Also fixed flatc not outputting these identifiers for files
compiled on the command-line.
Bug: 16983987
Change-Id: I8b714cfea3a8e144fa52133f62b2f7eda6eb044a
Tested: on Linux
Also removed it appending _wire to filenames, renamed the json golden
file to .golden to not clash with generated files.
Bug: 15781201
Change-Id: I8322861e50d1e5b6a5ab5e4b5e5d8ae13c356eb2
Tested: on Windows and Linux