2024-01-12 08:58:14 +00:00
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#! /usr/bin/env python3
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# usage: demo_submit_batch user_id app_name dir
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# submit a batch of jobs
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# assumptions:
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# - you have an app that takes 1 input file
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# - there's a directory of input files
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#
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# The job names will be of the form
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# appname__batchid__*
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# so that assimilators can know where to put output files
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import os, sys, time, subprocess
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def main(argv):
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if len(argv) != 4:
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print('Usage: demo_submit_batch user_id app_name dir')
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sys.exit(1)
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user_id = int(argv[1])
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app_name = argv[2]
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dir = argv[3]
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# get list of input files
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files = []
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for entry in os.scandir(dir):
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if not entry.is_file():
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raise Exception('not file')
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files.append(entry.name)
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# make the batch record
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cmd = [
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'bin/create_batch',
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'--app_name', app_name,
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'--user_id', str(user_id),
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'--njobs', str(len(files)),
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'--name', '%s__%d'%(app_name, int(time.time()))
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]
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ret = subprocess.run(cmd, capture_output=True)
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if ret.returncode:
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raise Exception('create_batch failed (%d): %s'%(ret.returncode, ret.stdout))
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batch_id = int(ret.stdout)
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# stage the input files
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cmd = ['bin/stage_file', '--copy', dir]
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ret = subprocess.run(cmd, capture_output=True)
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if ret.returncode:
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raise Exception('stage_file failed (%d): %s'%(ret.returncode, ret.stdout))
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# create the jobs
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fstr = '\n'.join(files)
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cmd = [
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'bin/create_work',
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'--appname', app_name,
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'--batch', str(batch_id),
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'--stdin'
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]
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ret = subprocess.run(cmd, input=fstr, capture_output=True, encoding='ascii')
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if ret.returncode:
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raise Exception('create_work failed (%d): %s'%(ret.returncode, ret.stdout))
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# mark the batch as in progress
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2024-01-17 01:12:12 +00:00
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cmd = ['bin/create_batch', '--enable', str(batch_id)]
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2024-01-12 08:58:14 +00:00
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ret = subprocess.run(cmd, capture_output=True)
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if ret.returncode:
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raise Exception('enable batch failed (%d): %s'%(ret.returncode, ret.stdout))
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print('%d jobs submitted. Batch ID %d'%(len(files), batch_id))
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main(sys.argv)
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