /decaNLP/mqan_wikisql_cpu/iteration_57000/validation/wikisql_logical_forms.jsonl valid" docker run -it --rm -v `pwd`:/decaNLP/ -u $(id -u):$(id -g) bmccann/decanlp:cuda9_torch041 bash -c "python /decaNLP/convert_to_logical_forms.py /decaNLP/.data/ /decaNLP/mqan_wikisql_cpu/iteration_57000/validation/wikisql.txt /decaNLP/mqan_wikisql_cpu/iteration_57000/validation/wikisql.ids.txt /decaNLP/mqan_wikisql_cpu/iteration_57000/validation/wikisql_logical_forms.jsonl valid"
docker run -it --rm -v `pwd`:/decaNLP/ bmccann/decanlp:cuda9_torch041 -c "python /decaNLP/convert_to_logical_forms.py /decaNLP/.data/ /decaNLP/mqan_wikisql_cpu/iteration_57000/test/wikisql.txt /decaNLP/mqan_wikisql_cpu/iteration_57000/test/wikisql.ids.txt /decaNLP/mqan_wikisql_cpu/iteration_57000/test/wikisql_logical_forms.jsonl test" docker run -it --rm -v `pwd`:/decaNLP/ -u $(id -u):$(id -g) bmccann/decanlp:cuda9_torch041 bash -c "python /decaNLP/convert_to_logical_forms.py /decaNLP/.data/ /decaNLP/mqan_wikisql_cpu/iteration_57000/test/wikisql.txt /decaNLP/mqan_wikisql_cpu/iteration_57000/test/wikisql.ids.txt /decaNLP/mqan_wikisql_cpu/iteration_57000/test/wikisql_logical_forms.jsonl test"
git clone https://github.com/salesforce/WikiSQL.git #git@github.com:salesforce/WikiSQL.git for ssh git clone https://github.com/salesforce/WikiSQL.git #git@github.com:salesforce/WikiSQL.git for ssh
docker run -it --rm -v `pwd`:/decaNLP/ bmccann/decanlp:cuda9_torch041 -c "python /decaNLP/WikiSQL/evaluate.py /decaNLP/.data/wikisql/data/dev.jsonl /decaNLP/.data/wikisql/data/dev.db /decaNLP/mqan_wikisql_cpu/iteration_57000/validation/wikisql_logical_forms.jsonl" # assumes that you have data stored in .data docker run -it --rm -v `pwd`:/decaNLP/ -u $(id -u):$(id -g) bmccann/decanlp:cuda9_torch041 bash -c "python /decaNLP/WikiSQL/evaluate.py /decaNLP/.data/wikisql/data/dev.jsonl /decaNLP/.data/wikisql/data/dev.db /decaNLP/mqan_wikisql_cpu/iteration_57000/validation/wikisql_logical_forms.jsonl" # assumes that you have data stored in .data
docker run -it --rm -v `pwd`:/decaNLP/ bmccann/decanlp:cuda9_torch041 -c "python /decaNLP/WikiSQL/evaluate.py /decaNLP/.data/wikisql/data/test.jsonl /decaNLP/.data/wikisql/data/test.db /decaNLP/mqan_wikisql_cpu/iteration_57000/test/wikisql_logical_forms.jsonl" # assumes that you have data stored in .data docker run -it --rm -v `pwd`:/decaNLP/ -u $(id -u):$(id -g) bmccann/decanlp:cuda9_torch041 bash -c "python /decaNLP/WikiSQL/evaluate.py /decaNLP/.data/wikisql/data/test.jsonl /decaNLP/.data/wikisql/data/test.db /decaNLP/mqan_wikisql_cpu/iteration_57000/test/wikisql_logical_forms.jsonl" # assumes that you have data stored in .data
``` ```
## Inference on a Custom Dataset ## Inference on a Custom Dataset
@ -150,7 +150,7 @@ touch .data/my_custom_dataset/val.jsonl
echo '{"context": "The answer is answer.", "question": "What is the answer?", "answer": "answer"}' >> .data/my_custom_dataset/val.jsonl echo '{"context": "The answer is answer.", "question": "What is the answer?", "answer": "answer"}' >> .data/my_custom_dataset/val.jsonl
# TODO add your own examples line by line to val.jsonl in the form of a JSON dictionary, as demonstrated above. # TODO add your own examples line by line to val.jsonl in the form of a JSON dictionary, as demonstrated above.
# Make sure to delete the first line if you don't want the demonstrated example. # Make sure to delete the first line if you don't want the demonstrated example.
nvidia-docker run -it --rm -v `pwd`:/decaNLP/ bmccann/decanlp:cuda9_torch041 -c "python /decaNLP/predict.py --evaluate valid --path /decaNLP/mqan_decanlp_qa_first_cpu --checkpoint_name iteration_1140000.pth --tasks my_custom_dataset" nvidia-docker run -it --rm -v `pwd`:/decaNLP/ -u $(id -u):$(id -g) bmccann/decanlp:cuda9_torch041 bash -c "python /decaNLP/predict.py --evaluate valid --path /decaNLP/mqan_decanlp_qa_first_cpu --checkpoint_name iteration_1140000.pth --tasks my_custom_dataset"
``` ```
You should get output that ends with something like this: You should get output that ends with something like this:
``` ```